BRPI0818507A2 - Modelos computacionais para desenho de gene sintético - Google Patents

Modelos computacionais para desenho de gene sintético

Info

Publication number
BRPI0818507A2
BRPI0818507A2 BRPI0818507-7A BRPI0818507A BRPI0818507A2 BR PI0818507 A2 BRPI0818507 A2 BR PI0818507A2 BR PI0818507 A BRPI0818507 A BR PI0818507A BR PI0818507 A2 BRPI0818507 A2 BR PI0818507A2
Authority
BR
Brazil
Prior art keywords
sequences
methods
sequence
synthetic
interest
Prior art date
Application number
BRPI0818507-7A
Other languages
English (en)
Inventor
Daniel J Tomso
Original Assignee
Athenix Corp
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Athenix Corp filed Critical Athenix Corp
Publication of BRPI0818507A2 publication Critical patent/BRPI0818507A2/pt
Publication of BRPI0818507B1 publication Critical patent/BRPI0818507B1/pt
Publication of BRPI0818507B8 publication Critical patent/BRPI0818507B8/pt

Links

Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding

Landscapes

  • Physics & Mathematics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Medical Informatics (AREA)
  • Biophysics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • General Health & Medical Sciences (AREA)
  • Evolutionary Biology (AREA)
  • Biotechnology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Theoretical Computer Science (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • Chemical & Material Sciences (AREA)
  • Public Health (AREA)
  • Evolutionary Computation (AREA)
  • Epidemiology (AREA)
  • Databases & Information Systems (AREA)
  • Data Mining & Analysis (AREA)
  • Bioethics (AREA)
  • Artificial Intelligence (AREA)
  • Software Systems (AREA)
  • Analytical Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Breeding Of Plants And Reproduction By Means Of Culturing (AREA)
  • Saccharide Compounds (AREA)
  • Agricultural Chemicals And Associated Chemicals (AREA)
  • Enzymes And Modification Thereof (AREA)
  • Micro-Organisms Or Cultivation Processes Thereof (AREA)
BRPI0818507A 2007-10-09 2008-10-09 Método de otimização de uma sequência nucleotídica para expressão em um organismo alvo BRPI0818507B8 (pt)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US97872907P 2007-10-09 2007-10-09
PCT/US2008/079343 WO2009049045A1 (en) 2007-10-09 2008-10-09 Computational methods for synthetic gene design

Publications (3)

Publication Number Publication Date
BRPI0818507A2 true BRPI0818507A2 (pt) 2015-06-16
BRPI0818507B1 BRPI0818507B1 (pt) 2019-09-17
BRPI0818507B8 BRPI0818507B8 (pt) 2022-07-05

Family

ID=40193507

Family Applications (1)

Application Number Title Priority Date Filing Date
BRPI0818507A BRPI0818507B8 (pt) 2007-10-09 2008-10-09 Método de otimização de uma sequência nucleotídica para expressão em um organismo alvo

Country Status (11)

Country Link
US (1) US8175813B2 (pt)
EP (1) EP2208157B1 (pt)
CN (1) CN101821744B (pt)
AT (1) ATE504045T1 (pt)
AU (1) AU2008310806A1 (pt)
BR (1) BRPI0818507B8 (pt)
CA (1) CA2702084C (pt)
DE (1) DE602008005920D1 (pt)
MX (1) MX2010003878A (pt)
WO (1) WO2009049045A1 (pt)
ZA (1) ZA201002472B (pt)

