BRPI1102019A2 - construction process of mutant attenuated lineage of a pathogenic bacterium, vaccine, vaccine vector and use of said vaccine - Google Patents

construction process of mutant attenuated lineage of a pathogenic bacterium, vaccine, vaccine vector and use of said vaccine Download PDF

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BRPI1102019A2
BRPI1102019A2 BRPI1102019-9A BRPI1102019A BRPI1102019A2 BR PI1102019 A2 BRPI1102019 A2 BR PI1102019A2 BR PI1102019 A BRPI1102019 A BR PI1102019A BR PI1102019 A2 BRPI1102019 A2 BR PI1102019A2
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Marcelo Brocchi
Luciane Benedita Duarte Pivetta
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Abstract

Patente de Invenção para: "PROCESSO DE CONSTRUÇçO DE LINHAGEM ATENUADA MUTANTE DE UMA BACTÉRIA PATOGÊNICA, VACINA, VETOR VACINAL E USO DA REFERIDA VACINA". A presente invenção revela uma nova alternativa para a prevenção de salmonelose, a partir de mutantes capazes de promover imunização do hospedeiro. Em especial tais mutantes são nulos para os genes hupA e/ou HuB de HU e foram testados quanto a atenuação da virulência e capacidade de desencadear resposta imune efetiva e protetora contra a salmonelose, em especial a salmonelose murina, gerando resultados promissores. Adicionalmente, a presente invenção é destinada a um processo de produção desta linhagem atenuada, capaz de promover imunização, a vetores vacinais e vacinas para o tratamento de salmonelose e a seu uso no combate a tal infecção e possivelmente outras doenças, quando se tratanto de vetores multifatoriais.Invention Patent for: "Process of attenuated lineage building process during a pathogenic bacterium, vaccine, vaccine vector and use of said vaccine". The present invention discloses a novel alternative for the prevention of salmonellosis from mutants capable of promoting host immunization. In particular such mutants are null for the HU hupA and / or HuB genes and have been tested for attenuation of virulence and ability to elicit effective and protective immune response against salmonellosis, in particular murine salmonellosis, yielding promising results. Additionally, the present invention is directed to a process of producing this attenuated strain capable of promoting immunization to vaccine vectors and vaccines for the treatment of salmonellosis and their use in combating such infection and possibly other diseases in the case of vectors. multifactorial.

Description

Relatorio Descritivo de Patente de Invengao para: "PROCESSO DE CONSTRUgAO DE LINHA6EM ATENUADA MUTANTE DE UMA BACTERIA PATOGENICA, VACINA, VETOR VACINAL E USO DA REFERIDA VACINA"·Descriptive Report of the Invention Patent for: "PROCESS OF ATTENUALLY ATTENTED LINE BUILDING OF A PATHOGENIC BACTERIA, VACCINE, VACCINE VECTOR AND USE OF SUCH VACCINE" ·

Campo da 工ηνβηςβοField of 工 ηνβηςβο

A presente invengao se refere a um processo de produgao de linhagens mutantes atenuadas, capazes de promover imunizagao, a vetores vacinais e vacinas para ο tratamento de salmonelose e a seu us ο no combate a tal infecgao. Especificamente, tais mutantes sao nulos para os genes hupA e hupB de HU e foram testados quanto a atenuagao da virulencia e capacidade de desencadear resposta imune efetiva e protetora contra a salmonelose. Fundamentos e Antecedentes da Invengao Salmonel 1 aThe present invention relates to a process of producing attenuated mutant strains capable of promoting immunization to vaccine vectors and vaccines for the treatment of salmonellosis and their use in combating such infection. Specifically, such mutants are null for the HU hupA and hupB genes and have been tested for attenuation of virulence and ability to elicit effective and protective immune response against salmonellosis. Fundaments and Background of the Invention Salmonel 1 to

O genero Salmonella sp pertence a famiIia Enterobacteriaceae e e formado por bacilos gram-negativos, anaerobios facultativos e geralmente flagelados (Mastroeni e Maskell, 2006). A classificagao sorologica dessa bacteria fundamenta-se na identificagao de antigenos somaticos (O), flagelares (H) e capsulares (Vi) , este iiltimo quando presente.The genus Salmonella sp belongs to the Enterobacteriaceae family and is formed by gram-negative, facultative and generally flagellated anaerobes (Mastroeni and Maskell, 2006). The serological classification of these bacteria is based on the identification of somatic (O), flagellar (H) and capsular (Vi) antigens, the latter when present.

Estudos de hibridagao de DNA sugerem a existencia deDNA hybridization studies suggest the existence of

duas especies de Salmonella: S· enterica e S· bongori. A especie S· enterica e subdividida em 7 subgrupos, sendo que a grande maioria das sorovariedades patogenicas para ο homem esta incluida no subgrupo 工(Boyd et al. 1996).two species of Salmonella : S · enterica and S · bongori. The S · enteric species is subdivided into 7 subgroups, and the vast majority of pathogenic serovarieties for humans are included in the subgroup 工 (Boyd et al. 1996).

As s orovari edades de S · enterica patogenicas podem causar, em mamiferos, infecgoes com diferentes graus de gravidade, desde gastroenterites localizadas na mucosa intestinal ate infecgoes sistemicas graves, dependendo da sorovariedade bacteriana e do tipo de hospedeiro envOlvido (Baumler et al., 1998). S. en teri ca Typhi e ο agente causador da f ebrePathogenic S · enterica serovarities can cause infections in mammals with varying degrees of severity, from gastroenteritis located in the intestinal mucosa to severe systemic infections, depending on the bacterial serovarity and type of host involved (Baumler et al., 1998). ). S. en teri ca Typhi is the causative agent of fever

tifoide, uma infecgao sistemica grave no homem (Guzman et al.,2006) · S· enterica Choleraesuis causa infecgoes sist^micas graves, principalmente em suinos, embora tambem possa causar infecgoes em humanos (Mastroeni e Maskell, 2006;Salyers e Whitt, 2002). Salmonella enterica Dublin e uma sorovariedade associada principalmente a bovinos· Como S· enterica Thyphi em humanos, a sorovariedade Dublin e invasiva e pode causar gastroenterites e septicemia nesses animais (Mastroeni e Maskell, 2006) . S. enterica Typhimurium e Enteritidis sao causas comuns de gastroenterites em humanos, mas tambem podem estar associadas a infecgoes extra-intestinais (Mastroeni e Maskell, 2006) . Em camundongos, S. enterica Typhimurium eTyphoid, a serious systemic infection in humans (Guzman et al., 2006) · Enteric Choleraesuis causes severe systemic infections, especially in pigs, although it can also cause infections in humans (Mastroeni and Maskell, 2006 ; Salyers and Whitt, 2002). Salmonella enterica Dublin is a serovariety associated mainly with bovines · Like S. enterica Thyphi in humans, Dublin's serovariety is invasive and can cause gastroenteritis and septicemia in these animals (Mastroeni and Maskell, 2006). S. enterica Typhimurium and Enteritidis are common causes of gastroenteritis in humans, but may also be associated with extra-intestinal infections (Mastroeni and Maskell, 2006). In mice, S. enterica Typhimurium and

Enteritidis causam um tipo de infecgao muito semelhante a febre tif0ide humana. Desta forma, camundongos BALB/c sao utilizados como ο modelο murino de infeccao sistemica por S· enter!ca. Salmonelose e doenga A salmonelose e uma das doengas infecciosas maisEnteritidis cause a type of infection very similar to human typhoid. Thus, BALB / c mice are used as a murine model of systemic S · enter! Ca infection. Salmonellosis and disease Salmonellosis is one of the most common infectious diseases.

frequentes tanto em humanos quantο em outros animais. A infecgao por S· enterica inicia-se com a ingestao de agua ou alimentos contaminados, particularmente alimentos derivados de aves e suinos. Estes microrganisnios sao patogenos intracelulares facultativos e, uma vez ingeridos, apresentam a capacidade de aderir e invadir celulas da mucosa intestinal, preferencialmente celulas M (Jones et al. , 1994) · Uma vez ultrapassada a mucosa intestinal, S. enter!ca invade, persiste e prolifera no interior de vaciiolos de celulas do sistema reticulo endotelial podendo assim, alcangar diferentes orgaos e tecidos do hospedeiro, causando infecgao sistemica (Salyer e Whitt, 2002) . Estas infecgoes representam, ainda hoje, um grave problema de sadde piiblica, devido sua alta incidencia e gravidade, principalmente em areas subdesenvolvidas do mundo, onde as condigoes de higiene e saneamento basico sao ainda precarias (Woc-Colburn e Bobak7 2009; Boyle et al. , 2007; Coburn et al. 2007; Figueroa-Ochoa e Verdugo-Rodrigues·frequent both in humans and in other animals. S. enteric infection begins with ingestion of contaminated water or food, particularly poultry and pork foods. These microorganisms are facultative intracellular pathogens and, once ingested, have the ability to adhere to and invade intestinal mucosal cells, preferably M cells (Jones et al., 1994). Once the intestinal mucosa is exceeded, S. enter! it persists and proliferates within endothelial reticulum system cell vaciioles and thus can reach different organs and tissues of the host, causing systemic infection (Salyer and Whitt, 2002). These infections still represent a serious public health problem due to their high incidence and severity, especially in underdeveloped areas of the world, where hygiene and basic sanitation conditions are still precarious (Woc-Colburn and Bobak7 2009 ; Boyle et al ., 2007; Coburn et al. 2007 ; Figueroa-Ochoa and Verdugo-Rodrigues ·

2005; Graham, 2002) No Brasil a salmonelose e um problema serio de εβύάβ pdblica especialmente em regioes mais pobres (Fernandes et al. 2006, Ghilardi et al. , 2006).2005 ; Graham, 2002) In Brazil salmonellosis is a serious problem of public εβύάβ especially in poorer regions (Fernandes et al. 2006, Ghilardi et al., 2006).

A dose infectante mSdia (DI50) de S· enterica capaz de produzir infecgoes clinicas ou subclinicas em humanos esta entre IO5-IO10 organismos ingeridos. O processo infeccioso e localizado no ileo, colon e linfonodos mesentericos apos a ingestao de alimento contaminado, com ο aparecimento de sintomas tais como diarreia, v6mito e dores abdominais (revisado por Darwin e Miller, 1999). A maioria dos casos de gastroenterites ocorre em criangas com menos de 10 anos de idade, e os sintomas tendem a ser mais severos neste grupo, podendo a infecgao tornar-se sistemica.The mean S. enteric infective dose (ID 50) capable of producing clinical or subclinical infections in humans is among 10 5 -10 10 organisms ingested. The infectious process is localized in the ileum, colon and mesenteric lymph nodes following ingestion of contaminated food, with the appearance of symptoms such as diarrhea, vomiting and abdominal pain (reviewed by Darwin and Miller, 1999). Most cases of gastroenteritis occur in children under 10 years of age, and symptoms tend to be more severe in this group and the infection may become systemic.

Uma importante barreira encontrada por S· enterica no processo infeccioso, apos sua passagem pelo epitelio intestinal, sao os macrofagos da submucosa (Mastroeni e Maskell, 2006; Salyers e Whitt, 2002). Os macrofagos detectam e internalizam ο patogeno bacteriano a f im de elimina-lo do hospedeiro. As sorovariedades de S· enter!ca, capazes de causarAn important barrier encountered by S. enterica in the infectious process following its passage through the intestinal epithelium is submucosa macrophages (Mastroeni and Maskell, 2006 ; Salyers and Whitt, 2002). Macrophages detect and internalize the bacterial pathogen in order to eliminate it from the host. The serovarities of S · enter! Ca, capable of causing

irafecgao sistemica, invadem os macrofagos e entao ativam mecanismos de virulencia que permitem a evasao das fung6es microbicidas do fagocito, permitindo a sobrevivencia esystemic invasion, invade macrophages and then activate virulence mechanisms that allow evasion of phagocyte microbicidal fungi, allowing survival and

replicagao no ambiente intracelular (Mastroeni e Maskell, 2006; Salyers e Whitt, 2002; Alpuche-Aranda, et al., 1994). A migragao de macrofagos infectados para outros orgaos do sistema monocitico fagocitario facilita a disseminagao da bacteria no hospedeiro.replication in the intracellular environment (Mastroeni and Maskell, 2006 ; Salyers and Whitt, 2002 ; Alpuche-Aranda, et al., 1994). Migration of infected macrophages to other organs of the phagocytic monocytic system facilitates the spread of bacteria in the host.

Salmonella e VacinasSalmonella and Vaccines

A busca por uma vacina efetiva contra a febre tifoide compoe um importante capitulo na historia da Microbiologia. Varias estratSgias e formulagoes vacinais foram testadas tais como bacterianas, vacinas de subunidades e linhagens vivas atenuadas (revisado por Bueno et al. , 2009; Galen et al. , 2009 ; Guzman et al., 2006) . O antigeno capsular Vi purificado, livre ou conjugado com proteinas carreadoras e imunogenico quando administrado por via intramuscular ou subcutanea e tem se mostrado eficaz em alguns estudos (Guzman et al. , 2006; Strugnell e Wijburg, 2006) . Contudo, devido a suas caracteristicas e mo do de administracao, e incapaz de induzir ο sistema imune ao nivel de mucosa (MALT, do ingles mucosal associated lymphoid tissue). Desta maneira, esforgos foram canalizados no desenvoivimento de vacinas constituidas por linhagens vivas atenuadas, ideais para induzir resposta imune ao nivel do MALT.The search for an effective vaccine against typhoid fever is an important chapter in the history of microbiology. Several strategies and vaccine formulations have been tested such as bacterial, subunit vaccines, and live attenuated strains (reviewed by Bueno et al., 2009 ; Galen et al., 2009 ; Guzman et al., 2006). Purified, free or conjugated carrier protein Vi antigen is immunogenic when administered intramuscularly or subcutaneously and has been shown to be effective in some studies (Guzman et al., 2006 ; Strugnell and Wijburg, 2006). However, due to its characteristics and mode of administration, it is unable to induce mucosal level immune system (MALT). Thus, efforts were channeled in the development of vaccines consisting of live attenuated strains, ideal for inducing MALT immune response.

