ATE504045T1 - Berechnungsverfahren für das design synthetischer gene - Google Patents

Berechnungsverfahren für das design synthetischer gene

Info

Publication number
ATE504045T1
ATE504045T1 AT08837046T AT08837046T ATE504045T1 AT E504045 T1 ATE504045 T1 AT E504045T1 AT 08837046 T AT08837046 T AT 08837046T AT 08837046 T AT08837046 T AT 08837046T AT E504045 T1 ATE504045 T1 AT E504045T1
Authority
AT
Austria
Prior art keywords
sequences
methods
sequence
synthetic
interest
Prior art date
Application number
AT08837046T
Other languages
English (en)
Inventor
Daniel Tomso
Original Assignee
Athenix Corp
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Athenix Corp filed Critical Athenix Corp
Application granted granted Critical
Publication of ATE504045T1 publication Critical patent/ATE504045T1/de

Links

Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Health & Medical Sciences (AREA)
  • Medical Informatics (AREA)
  • Engineering & Computer Science (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Theoretical Computer Science (AREA)
  • Biophysics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biotechnology (AREA)
  • Evolutionary Biology (AREA)
  • General Health & Medical Sciences (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • Evolutionary Computation (AREA)
  • Analytical Chemistry (AREA)
  • Artificial Intelligence (AREA)
  • Bioethics (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Data Mining & Analysis (AREA)
  • Databases & Information Systems (AREA)
  • Epidemiology (AREA)
  • Chemical & Material Sciences (AREA)
  • Public Health (AREA)
  • Software Systems (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Breeding Of Plants And Reproduction By Means Of Culturing (AREA)
  • Agricultural Chemicals And Associated Chemicals (AREA)
  • Saccharide Compounds (AREA)
  • Enzymes And Modification Thereof (AREA)
  • Micro-Organisms Or Cultivation Processes Thereof (AREA)
AT08837046T 2007-10-09 2008-10-09 Berechnungsverfahren für das design synthetischer gene ATE504045T1 (de)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US97872907P 2007-10-09 2007-10-09
PCT/US2008/079343 WO2009049045A1 (en) 2007-10-09 2008-10-09 Computational methods for synthetic gene design

Publications (1)

Publication Number Publication Date
ATE504045T1 true ATE504045T1 (de) 2011-04-15

Family

ID=40193507

Family Applications (1)

Application Number Title Priority Date Filing Date
AT08837046T ATE504045T1 (de) 2007-10-09 2008-10-09 Berechnungsverfahren für das design synthetischer gene

Country Status (11)

Country Link
US (1) US8175813B2 (de)
EP (1) EP2208157B1 (de)
CN (1) CN101821744B (de)
AT (1) ATE504045T1 (de)
AU (1) AU2008310806A1 (de)
BR (1) BRPI0818507B8 (de)
CA (1) CA2702084C (de)
DE (1) DE602008005920D1 (de)
MX (1) MX2010003878A (de)
WO (1) WO2009049045A1 (de)
ZA (1) ZA201002472B (de)