Families Citing this family (31)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2011088463A2 (en) * 2010-01-15 2011-07-21 University Of Delaware Systems and methods for identifying structurally or functionally significant nucleotide sequences
WO2012135436A1 (en) 2011-03-30 2012-10-04 Athenix Corp. Axmi238 toxin gene and methods for its use
US9695440B2 (en) 2011-03-30 2017-07-04 Athenix Corp. AXMI232, AXMI233, and AXMI249 toxin genes and methods for their use
BR112013025665B8 (pt) 2011-04-05 2022-07-05 Athenix Corp Molécula de ácido nucleico recombinante, vetor, microrganismo transgênico, polipeptídeo recombinante e seu método de produção, composição, métodos para controlar ou exterminar uma população de pragas, para proteger uma planta de uma praga, e para aumentar o rendimento em uma planta
WO2014003769A1 (en) 2012-06-29 2014-01-03 Athenix Corp. Axmi277 nematode toxin and methods for its use
AR087367A1 (es) 2011-07-28 2014-03-19 Athenix Corp Gen de la toxina axmi 270 y sus metodos de empleo
EP2737068A1 (en) 2011-07-29 2014-06-04 Athenix Corp. Axmi279 pesticidal gene and methods for its use
UA115235C2 (uk) 2012-03-08 2017-10-10 Атенікс Корп. Ген токсину axmi335 bacillus thuringiensis та спосіб його застосування
UY34663A (es) 2012-03-08 2013-10-31 Athenix Corp Acido nucleico y proteina recombinante del gen de la endotoxina axmi345, vectores, células, composiciones y métodos para proteger plantas
US9758793B2 (en) 2012-08-30 2017-09-12 Athenix Corp. AXMI-234 and AXMI-235 delta-endotoxin genes and methods for their use
CN105264079B (zh) 2013-02-13 2019-10-18 阿则耐克斯公司 Axmi184用于防治根虫昆虫的用途
RU2723717C2 (ru) 2013-03-07 2020-06-17 Атеникс Корп. Гены токсинов и способы их применения
UY35696A (es) 2013-08-09 2015-03-27 Athenix Corp ?molécula de adn recombinante que comprende al gen de toxina axmi440, vector, célula huésped, plantas, composiciones y métodos relacionados?.
US9862967B2 (en) 2013-08-09 2018-01-09 Athenix Corp. AXMI281 toxin gene and methods for its use
CN105764343B (zh) 2013-11-25 2020-04-17 拜耳作物科学有限合伙公司 使用axmi-011控制半翅目昆虫
ES2874901T3 (es) 2013-12-09 2021-11-05 BASF Agricultural Solutions Seed US LLC Gen de la toxina axmi477 y procedimientos para su uso
US11041158B2 (en) 2014-12-22 2021-06-22 AgBiome, Inc. Optimization methods for making a synthetic gene
CA2993760A1 (en) * 2015-07-28 2017-02-02 Yeda Research And Development Co. Ltd. Stable proteins and methods for designing same
US11151497B2 (en) * 2016-04-27 2021-10-19 Zymergen Inc. Microbial strain design system and methods for improved large-scale production of engineered nucleotide sequences
BR112019010476A2 (pt) 2016-11-23 2019-09-10 BASF Agricultural Solutions Seed US LLC molécula de ácido nucleico recombinante, vetor, célula hospedeira, planta transgênica, semente transgênica, polipeptídeo recombinante, composição, método para controlar uma população de pragas, para matar pragas, para produzir um polipeptídeo, planta ou célula vegetal, método para proteger uma planta contra uma praga, para aumentar o rendimento em uma planta, uso e produto primário
KR20190095411A (ko) 2016-12-22 2019-08-14 바스프 아그리컬쳐럴 솔루션즈 시드 유에스 엘엘씨 선충 해충의 방제를 위한 ｃｒｙ１４의 용도
CN110431234B (zh) 2017-01-18 2024-04-16 巴斯夫农业种子解决方案美国有限责任公司 Bp005毒素基因及其使用方法
US11286498B2 (en) 2017-01-18 2022-03-29 BASF Agricultural Solutions Seed US LLC Use of BP005 for the control of plant pathogens
EP4461128A3 (en) 2019-10-14 2025-03-26 BASF Agricultural Solutions US LLC Novel insect resistant genes and methods of use
US12241075B2 (en) 2019-10-14 2025-03-04 Basf Agricultural Solutions Us Llc Insect resistant genes and methods of use
US11049590B1 (en) * 2020-02-12 2021-06-29 Peptilogics, Inc. Artificial intelligence engine architecture for generating candidate drugs
CN113793639B (zh) * 2021-08-03 2024-01-05 杭州瑞丰生物科技有限公司 一种管理玉米螟对Bt毒素抗性的方法
AU2023408197A1 (en) 2022-12-19 2025-06-26 Basf Agricultural Solutions Us Llc Insect toxin genes and methods for their use
AU2024386241A1 (en) 2023-07-07 2026-01-08 Basf Agricultural Solutions Us Llc Use of cry genes for the control of nematode pests
WO2025090606A1 (en) 2023-10-27 2025-05-01 Basf Agricultural Solutions Us Llc Use of novel genes for the control of nematode pests
WO2026010930A1 (en) 2024-07-05 2026-01-08 BASF Agricultural Solutions Seed US LLC Use of axmi277 for the control of rotylenchulus reniformis nematode pests