A primeira vacina viva atenuada desenvolvida contra a febre tifoide e composta pela linhagem S. enterica TyphiThe first live attenuated vaccine developed against typhoid fever and composed of S. enterica Typhi strain

Ty21a. Esta linhagem foi obtida por mutagenese quimica da linhagem parental Ty2 (Germanier e Furer, 1983) . Esta vacina oral e segura, mas devido a sua grande atenuagao, requer varias doses para induzir imunidade, que frequentemente e de curta duragao (Guzman et al., 2006;Ty21a. This strain was obtained by chemical mutagenesis of the Ty2 parent strain (Germanier and Furer, 1983). This oral vaccine is safe, but due to its great attenuation, it requires several doses to induce immunity, which is often short-lived (Guzman et al., 2006;

Strugnell e Wijburg, 2006).Strugnell and Wijburg, 2006).

Os resultados alcangados com a linhagem Ty21a levaram varios grupos a construirem novas linhagens vacinais de S· enter!ca, contendo delegoes em genes alvo especificos que atenuaram a virulencia. Adicionalmente, essas linhagens apresentam uma caracteristica fundamental para vacinas vivas, a estabilidade da atenuagao, uma vez que a mesma foi alcangada por delegao de um ou mais genes (revisado por Guzman et al. , 2006). Esses mutantes foram construidos inicialmente em S. enterica Typhimurium, devido a disponibilidade do modelο murino de infecgao, sendo as mutagoes promissoras transferidas para linhagens de S· enter!ca Typhi, muitas vezes a propria Ty2 (revisado por Guzman et al. , 2006) . Sendo assim, linhagens AaroAf AaroCf AaroD de S· enterica, deficientes na via biossintetica dos aminoacidos aromaticos (Tacket et al., 1997), mutantes Acya Acrpt incapazes de expressar adenilato ciclase e ο receptor para cAMP (Curtiss e Kelly, 1987; Tacket et al. , 1997),Results achieved with the Ty21a strain led several groups to construct new S · enter! Ca vaccine strains, containing delegations in specific target genes that attenuated virulence. Additionally, these strains have a fundamental feature for live vaccines, attenuation stability, since it has been achieved by delegation of one or more genes (reviewed by Guzman et al., 2006). These mutants were initially constructed in S. enterica Typhimurium due to the availability of the murine model of infection, and promising mutations were transferred to S. enterica ca Typhi strains, often Ty2 itself (reviewed by Guzman et al., 2006). . Thus, AaroAf AaroCf AaroD S · enterica strains, deficient in the biosynthetic pathway of aromatic amino acids (Tacket et al., 1997), Acya Acrpt mutants unable to express adenylate cyclase and cAMP receptor (Curtiss and Kelly, 1987 ; Tacket et al., 1997),

mutantes phoP-phoQ (Hohmann et al. , 1996) entre outros· foram construidos e demonstraram-se imunogenicos, apesar da atenuagao da virulencia. No entanto, com frequencia, testes em voluntarios humanos indicaram a ocorrencia de bacteremia e/ou a necessidade de varias doses para a indugao de imunidade (Guzman et al., 2006; Strugnell e Wijburg, 2006). De fato, diversos estudos tem demonstrado ο desafio de se ajustar ο grau de atenuagao da linhagem vacinal para, de um Iado, nao comprometer a resposta imune e de outro, ser livre de efeitos colaterais. A capacidade de invadir, sobreviver e proliferar nophoP-phoQ mutants (Hohmann et al., 1996) among others were constructed and demonstrated immunogenic despite attenuation of virulence. Frequently, however, tests on human volunteers have indicated the occurrence of bacteremia and / or the need for multiple doses to induce immunity (Guzman et al., 2006; Strugnell and Wijburg, 2006). In fact, several studies have shown the challenge of adjusting the degree of attenuation of the vaccine strain so as not to compromise the immune response and free of side effects. The ability to invade, survive and proliferate in the

interior de macrofagos, polimorfonucleares e celulas dendriticas, aliada a disponibilidade de mutantes atenuados fazem de S. enterica um excelente carreador de antigenos a celulas do sistema imune. Assim7 linhagens atenuadas de S. enterica podem ser manipuladas gene ticamente de tal forma a expressar antigenos heterologos, construindo-se linhagens vacinais multifatoriais. Diferentes antigenos derivados de outras bacterias, virus, fungos, parasitas e mesmo de celulas de mamifero foram expressos em linhagens vacinais de S. enterica. Estas linhagens foram capazes de induzir resposta imune protetora nao somente contra a salmonelose, mas tambem contra ο organismo doador do antigeno heterologo (Cheminay e Hensel, 2007; Kwon et al., 2007; Loessner etmacrophages, polymorphonuclear cells and dendritic cells, together with the availability of attenuated mutants make S. enterica an excellent carrier of antigens to cells of the immune system. Thus attenuated S. enterica strains can be genetically engineered to express heterologous antigens by constructing multifactorial vaccine strains. Different antigens derived from other bacteria, viruses, fungi, parasites and even mammalian cells were expressed in S. enterica vaccine strains. These strains were able to induce protective immune response not only against salmonellosis but also against the heterologous donor organism (Cheminay and Hensel, 2007 ; Kwon et al., 2007 ; Loessner et

al., 2007; Mahoney et al., 2007; Atkins et al., 2006). Uma caracteristica fundamental de tais linhagens e, alem de ser muito improvavel a reversao da atenuagao, a capacidade de expressar ο antigeno heterologo de forma estavel e em quantidades suficientes para induzir ο sistema imune.al., 2007 (Mahoney et al., 2007 - Atkins et al., 2006). A fundamental feature of such strains is, in addition to the reversal of attenuation being very unlikely, the ability to express the heterologous antigen stably and in sufficient amounts to induce the immune system.

No inicio, a clonagem e expressao de antigenos em S·At first, cloning and expression of antigens on S ·

enterica eram alcangadas atraves da utilizagao de plasmideos carregando genes de resistencia a antibioticos (Cardenas e Clements, 1992) . Alguns estudos demonstraram, no entanto, que na ausencia de pressoes seletivas, tais plasmideos eram instaveis e, portanto, perdidos apos poucos ciclos de replicagao in vivo (Cardenas e Clements, 1992 ; Dunstan et al. , 2003) ou ate mesmo durante ο cultivo in vi tro (Everest et al., 1995).Enteric infections were achieved by the use of plasmids carrying antibiotic resistance genes (Cardenas and Clements, 1992). However, some studies have shown that in the absence of selective pressures, such plasmids were unstable and therefore lost after few replication cycles in vivo (Cardenas and Clements, 1992 ; Dunstan et al., 2003) or even during cultivation. in vitro (Everest et al., 1995).

Para resolver tais problemas, estrategias como a utilizagao de promotores induzidos in vivo no controle de expressao do antigeno (Cheminay e Hensel, 2007; Marshall et al. , 2000), construgao de sistemas letais balanceados (Curtiss et al., 1990; Everest et al·, 1995) ou a integragao do gene heterologo no cromossomo de S· enter!ca (Hone et al., 1988; Strugnell et al., 1990; Everest et al., 1995) foram descritos·To address such problems, strategies such as using in vivo induced promoters to control antigen expression (Cheminay and Hensel, 2007 ; Marshall et al., 2000), building balanced lethal systems (Curtiss et al., 1990 ; Everest et al ·, 1995) or the integration of the heterologous gene on the S · enter! ca chromosome (Hone et al., 1988; Strugnell et al., 1990 ; Everest et al., 1995) have been described ·

O nucleoide bacteriano e os genes-alvo: hupA e hupBBacterial nucleoside and target genes: hupA and hupB

Bacterias contem proteinas que compoem ο nucleoideBacteria contain proteins that make up the nucleoid

bacteriano (、xnucleoid-associates proteins", Nap) juntamente com ο DNA cromoss6mico. Diferente das histonas de eucariotos, as proteinas bacterianas parecem nao formar com ο DNA complexos analogos aos nucleossomas (Thanbichler et al. , 2005) · Dentro deste grupo encontram-se 12 proteinas sendo que as mais estudadas sao HU, FIS, IHF, HNS e DPS (Dorman, 2009; Dorman e Kane, 2009; Croinin e Dorman et al, 2007; Dorman et al., 2006; Drlica e Rouviere-Yaniv, 1987).(n xnucleoid-associates proteins ", Nap) together with chromosomal DNA. Unlike eukaryotic histones, bacterial proteins do not appear to form nucleosome-like complexes with DNA (Thanbichler et al., 2005) · Within this group are there are 12 proteins and the most studied are HU, FIS, IHF, HNS and DPS (Dorman, 2009 ; Dorman and Kane, 2009 ; Croinin and Dorman et al, 2007 ; Dorman et al., 2006; Drlica and Rouviere-Yaniv, 1987).

HU e uma proteina heterodimSrica codificada por dois genes, sendo eles hupA e hupB. Esta proteina parece nao reconhecer nenhuma sequencia especifica para a ligagao ao DNA, mas apresenta grande afinidade a regioes supercoiled ou que apresentem distorgoes na estrutura do DNA (Pinson et al · , 1999) · Swinger et al. (2004) demonstraram que essa proteina e capaz de induzir e estabilizar curvaturas de diferentes angulos no DNA. Alguns estudos sugerem que HU participe do reparo do DNA por recombinacao (Swinger et al. , 2004).HU is a heterodimeric protein encoded by two genes, namely hupA and hupB. This protein does not appear to recognize any specific DNA binding sequence, but has great affinity for regions supercoiled or distorted in DNA structure (Pinson et al., 1999). Swinger et al. (2004) demonstrated that this protein is capable of inducing and stabilizing curvatures of different angles in DNA. Some studies suggest that HU participates in DNA repair by recombination (Swinger et al., 2004).

Ha poucos dados na literature sobre a proteina HU e Salmonella especificamente (Mangan et al. , 2011), embora haja mais relatos entre essa proteina e Escherichia coli. Ainda assim, os estudos descritos focaram-se no func i onamentο da proteina demons trando a regulagao de fatores de patogenicidade, mas nao investigaram a possivelThere is little data in the literature on the HU and Salmonella protein specifically (Mangan et al., 2011), although there are more reports between this protein and Escherichia coli. Nevertheless, the studies described focused on protein function demonstrating the regulation of pathogenicity factors, but did not investigate the possible

atenuagao promovida pela delegao dos genes hupA ou hupB e a indugao de protegao no modelο murino.attenuation promoted by the deletion of the hupA or hupB genes and the induction of protection in the murine model.

O gene hup A de Salmonella foi comparado ao gene hup A de E.coli por clonagem e sequenciamento, ο que revelou que as subunidades HUa dessas bacterias sao identicas e que as sequencias fora das ORFs sao altamente conservadas (Higgins Sc Hillyard, 1988).The Salmonella hup A gene was compared to the E.coli hup A gene by cloning and sequencing, which revealed that the HUa subunits of these bacteria are identical and that the sequences outside the ORFs are highly conserved (Higgins Sc Hillyard, 1988).

Esses estudos revelam que a proteina HU afeta processos celulares como compactagao do DNA, replicagao, recombinagao, regulagao genica, alem de participar no crescimento termo sensivel, adaptagao na fase estacionaria de crescimento, lisogenia e transposigao do bacteri0fago Mu e e capaz de se ligar inespecif icamente ao DNA (Bi et al., 2009). Em S. enter!ca HU coordena a expressao de genes envolvidos no metabolismo central e virulencia (Mangan et al., 2011).These studies reveal that HU protein affects cellular processes such as DNA compacting, replication, recombination, gene regulation, as well as participating in thermosensitive growth, stationary growth phase adaptation, lysogenesis and transposition of the bacteriophage Mu e that is capable of non-specific binding. to DNA (Bi et al., 2009). In S. enter! Ca HU coordinates the expression of genes involved in central metabolism and virulence (Mangan et al., 2011).

0 gene hupB ja foi descrito como sendo um modulador negativo na expressao de hilA, que e um gene crucial na expressao do fenotipo invasivo de Salmonella (Fahlen et al. , 2000) . No entanto, ha controversias sobre a agao de hupB, pois estudos posteriores realizados por outro grupo de pesquisa apontaram que esse gene tern uma agao positive na regulagao de hilA (Schechter et al., 2003).The hupB gene has already been described as a negative modulator in hilA expression, which is a crucial gene in the expression of invasive Salmonella phenotype (Fahlen et al., 2000). However, there are controversies about the hupB action, as further studies by another research group have shown that this gene has a positive action on hilA regulation (Schechter et al., 2003).