Families Citing this family (31)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20130060481A1 (en) * 2010-01-15 2013-03-07 Board of Regents of the Nevada System of Higher Ed ucation,on behalf of The Desert Reserach Institut Systems and Methods for Identifying Structurally or Functionally Significant Nucleotide Sequences
WO2012135436A1 (en) 2011-03-30 2012-10-04 Athenix Corp. Axmi238 toxin gene and methods for its use
WO2012135501A2 (en) 2011-03-30 2012-10-04 Athenix Corp. Axmi232, axmi233, and axmi249 toxin genes and methods for their use
EP3971297A1 (de) 2011-04-05 2022-03-23 BASF Agricultural Solutions Seed US LLC Insektizides gen der axmi115-variante und verfahren zu dessen verwendung
WO2014003769A1 (en) 2012-06-29 2014-01-03 Athenix Corp. Axmi277 nematode toxin and methods for its use
MX363910B (es) 2011-07-28 2019-04-08 Athenix Corp Gen de la toxina axmi270 y sus metodos de uso.
US20140223599A1 (en) 2011-07-29 2014-08-07 Athenix Corp. Axmi279 pesticidal gene and methods for its use
BR112014022166B1 (pt) 2012-03-08 2022-08-30 Basf Se Molécula de ácido nucleico codificando um polipeptídeo recombinante delta-endotoxina axmi345, vetor, célula hospedeira, composição, e métodos para matar uma praga, produzir um polipeptídeo e proteger uma planta de uma praga
CN104302662B (zh) 2012-03-08 2018-03-13 阿森尼克斯公司 苏云金芽孢杆菌毒素基因axmi335及其使用方法
US9758793B2 (en) 2012-08-30 2017-09-12 Athenix Corp. AXMI-234 and AXMI-235 delta-endotoxin genes and methods for their use
MX2015010527A (es) 2013-02-13 2016-03-04 Athenix Corp Uso de axmi184 para el control de los insectos del gusano de raiz.
CN105247054B (zh) 2013-03-07 2019-06-18 阿则耐克斯公司 毒素基因及其使用方法
UY35696A (es) 2013-08-09 2015-03-27 Athenix Corp ?molécula de adn recombinante que comprende al gen de toxina axmi440, vector, célula huésped, plantas, composiciones y métodos relacionados?.
US9862967B2 (en) 2013-08-09 2018-01-09 Athenix Corp. AXMI281 toxin gene and methods for its use
WO2015077525A1 (en) 2013-11-25 2015-05-28 Bayer Cropscience Lp Use of axmi-011 for the control of hemipteran insects
CA3236911A1 (en) 2013-12-09 2015-06-18 BASF Agricultural Solutions Seed US LLC Axmi477, axmi482, axmi486 and axmi525 toxin genes and methods for their use
US11041158B2 (en) 2014-12-22 2021-06-22 AgBiome, Inc. Optimization methods for making a synthetic gene
WO2017017673A2 (en) * 2015-07-28 2017-02-02 Yeda Research And Development Co. Ltd. Stable proteins and methods for designing same
US11151497B2 (en) * 2016-04-27 2021-10-19 Zymergen Inc. Microbial strain design system and methods for improved large-scale production of engineered nucleotide sequences
BR112019010476A2 (pt) 2016-11-23 2019-09-10 BASF Agricultural Solutions Seed US LLC molécula de ácido nucleico recombinante, vetor, célula hospedeira, planta transgênica, semente transgênica, polipeptídeo recombinante, composição, método para controlar uma população de pragas, para matar pragas, para produzir um polipeptídeo, planta ou célula vegetal, método para proteger uma planta contra uma praga, para aumentar o rendimento em uma planta, uso e produto primário
US20190364908A1 (en) 2016-12-22 2019-12-05 BASF Agricultural Solutions Seed US LLC Use of cry14 for the control of nematode pests
CN110431234B (zh) 2017-01-18 2024-04-16 巴斯夫农业种子解决方案美国有限责任公司 Bp005毒素基因及其使用方法
AR110756A1 (es) 2017-01-18 2019-05-02 Bayer Cropscience Lp Uso de bp005 para el control de patógenos de planta
BR112022007119A2 (pt) 2019-10-14 2022-07-05 BASF Agricultural Solutions Seed US LLC Molécula de ácido nucleico, ácido nucleico, polipeptídeos, vetor, célula hospedeira, planta transgênica, semente transgênica, composição, métodos para controlar uma população de pragas, para matar uma praga, para produzir um polipeptídeo, para proteger uma planta e para aumentar o rendimento em uma planta, planta, uso do ácido nucleico e produto básico
MX2022004552A (es) 2019-10-14 2022-10-10 BASF Agricultural Solutions Seed US LLC Nuevos genes de resistencia a insectos y métodos de uso.
US11049590B1 (en) * 2020-02-12 2021-06-29 Peptilogics, Inc. Artificial intelligence engine architecture for generating candidate drugs
CN113793639B (zh) * 2021-08-03 2024-01-05 杭州瑞丰生物科技有限公司 一种管理玉米螟对Bt毒素抗性的方法
AU2023408197A1 (en) 2022-12-19 2025-06-26 Basf Agricultural Solutions Us Llc Insect toxin genes and methods for their use
JP2026522972A (ja) 2023-07-07 2026-07-09 ビーエーエスエフ アグリカルチュラル ソリューションズ ユーエス エルエルシー 線虫有害生物を防除するためのｃｒｙ遺伝子の使用
KR20260096857A (ko) 2023-10-27 2026-06-24 바스프 아그리컬쳐럴 솔루션즈 유에스 엘엘씨 선충 해충의 방제를 위한 신규 유전자의 사용
WO2026010930A1 (en) 2024-07-05 2026-01-08 BASF Agricultural Solutions Seed US LLC Use of axmi277 for the control of rotylenchulus reniformis nematode pests