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US6114138A (en) * 1984-06-04 2000-09-05 Mycogen Plant Science, Inc. Insecticidal protein fragments
US5567600A (en) * 1983-09-26 1996-10-22 Mycogen Plant Sciences, Inc. Synthetic insecticidal crystal protein gene
US5380831A (en) * 1986-04-04 1995-01-10 Mycogen Plant Science, Inc. Synthetic insecticidal crystal protein gene
TR27832A (tr) * 1987-04-29 1995-08-31 Monsanto Co Zararli ucucu hasarata mukavim bitkiler.
NZ230375A (en) * 1988-09-09 1991-07-26 Lubrizol Genetics Inc Synthetic gene encoding b. thuringiensis insecticidal protein
US6015891A (en) * 1988-09-09 2000-01-18 Mycogen Plant Science, Inc. Synthetic insecticidal crystal protein gene having a modified frequency of codon usage
AU638438B2 (en) * 1989-02-24 1993-07-01 Monsanto Technology Llc Synthetic plant genes and method for preparation
US20010003849A1 (en) * 1989-08-07 2001-06-14 Kenneth A. Barton Expression of genes in plants
US6403865B1 (en) * 1990-08-24 2002-06-11 Syngenta Investment Corp. Method of producing transgenic maize using direct transformation of commercially important genotypes
UA48104C2 (uk) * 1991-10-04 2002-08-15 Новартіс Аг Фрагмент днк, який містить послідовність,що кодує інсектицидний протеїн, оптимізовану для кукурудзи,фрагмент днк, який забезпечує направлену бажану для серцевини стебла експресію зв'язаного з нею структурного гена в рослині, фрагмент днк, який забезпечує специфічну для пилку експресію зв`язаного з нею структурного гена в рослині, рекомбінантна молекула днк, спосіб одержання оптимізованої для кукурудзи кодуючої послідовності інсектицидного протеїну, спосіб захисту рослин кукурудзи щонайменше від однієї комахи-шкідника
AT405624B (de) * 1996-09-25 1999-10-25 Stempfer Ferdinand Ing Schweissgerät und schweissverfahren, insbesondere widerstandsschweissverfahren
US8434105B2 (en) * 2007-11-13 2013-04-30 Tp Lab, Inc. Television scripting language

Also Published As

Publication number Publication date
EP2208157A1 (en) 2010-07-21
US20090137409A1 (en) 2009-05-28
CA2702084A1 (en) 2009-04-16
WO2009049045A1 (en) 2009-04-16
MX2010003878A (es) 2010-10-15
EP2208157B1 (en) 2011-03-30
ATE504045T1 (de) 2011-04-15
BRPI0818507B1 (pt) 2019-09-17
ZA201002472B (en) 2011-06-29
AU2008310806A1 (en) 2009-04-16
CN101821744A (zh) 2010-09-01
CN101821744B (zh) 2013-05-22
US8175813B2 (en) 2012-05-08
BRPI0818507B8 (pt) 2022-07-05
CA2702084C (en) 2017-07-25
DE602008005920D1 (en) 2011-05-12

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Legal Events

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B06F Objections, documents and/or translations needed after an examination request according [chapter 6.6 patent gazette]
B06T Formal requirements before examination [chapter 6.20 patent gazette]

Free format text: EXIGENCIA DE PRE-EXAME.

B09A Decision: intention to grant [chapter 9.1 patent gazette]
B16A Patent or certificate of addition of invention granted [chapter 16.1 patent gazette]

Free format text: PRAZO DE VALIDADE: 10 (DEZ) ANOS CONTADOS A PARTIR DE 17/09/2019, OBSERVADAS AS CONDICOES LEGAIS. (CO) 10 (DEZ) ANOS CONTADOS A PARTIR DE 17/09/2019, OBSERVADAS AS CONDICOES LEGAIS

B25A Requested transfer of rights approved

Owner name: BASF SE (DE)

B25A Requested transfer of rights approved

Owner name: BASF AGRICULTURAL SOLUTIONS SEED US LLC (US)