Berger et al. (2009) construiram um duplo mutante AhupAAhupB de E.coli para verificar as alteragSes na estrutura gendmica promovida pela ausencia da proteina HU. Por esse estudo, foi possivel observer que a ausencia de HU provoca um rearranjo espacial no padrao de transcrigao, causando uma perturbagao da homeostase topologica que e compensada por uma maior acessibilidade de sitios de DNA pela topoisomerase. O sisterna de recombinagao λ RedBerger et al. (2009) constructed a double E.coli AhupAAhupB mutant to verify changes in the gene structure promoted by the absence of the HU protein. From this study, it was possible to observe that the absence of HU causes a spatial rearrangement in the transcription pattern, causing a disturbance of topological homeostasis that is offset by greater accessibility of DNA sites by topoisomerase. The recombinant system λ Red

Em bacterias entericas, a obtengao de recombinantes utilizando moleculas 1ineares de DNA e um evento altamente raro, devido a instabilidade da molecula de DNA linear, que uma vez no interior da celula e rapidamente degradada pela atividade de nucleases do sistema de recombinagao RecBCD. Para contornar esta dificuldade, um sistema baseado no uso da maguinaria de recombinagao do bacteriofago λ (ο sistema XRed) foi proposto.In enteric bacteria, recombinant procurement using 1inear DNA molecules is a highly rare event, due to the instability of the linear DNA molecule, which once inside the cell is rapidly degraded by nuclease activity of the RecBCD recombination system. To circumvent this difficulty, a system based on the use of bacteriophage λ recombination machinery (ο XRed system) has been proposed.

Datsenko e Wanner (2000) descreveram a construgao e ο emprego de um sistema baseado no bacteriofago λ para a construgao de linhagens mutantes de bacterias entericas. Este sistema e composto por plasmideos acessorios, sendo ο plasmideo pkD3 utilizado na construgao de cassetes de recombinagao por PCR (Datsenko e Wanner. 2000).Datsenko and Wanner (2000) described the construction and use of a bacteriophage-based system for the construction of mutant enteric bacterial strains. This system is made up of accessory plasmids, the plasmid pkD3 being used in the construction of PCR recombinant cassettes (Datsenko and Wanner. 2000).

Durante a busca de anterioridade, ο documentο US 2004/101531 reivindica a delegao dos genes cya e crp de Salmonella. Embora a estrategia da presente inveneao tenha sido similar, a delegao ocorreu em outros genes, hup A e hupBf ο que corxferiu atenuagao da bacteria e consequente aplicagao da mesma como vetor vacinal· Portanto, nota-se que uma estrategia de imunizagao baseada no si1enciamentο genico de HU nao f oi descrita nem sequer sugerida pelo referido documento.During the prior search, document US 2004/101531 claims the deletion of the Salmonella cya and crp genes. Although the strategy of the present invention was similar, delegation occurred in other genes, hup A and hupBf ο which corresponded to bacterial attenuation and consequent application of it as a vaccine vector. Therefore, it is noted that an immunization strategy based on genetic isolation HU was not described or even suggested by that document.

0 pedido de patente brasileiro PI 0006291-0, deposit ado em 27 de dezembro de 2000 em nome de Intervet International B. V. e intitulado: nBacteria do Genero Salmonella, Vacina para a Protegao de Animais contra a Salmonelose, Uso de uma Bacteria, e, Processo para a Preparagao de uma Vacina", se refere a bacterias de Salmonella para usο como uma vacina. A invengao tambem diz respeito a vacinas com base nas ditas bacterias, que sao dteis para a prevengao da patogenese microbiana. Alem disso, ο referido documento diz respeito ao uso de tais bacterias ou a fabricagao de tais vacinas. 2 O Como pode ser observado, ο referido documento PIBrazilian patent application PI 0006291-0, filed December 27, 2000, on behalf of Intervet International BV, entitled : Salmonella Genus, Vaccine for the Protection of Animals against Salmonellosis, Use of a Bacteria, and, Process for Preparing a Vaccine "refers to Salmonella bacteria for use as a vaccine. The invention also relates to vaccines based on said bacteria, which are useful for preventing microbial pathogenesis. In addition, said document says regarding the use of such bacteria or the manufacture of such vaccines.2 As can be seen, said PI document

0006291-0 diz respeito somente a atenuagao promovida pela delegao de outro gene, isto e, ο gene recA.0006291-0 concerns only the attenuation promoted by the delegation of another gene, that is, the recA gene.

A patente americana US 7,045,122, depositada em 15 deU.S. Patent 7,045,122, filed December 15,

novembro de 2001, em nome de AKZO NOBEL N.V e intitulada: 、、Salmonella Vaccine" refere-se a cepas vivas atenuadas de Salmonella c omp r e endendo uma primeira mutagao atenuante, que nao sao capazes de produzir RecA funcional. A invengao tambem relata que estas bacterias sao para uso em vacinas.November 2001, in the name of AKZO NOBEL NV and entitled : "Salmonella Vaccine" refers to live attenuated strains of Salmonella and represents a first attenuating mutation, which are not capable of producing functional RecA. The invention also reports that These bacteria are for use in vaccines.

Como pode ser observado, ο referido documento USAs can be seen, ο said US document

7,045,122 tambem diz respeito somente a atenuagao promovida pela delegao de um gene, isto e, ο gene recA·7,045,122 also concerns only the attenuation promoted by the delegation of a gene, that is, the recA gene ·

〇 pedido de patente internacional WO/2010/096888, depositado em 25 de fevereiro de 2010, em nome de Universidade Estadual de Campinas 一 UNICAMP e intitulado: “Vacinas Compreendendo Linhagens Atenuadas f Processo de Construgao de Linhagens Atenuadas, Vetores Vacinais e seu Uso no Tratamento da Salmonelose" revela uma nova alternativa para a prevengao de salmonelose, a partir de mutantes capazes de promover imunizagao do hospedeiro. Em especial tais mutantes sao nulos para os genes himA e himD de 工HF e foram testados quanto a atenuagao da virulencia e capacidade de desencadear resposta imune efetiva e protetora contra a salmonelose, em especial a salmonelose murina.Internacional International Patent Application WO / 2010/096888, filed on February 25, 2010, on behalf of the State University of Campinas 一 UNICAMP and entitled : “Vaccines Comprising Attenuated Bloodlines f Process of Building Attenuated Bloodlines, Vaccine Vectors and their Use in the Salmonellosis Treatment "reveals a new alternative for the prevention of salmonellosis from mutants capable of promoting host immunization. In particular such mutants are null for the ΔHF himA and himD genes and have been tested for attenuation of virulence and capacity. trigger an effective and protective immune response against salmonellosis, in particular murine salmonellosis.

Como pode ser observado, no referido documento WO/2010/096888 a atenuagao e promovida pela delegao dos genes ihfA ou ihfB.As can be seen in said WO / 2010/096888 attenuation is promoted by the deletion of the ihfA or ihfB genes.

O documento de patente americano US 2004/101531 descreve vacinas e composig5es imunogenicas que utilizam bacterias patogenicas vivas atenuadas, tal como Salmonella, para distribuir antigenos ectopicos para ο sistema imune da mucosa dos animais vertebrados. As bacterias patogenicas atenuadas sao preparadas para secretar ο antigeno para ο espago periplasmico das bacterias ou para dentro das bacterias·US 2004/101531 describes vaccines and immunogenic compositions that use live attenuated pathogenic bacteria, such as Salmonella, to deliver ectopic antigens to the mucosal immune system of vertebrate animals. Attenuated pathogenic bacteria are prepared to secrete antigen for bacterial periplasmic space or into bacteria.

Como pode ser observado, no referido documento US 2004/101531 e descrito a delegao dos genes cya e crp de Salmonella.As can be seen, in said US 2004/101531 the delegation of Salmonella cya and crp genes is described.

O emprego de linhagens bacterianas vivas atenuadas como vacina esta historicamente associado a indugao de resposta imunolcSgica· efetiva e persistente. O vetor vacinal e constituido por uma bacteria que expressa antigenos (proteinas) de outras espScies de microorgariismos obtidos atraves do metodo de DNA recombinante. Quando apresentados ao sistema imune do hospedeiro (organismo alvo) estes microorganismos estimulam a produgao de anticorpos contra a doenga de interesse, sem que ela cause sintomas ou danos graves ao hospedeiro.The use of live attenuated bacterial strains as a vaccine has historically been associated with effective and persistent immune response induction. The vaccine vector is comprised of a bacterium that expresses antigens (proteins) from other species of microorganisms obtained by the recombinant DNA method. When presented to the host (target organism) immune system these microorganisms stimulate the production of antibodies against the disease of interest without causing serious symptoms or damage to the host.

Embora estudos venham demonstrando estrategias de imunizagao baseada no silenciamento genico, em nenhum dos casos foi revelado e η em sequer sugerido um processo queAlthough studies have shown immunization strategies based on gene silencing, in none of the cases has it been revealed and even a process has not been suggested.

permita uma estrategia de imunizagao baseada no silenciamento genico de HU.allow for an immunization strategy based on genetic silencing of HU.

E sabido que mutagoes atenuadoras diferentes conferem propr i edades biolcSgicas, como imunogeni c i dade, dif erentes . Sumario da Invengao Para solucionar os problemas acima mencionados, aIt is well known that different attenuating mutations confer different biological properties such as immunogenicity. Invention Summary To solve the above mentioned problems, the

presente invengao propiciara vantagens significativas em relagao aos processos de imunizagao baseada no silenciamento genico de HU, possibilitando um aumento do seu desempenho e apresentando uma relagao custo/beneficio mais favoravel.The present invention will provide significant advantages over immunization processes based on genetic silencing of HU, enabling an increase in its performance and presenting a more favorable cost / benefit ratio.

A presente invengao se refere em um primeiro aspecto, a construgao de mutantes nulos de S. enter!ca para os genes (hupA e/ou hupB) codificadores de HU (Heat Unstable Protein) com ο intuito de desenvolver linhagens atenuadas quanto a virulencia, mas capazes de causar infecgao transitoria e induzir ο sistema imune de forma efetiva, constituindo-se em potenciais linhagens vacinais.The present invention relates in a first aspect to the construction of S. enter! Ca null mutants for the HU (Heat Unstable Protein) encoding genes (hupA and / or hupB) in order to develop attenuated virulence lines, but capable of causing transient infection and effectively inducing the immune system, constituting potential vaccine strains.

E um objeto da presente invengao uma bacteria atenuada compreendendo pelo menos um gene codificador de HU silenciado em uma bacteria patogenica.And an object of the present invention is an attenuated bacteria comprising at least one mutated HU encoding gene in a pathogenic bacteria.

A presente invengao refere-se tambem a uma vacina baseada em bacterias atenuadas compreendendo pelo menos um gene codificador de HU silenciado em uma bacteriaThe present invention also relates to an attenuated bacterial-based vaccine comprising at least one mutated HU gene encoding a bacterium.

patogenica, capaz de induzir e estimular uma resposta imune no hospedeiro vertebrado. Breve Descrigao dos Anexospathogenic, capable of inducing and stimulating an immune response in the vertebrate host. Brief Description of Attachments

A estrutura e operagao da presente invengao, juntamente com vantagens adicionais da mesma podem ser mais bem entendidas mediante referencia aos desenhos em anexo e a seguinte descricao:The structure and operation of the present invention, along with additional advantages thereof may be better understood by reference to the accompanying drawings and the following description:

O Anexo Ieum gel de agarose 1% mostrando ο cassete de recombinagao gerado por PCR utilizando os primers hupA-f e hupA-r;Appendix I is a 1% agarose gel showing the PCR generated recombinant cassette using the hupA-f and hupA-r primers.

O Anexo 2a e 2b e um gel de agarose 1 % mostrando οAnnex 2a and 2b and a 1% agarose gel showing ο

produto de amplificagao por PCR do gene cat presente em ST662AhupA :C3. t θ ST662AhupB : Cd. t, coin os iniciadores hupADTIf e hupADTIr e hupBDTf e hupBDTr, respectivamente;PCR amplification product of the cat gene present in ST662AhupA: C3. t θ ST662AhupB : Cd. t, with primers hupADTIf and hupADTIr and hupBDTf and hupBDTr, respectively ;

O Anexo 3 e um gel de agarose 1% demons trando a excisao do gene cat das linhagens ST662AhupA: cat e ST662AhupB:cat para a construgao do duplo mutante ST662Ah upAAh upB ;Annex 3 is a 1% agarose gel showing the cat gene excision of ST662AhupA : cat and ST662AhupB : cat for the construction of the double ST662Ah upAAh upB mutant ;

O Anexo 4 e um gel de agarose 1% demons trando os produtos de amplificagao por PCR das regioes referentes aos genes hupA e hupB, respectivamente;Annex 4 is a 1% agarose gel showing the PCR amplification products of the hupA and hupB gene regions, respectively ;

O Anexo 5 e um esquema demonstrando a delegao dos genes hupA e hupB e a posigao dos iniciadores de detecgao,Annex 5 is a scheme demonstrating the delegation of the hupA and hupB genes and the position of the detection primers,

representados como setas. Descrigao Detalhada da Invengaorepresented as arrows. Detailed Description of the Invention

Exnbora a presente invengao possa ser suscetivel a diferentes modalidades, e mostrada nos desenhos e na seguinte discussao detalhada, uma modalidade preferida com ο entendimento de que a presente modal idade deve ser considerada uma exemplificagao dos principios da invencao e nao pretende limitar a presente invengao ao que foi ilustrado e descrito agui.Although the present invention may be susceptible to different embodiments, and shown in the drawings and the following detailed discussion, a preferred embodiment is the understanding that the present embodiment should be considered an exemplification of the principles of the invention and is not intended to limit the present invention to the present invention. which has been illustrated and described here.