Family Cites Families (12)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5380831A (en) * 1986-04-04 1995-01-10 Mycogen Plant Science, Inc. Synthetic insecticidal crystal protein gene
US5567600A (en) * 1983-09-26 1996-10-22 Mycogen Plant Sciences, Inc. Synthetic insecticidal crystal protein gene
US6114138A (en) * 1984-06-04 2000-09-05 Mycogen Plant Science, Inc. Insecticidal protein fragments
TR27832A (tr) * 1987-04-29 1995-08-31 Monsanto Co Zararli ucucu hasarata mukavim bitkiler.
US6015891A (en) 1988-09-09 2000-01-18 Mycogen Plant Science, Inc. Synthetic insecticidal crystal protein gene having a modified frequency of codon usage
NZ230375A (en) 1988-09-09 1991-07-26 Lubrizol Genetics Inc Synthetic gene encoding b. thuringiensis insecticidal protein
EP1103616A3 (de) * 1989-02-24 2001-06-27 Monsanto Company Synthetische Pflanzengene und Verfahren zu ihrer Herstellung
US20010003849A1 (en) * 1989-08-07 2001-06-14 Kenneth A. Barton Expression of genes in plants
US6403865B1 (en) * 1990-08-24 2002-06-11 Syngenta Investment Corp. Method of producing transgenic maize using direct transformation of commercially important genotypes
UA48104C2 (uk) * 1991-10-04 2002-08-15 Новартіс Аг Фрагмент днк, який містить послідовність,що кодує інсектицидний протеїн, оптимізовану для кукурудзи,фрагмент днк, який забезпечує направлену бажану для серцевини стебла експресію зв'язаного з нею структурного гена в рослині, фрагмент днк, який забезпечує специфічну для пилку експресію зв`язаного з нею структурного гена в рослині, рекомбінантна молекула днк, спосіб одержання оптимізованої для кукурудзи кодуючої послідовності інсектицидного протеїну, спосіб захисту рослин кукурудзи щонайменше від однієї комахи-шкідника
AT405624B (de) * 1996-09-25 1999-10-25 Stempfer Ferdinand Ing Schweissgerät und schweissverfahren, insbesondere widerstandsschweissverfahren
US8434105B2 (en) * 2007-11-13 2013-04-30 Tp Lab, Inc. Television scripting language

Also Published As

Publication number Publication date
AU2008310806A1 (en) 2009-04-16
BRPI0818507B8 (pt) 2022-07-05
DE602008005920D1 (en) 2011-05-12
EP2208157A1 (de) 2010-07-21
US20090137409A1 (en) 2009-05-28
BRPI0818507B1 (pt) 2019-09-17
BRPI0818507A2 (pt) 2015-06-16
US8175813B2 (en) 2012-05-08
CA2702084C (en) 2017-07-25
EP2208157B1 (de) 2011-03-30
ZA201002472B (en) 2011-06-29
MX2010003878A (es) 2010-10-15
CN101821744A (zh) 2010-09-01
WO2009049045A1 (en) 2009-04-16
CN101821744B (zh) 2013-05-22
CA2702084A1 (en) 2009-04-16

Similar Documents

Publication Publication Date Title
BRPI0818507A2 (pt) Modelos computacionais para desenho de gene sintético
Simonin et al. Genome downsizing, physiological novelty, and the global dominance of flowering plants
Mochida et al. Statistical and machine learning approaches to predict gene regulatory networks from transcriptome datasets
Li et al. Microbial community and transcriptional responses to increased temperatures in coral Pocillopora damicornis holobiont
Wang et al. Identification of circular RNAs in kiwifruit and their species-specific response to bacterial canker pathogen invasion
Chrismas et al. Multiple adaptations to polar and alpine environments within cyanobacteria: a phylogenomic and Bayesian approach
Smith et al. Mitochondrial and plastid genome architecture: reoccurring themes, but significant differences at the extremes
Yao et al. The first complete chloroplast genome sequences in Actinidiaceae: genome structure and comparative analysis
Dvořák et al. Synechococcus: 3 billion years of global dominance
Bowman et al. Marchantia: past, present and future
Konotchick et al. Transcriptomic analysis of metabolic function in the giant kelp, M acrocystis pyrifera, across depth and season
Brearley et al. The ecology of the Asian dipterocarps
Liu et al. Comparative analyses of chloroplast genomes provide comprehensive insights into the adaptive evolution of Paphiopedilum (Orchidaceae)
BR112014002027A8 (pt) Gene pesticida axmi279 e métodos para a sua utilização
Rao et al. De novo transcriptome and small RNA analysis of two Chinese willow cultivars reveals stress response genes in Salix matsudana
Kim et al. Comparative plastid genomics of Synurophyceae: inverted repeat dynamics and gene content variation
Ruiz Mondragon et al. Differences in the genomic diversity, structure, and inbreeding patterns in wild and managed populations of Agave potatorum Zucc. used in the production of Tobalá mezcal in Southern Mexico
Liu The impact of climate change on plant epigenomes
Murik et al. Genomic imprints of unparalleled growth
Downie et al. Environment and disease have tissue-specific effects on the tree microbiome
Cole et al. Multi‐season analysis reveals hundreds of drought‐responsive genes in sorghum
Yuan et al. Unveiling microbial dynamics: How forest aging shapes the microbial communities of Pinus massoniana
Zeng et al. Aeronautical mutagenesis and whole-genome resequencing reveal the genetic basis of color change in naematelia aurantialba
Vasileva et al. Ecophysiology of Deuterostichococcus epilithicus (Chlorophyta, Trebouxiophyceae), isolated from surface snow at Rhodope Mountains, Bulgaria
Han et al. De novo sequencing and comparative analysis of Schima superba seedlings to explore the response to drought stress

Legal Events

Date Code Title Description
RER Ceased as to paragraph 5 lit. 3 law introducing patent treaties