O Anexo Ieum Gel de agarose 1% com ο fragmento gerado por PCR, correspondente ao cassete de recoinbinagao do gene hup A para a construgao da linhagem mutante. Da esquerda para a direita, as amostras referem-se ao Marcador de Peso Molecular 1 kb DNA ladder (Fermentas); controle negativo e ο cassete de recombinagao do gene hupA, com cerca de 1200 pb, compreendendo ο gene cat e regioes flanqueadoras compostas por sitios FRT (FLP Recognition Targets) e regioes adjacentes aos gene-alvo.Annex 1 is a 1% PCR-generated fragment of agarose gel corresponding to the hup A gene recombination cassette for the construction of the mutant strain. From left to right, the samples refer to the 1 kb DNA ladder Molecular Weight Marker (Fermentas) negativo negative control and about 1200 bp hupA gene recombinant cassette comprising ο cat gene and flanking regions composed of FRT (FLP Recognition Targets) sites and regions adjacent to the target genes.

Os Anexos 2a e 2b e uma construgao dos mutantes AhupA e AhupB de S. enterica. Gel de agarose 1% com os produtos de PCR utilizando-se respectivamente os primers hupADT e hupBDT (primers de detecgao) para confirmagao da mutagenese. O controle positivo corresponde a linhagemAnnexes 2a and 2b are a construct of the S. enterica mutants AhupA and AhupB. 1% agarose gel with PCR products using respectively hupADT and hupBDT primers (detection primers) to confirm mutagenesis. Positive control corresponds to lineage

selvagem 662ST, com amplificagao do gene integro e regioes f lanqueadoras, gerando fragmento de 396 pb para hup A e 371 pb para hupB, enquanto os mutantes apresentam banda de aproximadamente 1.2 kb, equivalente ao gene cat e regioes f lanqueadoras. MPM: Marcador de Peso Molecular 1 kb DNA ladder (Fermentas) ; CN: Controle Negative* (sem DNA) ; CP: Controle Positivo (DNA genomico da linhagem selvagem).662ST, with amplification of the entire gene and flanking regions, generating fragment of 396 bp for hup A and 371 bp for hupB, while the mutants have a band of approximately 1.2 kb, equivalent to the cat gene and flanking regions. MPM : Molecular Weight Marker 1 kb DNA ladder (Fermentation) ; CN : Negative Control * (no DNA) ; CP: Positive Control (genomic DNA from wild line).

O Anexo 3 mostra a eliminaeao do cassete de resistencia ao cloranfenicol em mutantes AhupA e AhupB de S. entericaf demonstrando as "cicatrizes" de cerca de 100 pb, correspondentes tambem aos sitios FRT. Foram utilizados os primers hupADTl para as linhagens mutantes AhupA e hupBDT para os mutantes AhupB · MPM — Marcador de peso molecular 1 kb DNA ladder (Fermentas) ; CN — Controle negativo; CmR - linhagens portadoras do gene cat. O Anexo 4 e um gel de agarose 1 % demons trando osAnnex 3 shows the elimination of the chloramphenicol resistance cassette in S. entericaf mutants AhupA and AhupB demonstrating the "scars" of about 100 bp corresponding also to the FRT sites. The hupADTl primers were used for the AhupA and hupBDT mutant strains for the AhupB · MPM mutants. 1 kb DNA ladder molecular marker (Fermentas) ; CN - Negative Control ; CmR - cat. Appendix 4 is a 1% agarose gel showing the

produtos de PCR para regioes flanqueadoras ao gene hupA e hupB, respectivamente. Da esquerda para a direita: Marcador de peso molecular 1 kb DNA ladder (Fermentas); Controle negativo; Controle positivo para hupA, composto por DNA genomico da linhagem selvagem 662ST, com fragmento referente ao gene integro hupA (importante salientar que neste caso os iniciadores hupADT2 foram utilizados, gerandoPCR products for hupA and hupB flanking regions, respectively. From left to right : Molecular weight marker 1 kb DNA ladder (Fermentation) negativo Negative control positivo Positive control for hupA, composed of 662ST wild-type genomic DNA, with fragment referring to the integral hupA gene (important to note that in this case the primers hupADT2 were used, generating

fragmento de 702 pb para hupA); Linhagem 662STAhupA, com fragmento amplificado pelos primers hupADT2, referente ao gene cat e regi5es flanqueadoras; Linhagem duplo mutante 6 6 2 S TAh upAAhupB, amplificado pelos primers hupADT2; Controle positivo, composto pelo DNA genomicο da linhagem selvagem 662ST, com fragmento referente ao gene integro hupB; Linhagem 662STAhupBf com fragmento amplificado pelos primers hupBOT, referente ao gene cat e regioes flanqueadoras; Linhagem duplo mutante 6 6 2 SΤΔΛupAAhupB, amplificado pelos primers hupBOT. O Anexo 5 e um esquema demonstrative) das etapas de702 bp fragment for hupA) ; 662STAhupA strain, with fragment amplified by hupADT2 primers for cat gene and flanking regions duplo Double mutant strain 6 6 2 S TAh upAAhupB, amplified by hupADT2 primers ; Positive control, composed of genomic DNA from strain wild 662ST, with fragment referring to the hupB integer gene ; 662STAhupBf strain with fragment amplified by hupBOT primers, referring to the cat gene and flanking regions ; Double mutant strain 6 6 2 SΤΔΛupAAhupB, amplified by hupBOT primers. Annex 5 is a demonstrative outline) of the steps of

construgao das linhagens mutantes AhupA e AhupB e posigao dos primers de detecgao hupADT e hupBOT t representados como setas. Inicialmente ο gene-alvo esta integro, demonstrado em branco. Posteriormente, ο gene-alvo e substituido pelo gene cat (cloranphenicol acetyl transferase), tambem demons tracio em branco. Na Ultima etapa, ο gene de resistencia ao antibiotico cloranfenicol e eliminado, restando apenas uma ”cicatriz" composta por sitios FRT (regiao hachurada)· Modalidade Preferencia1 da Invengao Bacteria Patogenicaconstruction of the AhupA and AhupB mutant strains and position of the hupADT and hupBOT detection primers are shown as arrows. Initially the target gene is whole, shown in white. Subsequently, the target gene is replaced by the cat gene (chloramphenicol acetyl transferase), also shown in blank traces. In the last stage, the chloramphenicol antibiotic resistance gene is deleted, leaving only one "scar" composed of FRT (hatched region) sites.

As bacterias patogenicas de acordo com a presenteThe pathogenic bacteria according to the present

invengao sao bacterias capazes de provocar doengas e/ou morte em seus hospedeiros. Exemplos de bacterias patogenicas incluem, sem limitagoes, bacterias gram negatives, em especial membros das familias Enterobacteriaceae f Vibrionaceae, Franci sellaceae,Invention are bacteria capable of causing disease and / or death in their hosts. Examples of pathogenic bacteria include, without limitation, gram negative bacteria, in particular members of the Enterobacteriaceae, Vibrionaceae, Franci sellaceae,

Legionallales, Pseudomonadacea ou Pasteurellaceae, incluindo os generos Salmonella spp., Shigella spp., Escherichia spp., Yersinia spp., e Vibrio spp.Legionallales, Pseudomonadacea or Pasteurellaceae, including the genera Salmonella spp., Shigella spp., Escherichia spp., Yersinia spp., And Vibrio spp.

Em especial, bacterias patogenicas da presente invengao sao escolhidas dentre as especies que possuem em seu genoma pelo menos um gene codif icador de HU, preferencialmente, mas nao exclusivamente, S. enterica sorovar Typhimurium (662ST). Gene codificador de HUIn particular, pathogenic bacteria of the present invention are chosen from species having in their genome at least one HU coding gene, preferably, but not exclusively, S. enterica serovar Typhimurium (662ST). Gene HU Encoder

O gene codif icador de HU da presente invengao e uma sequencia de DNA que apresenta homologia de pelo menos 80% com pelo menos uma sequencia escolhida dentre hup A ou hupB, as quais sao escolhidas dentre as espdcies que possuem em s eu genoma pelo menos um gene codi f i cador de HU, preferencialmente, mas nao exclusivamente, S. enterica sorovar Typhimurium (662ST). Bacteria AtenuadaThe HU coding gene of the present invention is a DNA sequence that shows at least 80% homology to at least one sequence chosen from hup A or hupB, which are chosen from at least one genome species. HU coding gene, preferably, but not exclusively, S. enterica serovar Typhimurium (662ST). Attenuated Bacteria

Para efeitos da presente invengao, entende-se como bacteria atenuada uma bacteria patogenica que possui peloFor the purposes of the present invention, attenuated bacteria is understood to be a pathogenic bacterium having at least

menos um gene codificador de HU silenciado. Por ttSilenciamento" entende-se um processo de delegao de determinada sequencia do genoma de uma bacter i a. Em especial, ο silenciamento foi proporcionado por um cassete de recombinagao.least one mutated HU coding gene. By "Silencing" is meant a process of delegating a particular genome sequence of a bacterium. In particular, silencing has been provided by a recombinant cassette.

Cassete de recombinagaoRecombination Cassette

O cassete de recombinagao, de acordo com a presente invengao, e um cassete compreendendo pelo menos uma sequencia capaz de silenciar pelo menos um gene codificador de HU em uma bacteria patogenica.The recombinant cassette according to the present invention is a cassette comprising at least one sequence capable of silencing at least one HU encoding gene in a pathogenic bacterium.

O cassete de recombinagao e composto por iniciadores,The recombinant cassette is composed of primers,

que possuem 2 partes continuas, sendo a primeira uma sequencia de aproximadament e 4 O bases homo1ogas ao gene alvo e a segunda aproximadamente 20 bases homologas a uma regiao presente nos plasmideos a serem utilizados.which have 2 continuous parts, the first being a sequence of approximately 40 bases homologous to the target gene and the second approximately 20 bases homologous to a region present in the plasmids to be used.

As regioes de homologia com ο gene codificador de HURegions of homology with the HU encoding gene

foram selecionadas a partir da sequencia do banco de dados do projeto Genoma S. enterica (NC—003197) (Washington University, St. Louis, USA) e escolhidas de modo que fossem proximas aos codons de iniciagao e terminagao do gene.They were selected from the sequence of the Genome S. enterica project database (NC-003197) (Washington University, St. Louis, USA) and chosen so that they were close to the gene initiation and termination codons.

O cassete de recombinagao compreende ainda genesThe recombinant cassette further comprises genes

acessorios, como genes de resistencia a antibioticos. Processo de Transformagao e Recombinagaoaccessories such as antibiotic resistance genes. Transformation and Recombination Process

O processo de recombinagao das bacterias da presenteThe process of recombinating the bacteria of the present

invengao e um processo que se baseia no sistema de recombinagao XRed. O sistema de recombinagao XRed do bacteriof ago λ inclui 3 genes: γ, β e exo (presentes no plasmideo pKD46), que codificam respectivamente as proteinas Gam, Bet e Exo.Invention is a process that is based on the XRed recombination system. The bacteriophage λ XRed recombinant system includes 3 genes: γ, β and exo (present in plasmid pKD46), which encode the Gam, Bet and Exo proteins respectively.

Gam inibe ο sistema ExoV do hospedeiro, enquanto Bet eGam inhibits the host ExoV system, while Bet and

Exo promovem a recombinagao de fragmentos lineares no DNA alvo .Exo promote the recombination of linear fragments into the target DNA.

Os plasmideos acessorios contem genes de resistencia a antibioticos (KmR ou CmR) flanqueados por sitios FRT (FLP recombinase recognition targets) , formando ο modulo de recombinagao. Assim, estes plasmideos sao utilizados na criagao do cassete de recombinagao.Accessory plasmids contain antibiotic resistance genes (KmR or CmR) flanked by FRT (FLP recombinase recognition targets) sites, forming the recombinant module. Thus, these plasmids are used in the creation of the recombinant cassette.

Para a geragao do cassete de recombinagao, sequencias de aproximadamente 40 pb homologas ao gene alvo sao geradas nas extremidades desse modulo por PCR. Assim, ο cassete de recombinagao e ο modulo flanqueado por sequencias homologas ao gene alvo·For generation of the recombinant cassette, approximately 40 bp sequences homologated to the target gene are generated at the ends of that module by PCR. Thus, the recombinant cassette and module is flanked by sequences homologous to the target gene.

Para a geragao de mutantes, ο plasmideo ρKD46 e transformado por eletroporagao na linhagem hospedeira e os transfοrmantes sao submetidos a eletroporagao com ο cassete de recombinagao. A expressao dos genes γ, β e exo inibe a degradagao da fita linear de DNA, permitindo a recombinagaoFor generation of mutants, plasmid ρKD46 is transformed by electroporation into the host lineage and the transformants undergo electroporation with the recombinant cassette. Expression of the γ, β and exo genes inhibits the degradation of the linear strand of DNA, allowing recombination.

do cassete. Esta recombinaeao obedece a homologia de DNA conferida pelas sequencias flanqueadoras, de tal forma que a recombinagao envoivera sequencias homologas·from the cassette. This recombination follows the DNA homology conferred by the flanking sequences, such that the recombination will involve homologous sequences.

Os recombinantes sao entao selecionados utilizando-se as marcas de resistencias carreadas pelo modulo de recombinagao· Essas construgoes permitem uma subsequente remogao do cassete de resistencia pela FLP recombinase expressa por um gene plasmidial, no caso ο plasmideo pCP20. Desta forma, e possxvel construir delegoes ou insergoes de genes em bacterias entericas, utilizando fragmentos de DNAThe recombinants are then selected using the resistance tags carried by the recombinant module. These constructs allow subsequent removal of the resistance cassette by FLP recombinase expressed by a plasmid gene, in the case of plasmid pCP20. In this way, it is possible to construct gene deletions or insertions in enteric bacteria using DNA fragments.

lineares, gerados por PCR.generated by PCR.

Em especial, ο processo de transformagao da presente invengao compreende as etapas de:In particular, the process of transformation of the present invention comprises the steps of:

a) expressao das proteinas Gam, Bet e Exo do bacteriofago λ presentes no plasmideo pKD46, promovendo aa) expression of bacteriophage λ Gam, Bet and Exo proteins present in plasmid pKD46, promoting the

recombinagao de fragmentos lineares no DNA alvo; erecombination of linear fragments into the target DNA ; and

b) troca alelica do gene codif icador de HU pelo cassete de recombinagao compreendendo um gene acesscSrio,·b) allelic exchange of the HU encoding gene by the recombinant cassette comprising an accessory gene,

c) eliminagao do gene acess0rio presente no cassete de recombinagao.c) deletion of the accessory gene present in the recombinant cassette.

Linhasrens bacterianas selecionadas para mutageneseSelected bacterial lines for mutagenesis

Para este estudo foi selecionada uma linhagem selvagem virulenta de S. enter i ca, da sorovariedade Typhimuirium (662ST).For this study we selected a virulent S. enteri ca wild strain of the Typhimuirium serovarity (662ST).

As amostras selecionadas foram estocadas em glicerol 2,5 Μ, segundo protocolo descrito por Sambrook e Russell (2001) e incorporado a qui, por referenda, em sua totalidade.The selected samples were stored in 2.5 ol glycerol, according to the protocol described by Sambrook and Russell (2001) and incorporated here by reference, in their entirety.

Teste de sensibi 1 i dade das lihhagens de S· enterica Typhimurium a antibioticosSensitivity test of S · enterica Typhimurium lines to antibiotics

A susceptibilidade das linhagens selecionadas foi testada para os axitibi0ticos ampicilina, canamicina, cloramphenicol, estreptomicina e tetraciclina. Para isso, foi utilizado ο metodo de microdiluieao. Neste teste foi possivel observer uma ConcentragaoThe susceptibility of the selected strains was tested for ampicillin, kanamycin, chloramphenicol, streptomycin and tetracycline axitibiotics. For this, the microdilution method was used. In this test it was possible to observe a Concentration

工nibit0ria Minima (MIC) inferior a 10yg/mL para os antibicSticos ampicilina, cloranf enicol, estreptomicina e tetraciclina e MIC num irxtervalo de 10-25 pg/mL para canamicina. Este teste indicou que plasmxdeos com marcas de resistencia a ampicilina e ao cloranfenicol podem ser utilizados.Minimum nibitometry (MIC) of less than 10yg / ml for ampicillin, chloramphenicol, streptomycin and tetracycline antibiotics and MIC in a range of 10-25 pg / ml for kanamycin. This test indicated that ampicillin and chloramphenicol resistance-labeled plasmids can be used.

Sistema utilizado para mutageneseSystem used for mutagenesis

A mutagenese dos genes hup A e hup B foi obtida pelo sistema λ Red conforme descrito por Datsenko e Wanner (2000) e incorporada aqui, em sua totalidade, por referenda. Este sistema e constituido das linhagens e plasmideos demonstrados na Tabela 1.Mutagenesis of the hup A and hup B genes was obtained by the λ Red system as described by Datsenko and Wanner (2000) and incorporated herein in its entirety by reference. This system is made up of the strains and plasmids shown in Table 1.

Tabela 1 - Linhagens bacterianas com seus respectivos plasmídeos pertencentes ao sistema λ Red.Table 1 - Bacterial strains with their respective plasmids belonging to the λ Red system.

Linhagem Plasmídio Referência BT 340 pCP2 0 Datsenko e Wanner, 2000 BW25141 pKD3 Datsenko e Wanner, 2000 BW25141 pKD4 Datsenko e Wanner, 2000 BW25113 pKD46 Datsenko e Wanner, 2 000Plasmid Bloodline Reference BT 340 pCP2 0 Datsenko and Wanner, 2000 BW25141 pKD3 Datsenko and Wanner, 2000 BW25141 pKD4 Datsenko and Wanner, 2000 BW25113 pKD46 Datsenko and Wanner, 2000

Extração e purificação de plasmídeosPlasmid Extraction and Purification

Do estoque à -8O0C foi retirada uma amostra de cada cepa contendo os plasmídeos. A linhagem BW25113/pKD46 foi semeada em meio LB ágar contendo ampicilina (10(^g/mL); BW25141/pKD3 e BT340/pCP2 0 foram semeadas em meio LB ágar contendo ampicilina (100pg/mL) e cloranfenicol (25yg/mL).From the stock at -80 ° C a sample was taken from each strain containing the plasmids. BW25113 / pKD46 strain was seeded on ampicillin-containing LB agar medium (10 µg / ml); BW25141 / pKD3 and BT340 / pCP20 were seeded on ampicillin-containing LB agar (100pg / ml) and chloramphenicol (25yg / ml) .

Para extração e purificação dos plasmídeos pKD46 e pCP20, a temperatura de incubação utilizada foi 302 C, uma vez que tais plasmídeos contêm origem de replicação termo- sensível. Após a extração, os mesmos foram submetidos a eletroforese em gel de agarose 0,8% segundo o protocolo de Sambrook e Russell (2001), incorporada aqui, por referência, em sua totalidade. Iniciadores utilizados para gerar os cassetes de recombinaçãoFor extraction and purification of plasmids pKD46 and pCP20, the incubation temperature used was 302 C since such plasmids contain thermosensitive origin of replication. After extraction, they were subjected to 0.8% agarose gel electrophoresis according to the protocol of Sambrook and Russell (2001), incorporated herein by reference in its entirety. Primers used to generate the recombination cassettes

Os iniciadores para essa metodologia são compostos de 2 partes contínuas, sendo a primeira uma seqüência de aproximadamente 40 bases homólogas ao gene alvo e a segunda bases homólogas a uma região presente no plasmídeo pKD3.Primers for this methodology are composed of 2 continuous parts, the first being a sequence of approximately 40 bases homologous to the target gene and the second bases homologous to a region present in plasmid pKD3.

A região utilizada para amplificar a seqüência contida no plasmídeo foi selecionada através do programa Primer 3 (http://frodo.wi .mit.edu/cgi-bin/primer3/primer3_www.cgi), baseado na seqüência do plasmídeo pKD3 (AY048742) (Datsenko e Wanner, 2 001). Desse modo, foram desenhados os iniciadores hupA-f, hupA-r, hupB-f e hupB-r, descritos na Tabela 2.The region used to amplify the sequence contained in the plasmid was selected using the Primer 3 program (http: //frodo.wi .mit.edu / cgi-bin / primer3 / primer3_www.cgi), based on the plasmid pKD3 sequence (AY048742) (Datsenko and Wanner, 2001). Thus, the primers hupA-f, hupA-r, hupB-f and hupB-r, described in Table 2, were designed.

Tabela 2. Iniciadores utilizados na construção do cassete de recombinaçãoTable 2. Primers used in the construction of the recombination cassette

Primers Seqüência (5'-3') hupA-f (SEQ ID 1) TAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGGTGT AGGCTGGAGCTGCTTC hupA-r (SEQ ID 2) TTCGATAAAACTGTTCACAGTTATGCGTCTTACTTAACTGCCATAT GAATATCCTCCTTAGTTC hupB-f (SEQ ID 3) GGTGCGATATAAATTATAAAGAGGAAGAGAAGAGTGAATAAAGTGT AGGCTGGAGCTGCTTC hupB-r (SEQ ID 4) CTTTGTCACATCCCCCGAGGGGATCACGCTTAGTTTACCGCCATAT GAATATCCTCCTTAGTTCPrimer Sequence (5'-3 ') hupA-f (SEQ ID 1) TAGCAAGCGATAAACACATTGTAAGGATAACTTATGAACAAGGTGT AGGCTGGAGCTGCTTC hupA-r (SEQ ID 2) TTCGATAAAACTGTTCACAGTTATGCGTCTTACTTAACTGCCATAT GAATATCCTCCTTAGTTC hupB-f (SEQ ID 3) GGTGCGATATAAATTATAAAGAGGAAGAGAAGAGTGAATAAAGTGT AGGCTGGAGCTGCTTC hupB-r (SEQ ID 4) CTTTGTCACATCCCCCGAGGGGATCACGCTTAGTTTACCGCCATAT GAATATCCTCCTTAGTTC

Construção do cassete de recombinação por PCRPCR Recombination Cassette Construction

Para a construção do cassete de recombinação foram utilizados os iniciadores descritos anteriormente, para a amplificação de uma região do plasmídeo pKD3. As reações foram realizadas em volume final de 50 μΐ; contendo 2 0 pmol de cada iniciador, 20 a 3 0 ng de DNA plasmidial, ImM de cada dNTP, 2U de Taq DNA polimerase e 2 mM de MgCl2 em tampão apropriado provido com a enzima.For the construction of the recombination cassette the primers described above were used for amplification of a region of plasmid pKD3. Reactions were performed in a final volume of 50 μΐ; containing 20 pmol of each primer, 20 to 30 ng of plasmid DNA, ImM of each dNTP, 2U of Taq DNA polymerase and 2 mM of MgCl2 in appropriate buffer provided with the enzyme.

Para a reação de PCR, o DNA plasmidial foi desnaturado por aquecimento a 942 C por 2 minutos, e a amplificação realizada em 30 ciclos constituída dos seguintes passos: (1) denaturação a 94s C por 30 segundos; (2) "anelamento" a 562 C por 3 0 segundos; (3) extensão a 722 C por 1 minuto e 3 0 segundos. Procedeu-se uma extensão final por 5 minutos. O produto da PCR foi analisado por eletroforese em gel de agarose 1% (Sambrook e Russell, 2001).For the PCR reaction, plasmid DNA was denatured by heating at 942 C for 2 minutes, and amplification performed in 30 cycles consisting of the following steps: (1) denaturation at 94s C for 30 seconds; (2) "ringing" at 562 ° C for 30 seconds; (3) extension at 722 C for 1 minute and 30 seconds. A final extension was performed for 5 minutes. The PCR product was analyzed by 1% agarose gel electrophoresis (Sambrook and Russell, 2001).

Assim, os primers hupA-f, hupA-r, hupB-f e hupB-r foram utilizados para amplificar uma região de aproximadamente 1,2 Kbp (Anexo 1) do plasmídeo pKD3. A região amplificada foi utilizada para compor o cassete de recombinação com os genes hupA e hupB, respectivamente. Para fins ilustrativos, demonstra-se no Anexo 1 o cassete de recombinação gerado por PCR utilizando os primers hupA-f e hupA-r.Thus, the hupA-f, hupA-r, hupB-f and hupB-r primers were used to amplify an approximately 1.2 Kbp region (Annex 1) of plasmid pKD3. The amplified region was used to compose the recombination cassette with the hupA and hupB genes, respectively. For illustrative purposes, the PCR generated recombination cassette using the hupA-f and hupA-r primers is shown in Annex 1.

Sequenciamento de nucleotídeosNucleotide sequencing

2 0 0 sequenciamento de nucleotídeos foi realizado2 0 0 nucleotide sequencing was performed

conforme protocolos padrões. Os resultados são apresentados abaixo.according to standard protocols. The results are presented below.

Sobreposição do sequenciamento do duplo mutante AhupAAhupB com os primers hupBDT "forward" e "reverse": TCGTACTTCGAAGGATTCAGGTGCGATATAAATTATAAAGAGGAAGAGAAGAGTGAATA AAGTGTAGGCTGGAGCTGCTTGGAAGTTCCTATACTTTCTAGAGAATAGGAACTTCGGA ATAGGAACTAAGGAGGATATTCATATGGCGGTAAACTAAGCGTGATCCCCTCGGGGGAT GTGACAAAGTACAAGGGCGCATCAAC (SEQ ID No. 1) A sobreposição das bases sequenciadas a partir dosOverlay sequencing double mutant primers AhupAAhupB with hupBDT "forward" and "reverse": TCGTACTTCGAAGGATTCAGGTGCGATATAAATTATAAAGAGGAAGAGAAGAGTGAATA AAGTGTAGGCTGGAGCTGCTTGGAAGTTCCTATACTTTCTAGAGAATAGGAACTTCGGA ATAGGAACTAAGGAGGATATTCATATGGCGGTAAACTAAGCGTGATCCCCTCGGGGGAT GTGACAAAGTACAAGGGCGCATCAAC (SEQ ID No. 1) The overlap of bases sequenced from

primers hupBDT f e r (sublinhados) condizem a regiões flanqueadoras do gene hupB, não mais existente na linhagem duplo recombinante AhupAAhupBl conforme confirmado pela presença de uma cicatriz do plasmídio pKD3 no lugar desse gene (Box cinza).hupBDT f and r primers (underlined) match the flanking regions of the hupB gene, no longer existing in the double recombinant AhupAAhupBl strain as confirmed by the presence of a pKD3 plasmid scar in place of that gene (Box gray).

Duplo mutante AhupAAhupB sequenciado com primer hupADT2 f:Double mutant AhupAAhupB sequenced with hupADT2 f primer:

GGCTCAGGGCAGACCTGCGCGAGGCTGGCGAGAGCA-TATCGGTATAAATTTTCAGCAA TGACACCAGAAAACGTGATTTACGTCTGATTTGTCGTGCCATAAGGCTTCCCTTATGCC CCCCGTCTGGTCTACATTTGGGAGGC-AAAAAAAGTGGCTATCGGTGCGTGTATGCAGG AGAGTGCTTTTCTGGCATTTCC-TCGCACTC-ATGCTTAGCAAGCGATAAACACATTGT AAGGATAACTTATGAACAAGGTGTAGGCT6GAGCTGCTTCGAAGTTCCTATACTTTCTA GAGAATAGGAACTTCGGAATAGGAACTTCATTTAAATGGCGCGCCTTACGCCCCGCCCT GCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCA 2 0 CAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATA ATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAAT CAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAAC CCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTG TAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTT 2 5 GCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGCTCACCGTCT TTCATTGCCATACGTAATTCCGGATGAGCATTCATCAGGCGGGCAGATG-GAATAA-GC CG-ATAAACTTGTGCTTATTTTTCTTTACGTCTTAAAAGGCGTATATCA (SEQ ID No. 2) Neste caso a seqüência é maior, pois no local do gene hupA foi inserido o gene cat e regiões plasmidiais flanqueadoras (-1,2 kb) . No box cinza, está destacada a seqüência correspondente à região flanqueadora ao gene hupA de Salmonella, que logo em seguida é interrompida por seqüências presentes no plasmídio pKD3, correspondentes ao Pl e ao gene cat. Os traços simbolizam bases não identificadas no sequenciamento.GGCTCAGGGCAGACCTGCGCGAGGCTGGCGAGAGCA-TATCGGTATAAATTTTCAGCAA TGACACCAGAAAACGTGATTTACGTCTGATTTGTCGTGCCATAAGGCTTCCCTTATGCC CCCCGTCTGGTCTACATTTGGGAGGC-AAAAAAAGTGGCTATCGGTGCGTGTATGCAGG AGAGTGCTTTTCTGGCATTTCC-TCGCACTC-ATGCTTAGCAAGCGATAAACACATTGT AAGGATAACTTATGAACAAGGTGTAGGCT6GAGCTGCTTCGAAGTTCCTATACTTTCTA GAGAATAGGAACTTCGGAATAGGAACTTCATTTAAATGGCGCGCCTTACGCCCCGCCCT GCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCA 2 0 CAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATA ATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAAT CAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAAC CCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTG TAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTT 2-5 GCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGCTCACCGTCT TTCATTGCCATACGTAATTCCGGATGAGCATTCATCAGGCGGGCAGATG GAATAA GC-GC-ATAAACTTGTGCTTATTTTTCTTTACGTCTTAAAAGGCGTATATCA (SEQ ID No. 2) In this case the sequence is greater as the local of the hupA gene was inserted the c gene at and flanking plasmid regions (-1.2 kb). In the gray box, the sequence corresponding to the flanking region of the Salmonella hupA gene is highlighted, which is soon interrupted by sequences present in plasmid pKD3, corresponding to Pl and the cat gene. The strokes symbolize unidentified bases in sequencing.

Duplo mutante AhupAAhupB sequenciado com o primer hupADT2r (seqüência complementar e invertida):Double AhupAAhupB mutant sequenced with hupADT2r primer (complementary and inverted sequence):

CAAACCCTTTAGG-AAATAGGCCAGGTTT-CACCGTAACACG--ACATCTTGCGAATAT ATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTC AGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGCTCAC CGTCTTTCATTGCCATACGTAATTCCGGATGAGCATTCATCAGGCGGGCAAGAATGTGA ATAAAGGCCGGATAAAACTTGTGCTTATTTTTCTTTACGGTCTTTAAAAAGGCCGTAAT ATCCAGCTGAACGGTCTGGTTATAGGTACATTGAGCAACTGACTGAAATGCCTCAAAAT GTTCTTTACGATGCCATTGGGATATATCAACGGTGGTATATCCAGTGATTTTTTTCTCC ATTTTAGCTTCCTTAGCTCCTGAAAATCTCGACAACTCAAAAAATACGCCCGGTAGTGA TCTTATTTCATTATGGTGAAAGTTGGAACCTCTTACGTGCCGATCAACGTCTCATTTTC 2 0 GCCAAAAGTTGGCCCAGGGCTTCCCGGTATCAACAGGGACACCAGGATTTATTTATTCT GCGAAGTGATCTTCTGTC-CAGGT AGGCGCGCCGAAGTTCCTAT AC (SEQ ID No 3) .CAAACCCTTTAGG-AAATAGGCCAGGTTT-CACCGTAACACG - ACATCTTGCGAATAT ATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTC AGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGCTCAC CGTCTTTCATTGCCATACGTAATTCCGGATGAGCATTCATCAGGCGGGCAAGAATGTGA ATAAAGGCCGGATAAAACTTGTGCTTATTTTTCTTTACGGTCTTTAAAAAGGCCGTAAT ATCCAGCTGAACGGTCTGGTTATAGGTACATTGAGCAACTGACTGAAATGCCTCAAAAT GTTCTTTACGATGCCATTGGGATATATCAACGGTGGTATATCCAGTGATTTTTTTCTCC ATTTTAGCTTCCTTAGCTCCTGAAAATCTCGACAACTCAAAAAATACGCCCGGTAGTGA TCTTATTTCATTATGGTGAAAGTTGGAACCTCTTACGTGCCGATCAACGTCTCATTTTC 2 0 GCCAAAAGTTGGCCCAGGGCTTCCCGGTATCAACAGGGACACCAGGATTTATTTATTCT GCGAAGTGATCTTCTGTC-CAGGT AGGCGCGCCGAAGTTCCTAT AC (SEQ ID NO 3).

Nesse sequenciamento foram detectadas apenas bases referentes ao plasmídio pKD3, já que o início e o final da seqüência apresentaram baixa qualidade no eletroferograma e por isso foram desconsideradas. As regiões de alinhamento com o plasmidio correspondem a uma região do gene ca t (nucleotídeos 263 a 993 do plasmidio).In this sequencing, only bases referring to plasmid pKD3 were detected, since the beginning and the end of the sequence presented poor quality in the electropherogram and were therefore disregarded. Plasmid alignment regions correspond to a region of the ca t gene (nucleotides 263 to 993 of the plasmid).

Transformação das linhagens de S. enterica Typhimurium com o plasmídeo pKD46Transformation of S. enterica Typhimurium strains with plasmid pKD46

A transformação das linhagens selecionadas com o plasmídeo pKD46 foi realizada por eletroporação, seguindo protocolo descrito em Ausubel et ai. (2007), incorporado aqui, por referência, em sua totalidade.Transformation of the selected strains with plasmid pKD46 was performed by electroporation following the protocol described in Ausubel et al. (2007), incorporated herein by reference in its entirety.

O eletroporador (Eletroporador Bio Rad. Gene Pulser II, Hercules - CA, USA) foi ajustado para 1,5 KV, 25 pF e 200 ohms e cubetas de 0,1 cm foram utilizadas. As amostras foram eletroporadas então incubadas por 1 hora em meio SOC. Posteriormente as culturas foram plaqueadas em meio LB ágar provido de ampicilina (100 ug/mL) e incubadas à 30aC durante a noite.The electroporator (Bio Rad Gene Pulser II Electroporator, Hercules - CA, USA) was adjusted to 1.5 KV, 25 pF and 200 ohms and 0.1 cm cuvettes were used. The samples were electroporated then incubated for 1 hour in SOC medium. Subsequently the cultures were plated on ampicillin-supplied LB agar medium (100 µg / ml) and incubated at 30 ° C overnight.

A presença do plasmídeo foi avaliada pela análise do perfil plasmidial por eletroforese em gel de agarose. As linhagens selecionadas foram estocadas em glicerol 2,5 M segundo protocolo proposto por Sambrook e Russell (2001). Troca alélica dos genes hupA e hupB pelo cassete de recombinaçãoThe presence of the plasmid was evaluated by analysis of the plasmid profile by agarose gel electrophoresis. The selected strains were stored in glycerol 2.5 M according to protocol proposed by Sambrook and Russell (2001). Allelic exchange of hupA and hupB genes by the recombination cassette

Para a etapa de recombinação gênica foi utilizada a linhagem 662ST/pKD46, como descrito anteriormente, e o cassete de recombinação gerado por PCR.For the gene recombination step the 662ST / pKD46 strain was used as described above and the PCR generated recombination cassette.

0 preparo das células competentes foi feito partindo- se de um pré-inóculo com 5 mL de meio LB provido de ampicilina (100 yg/mL), que foi incubado durante a noite à 3 0 aC. Desta cultura 0,5 mL foram inoculados em 50 mL de meio LB com o mesmo antibiótico e ImM de L-arabinose (Sigma), usado como indutor da expressão dos genes γ, β, e exo, sendo esta nova cultura crescida à 30 sC sob agitação (150 rpm) até atingir D.06oo de 0,7. Os frascos foram resfriados em banho de gelo por 15 minutos e as culturas foram centrifugadas por 10 minutos à 5000 g (4e C) . O precipitado foi ressuspendido em 4 mL de água deionizada esterilizada previamente resfriada a 4 sC e centrifugado novamente nas mesmas condições. Esta etapa de lavagem foi repetida três vezes utilizando-se glicerol 10% e o sedimento formado após a última lavagem foi ressuspendido em 400 pL e distribuído em alíquotas de 90 pL pelo protocolo de Sambrook e Russell (2 001) e incorporado aqui, por referência, em sua totalidade.Competent cells were prepared from a pre-inoculum with 5 ml ampicillin-provided LB medium (100 µg / ml), which was incubated overnight at 30 ° C. From this culture 0.5 ml were inoculated in 50 ml LB medium with the same antibiotic and ImM L-arabinose (Sigma), used to induce expression of γ, β, and exo genes, and this new culture was grown at 30 sC under stirring (150 rpm) until reaching 0.160 D of 0.7. The flasks were cooled in an ice bath for 15 minutes and the cultures were centrifuged for 10 minutes at 5000 g (4e C). The precipitate was resuspended in 4 mL sterile deionized water previously cooled to 4 sC and centrifuged again under the same conditions. This wash step was repeated three times using 10% glycerol and the pellet formed after the last wash was resuspended at 400 pL and distributed into 90 pL aliquots by the Sambrook and Russell protocol (2,001) and incorporated herein by reference. , in its entirety.

Foram selecionados três tubos contendo as alíquotas aos quais foram adicionados 10 pL do produto gerado pela PCR; esses foram colocados em gelo por 1 minuto. O eletroporador foi ajustado para 1,5 KV, 25 yF e 200 ohms e as amostras eletroporadas e recolhidas em meio SOC, onde foram incubadas à 37a C por 1 hora e depois plaqueadas em meio LB-ágar com cloranfenicol (25ug/mL). As culturas foram incubadas durante a noite à 37 2C. Das colônias crescidas, foram selecionadas algumas para a confirmação por PCR, sendo denominadas 662STAhupACmR e 662STÁhupBCmR. As colônias selecionadas foram estocadas em glicerol 2,5 M segundo protocolo proposto por Sambrook e Russell (2001), e incorporado aqui, por referência, em sua totalidade. Em seguida, o plasmídio pKD46 foi curado.Three tubes containing the aliquots were selected to which 10 pL of the PCR product was added; These were placed on ice for 1 minute. The electroporator was adjusted to 1.5 KV, 25 yF and 200 ohms and the samples electroporated and collected in SOC medium, where they were incubated at 37 ° C for 1 hour and then plated on chloramphenicol LB-agar medium (25ug / mL). Cultures were incubated overnight at 37 ° C. From the grown colonies, some were selected for confirmation by PCR, being named 662STAhupACmR and 662STÁhupBCmR. The selected colonies were stored in 2.5 M glycerol according to the protocol proposed by Sambrook and Russell (2001), and incorporated herein by reference in their entirety. Plasmid pKD46 was then cured.

Eliminação do gene cat de resistência ao antibióticoElimination of antibiotic resistance cat gene

Para a eliminação do gene de resistência ao antibiótico, foram utilizadas células competentes preparadas das linhagens 662STAhupACmR e 662STAhupBCmR e o plasmídeo pCP20. A eletroporação foi feita conforme descrito anteriormente e os transformantes foram selecionados em placas de LB-ágar com ampicilina (100 pg/mL). As placas foram incubadas durante a noite à 30 aC. Algumas das colônias crescidas foram selecionadas para confirmação por PCR e denominadas 662STàhupA e 662STkhupB. Estas linhagens foram estocadas em glicerol 2, 5M como descrito anteriormente por Sambrook e Russell (2001) e incorporado aqui, por referência, em sua totalidade. Detecção e caracterização das mutações em hupA e hupB por PCRFor elimination of the antibiotic resistance gene, competent cells prepared from 662STAhupACmR and 662STAhupBCmR strains and plasmid pCP20 were used. Electroporation was performed as previously described and transformants were selected on ampicillin LB-agar plates (100 pg / mL). The plates were incubated overnight at 30 ° C. Some of the grown colonies were selected for PCR confirmation and named 662STàhupA and 662STkhupB. These strains were stored in 2.5M glycerol as previously described by Sambrook and Russell (2001) and incorporated herein by reference in their entirety. Detection and characterization of hupA and hupB mutations by PCR

Detecção do gene catCat gene detection

0 gene cat (chloramphenicol acetyl transferase) nos mutantes de S. enterica foi inicialmente detectado por PCR. Foi desenhado um par de iniciadores internos a este gene, tendo-se como base a seqüência do plasmídeo pKD3 (AY048742) (Datsenko e Wanner, 2001) e constituinte do cassete de recombinação. Estes foram desenhados com o software Primer 3(http://frodo.wi.mit.edu/cgi-bin/primer3/primer3_www.cgi). Os iniciadores estão demonstrados na Tabela 3.The cat gene (chloramphenicol acetyl transferase) in S. enterica mutants was initially detected by PCR. A pair of primers internal to this gene were designed based on the sequence of plasmid pKD3 (AY048742) (Datsenko and Wanner, 2001) and constituent of the recombination cassette. These were designed with the Primer 3 software (http://frodo.wi.mit.edu/cgi-bin/primer3/primer3_www.cgi). Primers are shown in Table 3.

Tabela 3 - Seqüência dos iniciadores utilizados para detecção do gene catTable 3 - Sequence of primers used for cat gene detection

Iniciador Seqüência Referência cmDT - f (SEQ ID 5) 5'-GAACTTCGGAATAGGAACTTCA-3' Mendes et al., não publicado cmDT - r (SEQ ID 6) 5'-TGTGACGGAAGATCACTTCG-3 ' Mendes et al., não publicadoPrimer String Reference cmDT - f (SEQ ID 5) 5'-GAACTTCGGAATAGGAACTTCA-3 'Mendes et al., Unpublished cmDT - r (SEQ ID 6) 5'-TGTGACGGAAGATCACTTCG-3' Mendes et al., Unpublished

* Estes primers já constaram de tuna publicação.* These primers have already been published.

As reações foram realizadas em volume final de 50 pLReactions were performed in a final volume of 50 pL

contendo 2 0 pmol de cada iniciador, 20 a 3 0 ng de DNA genômico de cada transformante, ImM de cada dNTP, 2U de Taq DNA polimerase e 2 mM de MgCl2 em tampão apropriado provido com a enzima. Para a reação de PCR, o DNA genômico foi desnaturado por aquecimento a 94 eC por 2 minutos e a amplificação realizada em 35 ciclos constituída dos seguintes passos: (1) denaturação a 94 2C por 3 0 segundos; (2) "anelamento" a 55 aC por 3 0 segundos; (3) extensão a 72 2C por 1 minuto. Procedeu-se uma extensão final por 5 minutos. O produto da PCR foi analisado por eletroforese em gel de agarose 1% utilizado o protocolo descrito por Sambrook e Russell (2001), incorporado aqui, por referência, em sua totalidade.containing 20 pmol of each primer, 20 to 30 ng of genomic DNA of each transformant, ImM of each dNTP, 2U of Taq DNA polymerase and 2 mM of MgCl2 in appropriate buffer provided with the enzyme. For the PCR reaction, genomic DNA was denatured by heating at 94 ° C for 2 minutes and amplification performed in 35 cycles consisting of the following steps: (1) denaturation at 94 ° C for 30 seconds; (2) "ringing" at 55 BC for 30 seconds; (3) extension at 72 ° C for 1 minute. A final extension was performed for 5 minutes. The PCR product was analyzed by 1% agarose gel electrophoresis using the protocol described by Sambrook and Russell (2001), incorporated herein by reference in its entirety.

Detecção das mutações por iniciadores externos aos genes hupA e hupBDetection of mutations by primers external to hupA and hupB genes

Foram construídos dois pares de iniciadores externos aos genes hupA e um par a hupB para a detecção das mutagêneses (Tabela 4). Esses foram desenhados com o auxílio do software Primer 3 (http://frodo.wi.mit.edu/cgi- bin/primer3/primer3_www.cgi) , baseado na seqüência de S. enterica Typhimurium LT2 (NC_003197).Two primer pairs external to the hupA genes and one hupB pair were constructed for mutagenesis detection (Table 4). These were designed with the aid of the Primer 3 software (http://frodo.wi.mit.edu/cgi- bin / primer3 / primer3_www.cgi), based on the sequence of S. enterica Typhimurium LT2 (NC_003197).

Tabela 4 - Seqüência dos iniciadores externos aos genes 2 0 hupA e hupBTable 4 - Sequence of primers external to 20 hupA and hupB genes

Primers Seqüência (5'-3') hupADTl-f (SEQ ID 4) AGTGCTTTTCTGGCATTTCC hupADTl-r (SEQ ID 5) ACAGACAAAAGGGGC TGATG ■hupADT2-f (SEQ ID 6) CGACTGCGAAGAACGTGATA .hupADT2-r (SEQ ID 7) AAAGCCGCTGGCAGTAAAC hupEDT-f (SEQ ID 8) TCGTACTTCGAAGGATTCAGG hupEDT-r (SEQ ID 9) GTTGATGCGCCCTTGTACTTPrimers Sequence (5'-3 ') hupADTl-f (SEQ ID 4) AGTGCTTTTCTGGCATTTCC hupADTl-r (SEQ ID 5) ACAGACAAAAGGGG TGATG ■ hupADT2-f (SEQ ID 6) CGACTGCGAAGAACGTGATAGAGATAGTTAATAGTGATAGAGATAGTGATAGAGATAGTTAATAGTAGAG f (SEQ ID 8) TCGTACTTCGAAGGATTCAGG hupEDT-r (SEQ ID 9) GTTGATGCGCCCTTGTACTT

Transdução com bacteriófago P22P22 bacteriophage transduction

A seleção de recombinantes de S. enterica por eletroporação muitas vezes seleciona linhagens contendo LPS (lipopolissacarídeos) incompletos, já que estes são mais facilmente transformáveis, mas são mais sensíveis ao sistema imune e muitas vezes incapazes de estabelecer uma infecção sistêmica em camundongos.Selecting electroporation of S. enterica recombinants often selects strains containing incomplete LPS (lipopolysaccharides) as they are more easily transformable but are more sensitive to the immune system and often unable to establish a systemic infection in mice.

Para realizar a transdução a bactéria recombinante doadora foi cultivada em 3 ml de LB sem antibiótico durante a noite a 37 °C. No dia seguinte, uma alíquota de 100 μL do fago foi adicionada a 900 μL de LB fresco, atingindo a densidade de aproximadamente IO9 UFC/mL. Essa alíquota de 1 ml foi adicionada ao pré-inóculo cultivado, com uma densidade bacteriana de aproximadamente IO9 UFC/mL.To perform the transduction the donor recombinant bacterium was grown in 3 ml LB without antibiotic overnight at 37 ° C. The next day, a 100 μL aliquot of phage was added to 900 μL fresh LB, reaching a density of approximately 109 CFU / mL. This 1 ml aliquot was added to the cultured pre-inoculum with a bacterial density of approximately 109 CFU / mL.

A cultura foi então novamente cultivada na estufa a 37 0C durante a noite. Nesse mesmo dia, a linhagem selvagem 662ST também foi cultivada em 3 ml de LB na estufa a 37 0C durante a noite. Como controle, o bacteriófago foi plaqueado em LB Ágar, para verificação de contaminação bacteriana.The culture was then again grown in the greenhouse at 37 ° C overnight. That same day, the 662ST wild strain was also grown in 3 ml LB in the greenhouse at 37 ° C overnight. As a control, the bacteriophage was plated on LB Agar for bacterial contamination.

No terceiro dia, a cultura com a bactéria doadora e o fago foi centrifugada a 5000 g por 10 minutos a 4 °C, para que as bactérias sedimentassem, separando-se do fago. Para garantir o isolamento de fagos e bactérias, o sobrenadante foi cuidadosamente filtrado e armazenado em um novo recipiente. Como controle o sobrenadante foi estriado em LB Ágar para verificar se não houve resquício de bactérias. Alíquotas de fagos e bactérias selvagens receptorasOn the third day, the culture with donor bacteria and phage was centrifuged at 5000 g for 10 minutes at 4 ° C to allow the bacteria to settle away from the phage. To insulate phage and bacteria isolation, the supernatant was carefully filtered and stored in a new container. As a control the supernatant was streaked on LB Agar to verify that there was no trace of bacteria. Aliquots of phage and receptor wild bacteria

foram misturadas, seguindo-se as seguintes proporções: 10 μΐ de fago + 100 μΐ de bactéria; 50 μΐ de fago + 100 μΐ de bactéria; 50 μΐ de fago + 50 μΐ de bactéria e 10 μΐ de fago + 50 μΐ de bactéria. Os recipientes contendo fagos e bactérias foram incubados a 37 0C por 20 minutos para a adsorção. Após esse período, as alíquotas foram plaqueadas em LB Ágar com cloranfenicol para a seleção das bactérias transduzidas. No dia seguinte, as colônias crescidas foram repicadas para os meios seletivos SS, MacConkey com cloranfenicol e novamente para LB com cloranfenicol e novo PCR de confirmação com os primers Cmdt e hupAãt ou hupBãt foi realizado.were mixed in the following proportions: 10 μΐ phage + 100 μΐ bacteria; 50 μΐ phage + 100 μΐ bacteria; 50 μΐ of phage + 50 μΐ of bacteria and 10 μΐ of phage + 50 μΐ of bacteria. Containers containing phage and bacteria were incubated at 37 ° C for 20 minutes for adsorption. After this period, aliquots were plated on LB Agar with chloramphenicol for selection of transduced bacteria. The following day, the grown colonies were picked for SS, MacConkey with chloramphenicol selective media and again for LB with chloramphenicol and new confirmatory PCR with Cmdt and hupAat or hupBat primers was performed.

Caracterização dos mutantes AhupA, AhupB e AhupAAhupB de S. entericaCharacterization of AhupA, AhupB and AhupAAhupB mutants from S. enterica

Curva de crescimento in vitroIn vitro growth curve

As linhagens recombinantes foram inoculadas em 5 mL de meio LB e incubadas à 37 sC durante a noite. No dia seguinte, 500 μL do pré-inóculo foi adicionado à 50 mL de meio LB 1% glicose e a nova cultura incubada à 37 2C sob agitação (150 rpm), sendo retiradas alíquotas a cada hora, durante cinco horas e diluições seriadas foram plaqueadas em triplicata sobre LB-ágar para contabilização no dia seguinte.Recombinant strains were inoculated in 5 ml LB medium and incubated at 37 ° C overnight. The next day, 500 μL of the pre-inoculum was added to 50 ml of 1% LB glucose medium and the new culture incubated at 37 ° C under shaking (150 rpm), aliquots were taken every hour for five hours and serial dilutions were made. in triplicate on LB-agar for next day accounting.

A comparação das curvas exibidas pelas linhagens apresentou algumas diferenças no crescimento. Determinação da Dose Letal Média (DL50) por via oral em CamundongosThe comparison of the curves displayed by the strains showed some differences in growth. Oral Lethal Dose Determination (LD50) in Mice

Para determinação da DL50 por via oral, as linhagens 662ST, 662STAhupA, 662STAhupB e 662STAhupAAhupB foram cultivadas em meio LB a 37 2C durante a noite. No dia seguinte, 0,5 mL dessas culturas foram inoculados em 50 mL de meio LB-glicose 1% e incubado a 37 sC sob agitação (150rpm) até que atingissem o título desejado. As células foram sedimentadas por centrifugação (5000g por 5 min) e lavadas no mesmo volume de tampão salina-fosfato (PBS, pH 7,4). Este passo foi repetido uma segunda vez e o sedimento ressuspendido em PBS (mesmo volume inicial). Diluições seriadas foram preparadas em PBS e usadas para infectar camundongos BALB/c fêmeas com 6 a 8 semanas. As diluições foram plaqueadas em meio LB-ágar para a determinação da UFC. O inóculo via oral foi feito utilizando agulha de gavagem modelo IC800 (INSIGHT, Ribeirão Preto-SP, Brasil).For oral LD50 determination, 662ST, 662STAhupA, 662STAhupB and 662STAhupAAhupB strains were grown in LB medium at 37 ° C overnight. The next day, 0.5 mL of these cultures were inoculated into 50 mL of 1% LB-glucose medium and incubated at 37 sC with shaking (150rpm) until they reached the desired titer. Cells were pelleted by centrifugation (5000g for 5 min) and washed in the same volume of saline phosphate buffer (PBS, pH 7.4). This step was repeated a second time and the pellet resuspended in PBS (same initial volume). Serial dilutions were prepared in PBS and used to infect 6 to 8 week old female BALB / c mice. Dilutions were plated on LB-agar medium for CFU determination. The oral inoculum was made using an IC800 model needle (INSIGHT, Ribeirão Preto-SP, Brazil).

A quantidade de bactérias inoculadas variou de acordo com cada grupo, de IO2 à IO9 UFC/mL, sendo utilizados três camundongos por diluição. Os animais foram acompanhados por 3 0 dias após a administração do inóculo.The amount of inoculated bacteria varied according to each group, from 10 2 to 10 9 CFU / mL, using three mice per dilution. The animals were followed for 30 days after inoculum administration.

Os valores de DL50 por via oral em camundongos BALB/c foram calculados pelo método "Moving Average Interpolation" (Welkos e 0'Brien, 1994). 2 0 Tabela 5 - DL50 de linhagens de S. enterica inoculadas por via oral em camundongos BALB/cOral LD50 values in BALB / c mice were calculated by the Moving Average Interpolation method (Welkos and O'Brien, 1994). 2 0 Table 5 - LD50 of S. enterica strains orally inoculated in BALB / c mice

Linhagem DL50 (CFU.mL-1) Referência 662ST 1,5 χ IO4 Presente invenção 662STAhupA 3,2 χ IO7 Presente invenção 662STAhupB 3,5 χ IOb Presente invenção 662STAhupAAhupB > IO8 Presente invençãoDL50 strain (CFU.mL-1) Reference 662ST 1,5 χ IO4 Present invention 662STAhupA 3,2 χ IO7 Present invention 662STAhupB 3,5 χ IOb Present invention 662STAhupAAhupB> IO8 Present invention

É importante salientar que de experimento para experimento existe alguma variação nos valores de DL50, uma vez que este é um experimento que envolve várias variáveis biológicas.It is important to note that from experiment to experiment there is some variation in the LD50 values, as this is an experiment involving several biological variables.

Desafio via oralOral Challenge

A capacidade de desencadear resposta imune contra S. enterica foi testada em dois momentos: No primeiro, os animais foram imunizados com uma única dose de S. enterica e desafiados 2 8 dias após a mesma. Em um segundo experimento, animais foram imunizadosThe ability to elicit immune response against S. enterica was tested at two times: In the first, the animals were immunized with a single dose of S. enterica and challenged 28 days thereafter. In a second experiment, animals were immunized

oralmente com duas doses da linhagem duplo mutante nos dias 0 e 14 e desafiados com a linhagem selvagem no 3 0° dia após a segunda dose. Os experimentos posteriores de desafio prosseguiram para a linhagem duplo mutante, já que esta apresentou os resultados mais promissores.orally with two doses of the double mutant strain on days 0 and 14 and challenged with the wild strain on day 30 after the second dose. Subsequent challenge experiments continued for the double mutant strain, as it yielded the most promising results.

A dose (UFC) utilizada foi de IO8 para a linhagem duplo mutante, dose esta estabelecida a partir dos ensaios prévios. Os animais foram desafiados com doses de IO7 CFU de linhagem ST662. Para estes experimentos foram utilizados 7 camundongos BALB/c fêmeas com 6 a 8 semanas de idade por grupo. Os animais foram acompanhados por 3 0 dias após o desafio e avaliados quanto à sua sobrevivência.The dose (CFU) used was 108 for the double mutant strain, a dose established from previous trials. The animals were challenged with 10 7 CFU doses of ST662 strain. For these experiments 7 female BALB / c mice 6 to 8 weeks old per group were used. The animals were followed for 30 days after challenge and evaluated for survival.

Nas imunizações duplas com 662STAhupAAhupB todos os animais sobreviveram ao desafio com a linhagem selvagem enquanto que o grupo com imunização única apresentou uma taxa de 85% após 30 dias de experimento. Os animais do grupo placebo, inoculados com PBS, morreram entre o 52 e o IO2 dia após serem desafiados com as linhagens selvagens.In the 662STAhupAAhupB double immunizations all animals survived the challenge with the wild strain while the single immunization group showed an 85% rate after 30 days of experiment. Placebo animals, inoculated with PBS, died between 52 and 10 days after being challenged with wild lines.

Algumas variações na taxa de sobrevivência dos camundongos com imunização dose única foram observadas entre diferentes experimentos.Some variations in the survival rate of mice with single dose immunization were observed between different experiments.

Como pode ser observada, a presente invenção possibilita o uso de um vetor vacinai vivo para oAs can be seen, the present invention enables the use of a live vaccine vector for

desenvolvimento de vacinas contra a salmonelose e outras doenças, com propriedades imunogênicas próprias, já que as linhagens atenuadas desenvolvidas podem ser empregadas na entrega de antígenos heterólogos ao sistema imune do hospedeiro.development of vaccines against salmonellosis and other diseases, with their own immunogenic properties, as the attenuated strains developed may be employed in the delivery of heterologous antigens to the host immune system.

Adicionalmente, a presente invenção possibilita aAdditionally, the present invention enables the

utilização como vacina viva para induzir proteção contra salmonelose; um potencial uso como vetor vacinai multifatorial, ou seja, as linhagens atenuadas podem expressar antigenos de outras doenças; alem da utilização BALB/c fêmeas com 6 a 8 semanas de idade por grupo. Os animais foram acompanhados por 30 dias após o desafio e avaliados quanto à sua sobrevivência.use as a live vaccine to induce protection against salmonellosis; potential use as a multifactorial vaccine vector, ie attenuated strains may express antigens from other diseases; in addition to using BALB / c 6 to 8 week old females per group. The animals were followed for 30 days after challenge and evaluated for their survival.

Nas imunizações duplas com 662STÁhupAAhupB todos os animais sobreviveram ao desafio com a linhagem selvagem enquanto que o grupo com imunização única apresentou uma taxa de 85% após 3 0 dias de experimento. Os animais do grupo placebo, inoculados com PBS, morreram entre o 5a e o 10a dia após serem desafiados com as linhagens selvagens.In the 662STÁhupAAhupB double immunizations all animals survived the challenge with the wild strain while the single immunization group showed an 85% rate after 30 days of experiment. Placebo animals, inoculated with PBS, died between days 5 and 10 after being challenged with wild lines.

Algumas variações na taxa de sobrevivência dos camundongos com imunização dose única foram observadas entre diferentes experimentos.Some variations in the survival rate of mice with single dose immunization were observed between different experiments.

Como pode ser observada, a presente invenção possibilita o uso de um vetor vacinai vivo para oAs can be seen, the present invention enables the use of a live vaccine vector for

desenvolvimento de vacinas contra a salmonelose e outras doenças, com propriedades imunogênicas próprias, já que as linhagens atenuadas desenvolvidas podem ser empregadas na entrega de antígenos heterólogos ao sistema imune do hospedeiro.development of vaccines against salmonellosis and other diseases, with their own immunogenic properties, as the attenuated strains developed may be employed in the delivery of heterologous antigens to the host immune system.

Adicionalmente, a presente invenção possibilita aAdditionally, the present invention enables the

utilização como vacina viva para induzir proteção contra salmonelose; um potencial uso como vetor vacinai multifatorial, ou seja, as linhagens atenuadas podem expressar antígenos de outras doenças; alem da utilização na terapia contra o câncer.use as a live vaccine to induce protection against salmonellosis; potential use as a multifactorial vaccine vector, ie attenuated strains may express antigens from other diseases; in addition to use in cancer therapy.

Salmonella enterica vem sendo utilizada como agente biológico no tratamento de alguns tipos de tumores sólidos. Isso porque esta bactéria apresenta tropismo para massas tumorais. 0 tratamento de diferentes tumores com S. enterica tem resultado em diminuição ou mesmo desaparecimento da massa tumoral. No entanto, para este tipo de emprego, a linhagem deve ser atenuada. Assim, as linhagens mutantes desenvolvidas da presente invenção apresentam o potencial de serem utilizadas na terapia de tumores. No entanto, estudos específicos são necessários para verificar este potencial e indicar outras modificações nas linhagens de S. enterica que eventualmente sejam necessárias.Salmonella enterica has been used as a biological agent in the treatment of some types of solid tumors. This is because this bacterium presents tropism for tumor masses. Treatment of different tumors with S. enterica has resulted in a decrease or even disappearance of the tumor mass. However, for this type of employment, lineage must be attenuated. Thus, the developed mutant strains of the present invention have the potential to be used in tumor therapy. However, specific studies are needed to verify this potential and to indicate other modifications in S. enterica strains that may be necessary.

A linhagem duplo mutante (662STAhupAAhupB) aindaThe double mutant lineage (662STAhupAAhupB) still

apresenta a vantagem adicional de menor probabilidade de reversão da atenuação para os níveis de patogenicidade da linhagem selvagem, já que dois genes foram nocauteados. Essa vantagem não está presente em linhagens com mutação 2 0 única, já que a reaquisição do gene perdido poderia recuperar a virulência total da linhagem.It has the additional advantage of lower probability of reversal of attenuation to pathogenicity levels of the wild strain, since two genes were knocked out. This advantage is not present in single mutated 20 strains, as reacquisition of the lost gene could restore the total virulence of the strain.

A presente invenção tem utilização como vacina viva para induzir proteção contra salmonelose ou como potencial uso como vetor vacinai multifatorial, ou seja, as linhagens atenuadas podem expressar antígenos de outros patógenos.The present invention has use as a live vaccine to induce protection against salmonellosis or as potential use as a multifactorial vaccine vector, that is, attenuated strains may express antigens from other pathogens.

Adicionalmente a presente invenção pode ser utilizada na terapia contra o câncer. Salmonella enterica vem sendo utilizada como agente biológico no tratamento de alguns tipos de tumores sólidos. Isso porque esta bactéria apresenta tropismo para massas tumorais. 0 tratamento de diferentes tumores com S. enterica tem resultado em diminuição ou mesmo desaparecimento da massa tumoral. No entanto, para este tipo de emprego, a linhagem deve ser atenuada. Assim, as linhagens mutantes desenvolvidas da presente invenção apresentam o potencial de serem utilizadas na terapia de tumores.Additionally the present invention may be used in cancer therapy. Salmonella enterica has been used as a biological agent in the treatment of some types of solid tumors. This is because this bacterium presents tropism for tumor masses. Treatment of different tumors with S. enterica has resulted in a decrease or even disappearance of the tumor mass. However, for this type of employment, lineage must be attenuated. Thus, the developed mutant strains of the present invention have the potential to be used in tumor therapy.

Assim, embora tenham sido mostradas apenas algumas modalidades da presente invenção, será entendido que várias omissões, substituições e alterações no processo de construção da linhagem atenuada de Salmonella enterica podem ser feitas por um técnico versado no assunto, sem se afastar do espirito e escopo da presente invenção.Thus, while only a few embodiments of the present invention have been shown, it will be appreciated that various omissions, substitutions and alterations in the process of constructing the attenuated Salmonella enterica lineage may be made by one of ordinary skill in the art without departing from the spirit and scope of the invention. present invention.

É expressamente previsto que todas as combinações dos elementos que desempenham a mesma função substancialmente da mesma forma para alcançar os mesmos resultados estão dentro do escopo da invenção. Substituições de elementos de uma modalidade descrita para outro são também totalmente pretendidos e contemplados. Também é preciso entender que os desenhos não estão necessariamente em escala, mas que eles são apenas de natureza conceituai. A intenção é, portanto, ser limitada, tal como indicado pelo escopo das reivindicações anexas. ReferênciasIt is expressly provided that all combinations of elements that perform the same function in substantially the same way to achieve the same results are within the scope of the invention. Substitutions of elements from one described embodiment to another are also fully intended and contemplated. One must also understand that the drawings are not necessarily to scale, but that they are only of a conceptual nature. The intent is therefore to be limited as indicated by the scope of the appended claims. References

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Claims (39)

1. Processo de construção de linhagem atenuada mutante de uma bactéria patogênica caracterizado pelo fato de que compreendem as seguintes etapas: a) expressão das proteínas Gam, Bet e Exo do bacteriófago λ presentes no plasmídeo pKD46, promovendo a recombinação de fragmentos lineares no DNA alvo; b) troca alélica do gene codificador de HU pelo cassete de recombinação compreendendo um gene acessório; e c) eliminação do gene acessório presente no cassete de recombinação.1. Process of constructing mutated attenuated lineage of a pathogenic bacterium characterized by the fact that they comprise the following steps: a) expression of the bacteriophage λ Gam, Bet and Exo proteins present in plasmid pKD46, promoting the recombination of linear fragments into the target DNA ; b) allelic exchange of the HU encoding gene by the recombination cassette comprising an accessory gene; and c) deletion of the accessory gene present in the recombination cassette. 2. Processo, de acordo com a reivindicação 1, caracterizado pelo fato de que a bactéria patogênica é selecionado do grupo compreendido por Enterobacteriaceae, Vibrionaceae, Francisellaceae, Legionallales, Pseudomonadacea ou Pasteurellaceae, incluindo os gêneros Salmonella spp., Shigella spp., Eseheriehia spp., Yersinia spp., e Vibrio sppProcess according to Claim 1, characterized in that the pathogenic bacterium is selected from the group consisting of Enterobacteriaceae, Vibrionaceae, Francisellaceae, Legionallales, Pseudomonadacea or Pasteurellaceae, including the genera Salmonella spp., Shigella spp., Eseheriehia spp. ., Yersinia spp., And Vibrio spp. 3. Processo, de acordo com a reivindicação 2, caracterizado pelo fato de que a bactéria patogênica ainda ser escolhida dentre Salmonella spp., Shigella spp., Eseheriehia spp., Yersinia spp., e Vibrio spp.Process according to claim 2, characterized in that the pathogenic bacterium is still chosen from Salmonella spp., Shigella spp., Eseheriehia spp., Yersinia spp., And Vibrio spp. 4. . Processo, de acordo com a reivindicação 3, caracterizada pelo fato de que a bactéria patogênica é preferencialmente a bactéria S. enterica sorovar Typhimurium (ST662).4.. Process according to Claim 3, characterized in that the pathogenic bacterium is preferably S. enterica serovar Typhimurium (ST662). 5. Processo, de acordo com a reivindicação 1, caracterizado pelo fato de que o gene codificador de HU é uma seqüência de DNA que apresenta homologia de pelo menos 80% com pelo menos uma seqüência escolhida dentre hupA ou hupB.A process according to claim 1, characterized in that the HU coding gene is a DNA sequence that has at least 80% homology with at least one sequence chosen from hupA or hupB. 6. Processo, de acordo com a reivindicação 1, caracterizado pelo fato de que o cassete de recombinação compreende pelo menos uma seqüência capaz de silenciar pelo menos um gene codificador de HU em uma bactéria patogênica.Process according to claim 1, characterized in that the recombination cassette comprises at least one sequence capable of silencing at least one HU coding gene in a pathogenic bacterium. 7. Processo, de acordo com a reivindicação 6, caracterizado pelo fato de que o cassete de recombinação é composto por iniciadores.Process according to Claim 6, characterized in that the recombination cassette is composed of primers. 8. Processo, de acordo com a reivindicação 7, caracterizado pelo fato de que os referidos iniciadores possuem 2 (duas) partes contínuas, sendo a primeira uma seqüência de aproximadamente 40 bases homólogas ao gene alvo e a segunda aproximadamente 20 bases homólogas a uma região presente nos plasmídeos a serem utilizados.Process according to claim 7, characterized in that said primers have 2 (two) continuous parts, the first being a sequence of approximately 40 bases homologous to the target gene and the second approximately 20 bases homologous to a region. present on the plasmids to be used. 9. Processo, de acordo com a reivindicação 8, caracterizado pelo fato de que as regiões de homologia com o gene codificador de HU foram selecionadas a partir da seqüência do banco de dados do projeto Genoma S. enterica (NC_003197) e escolhidas de modo que fossem próximas aos códons de iniciação e terminação do gene.Process according to claim 8, characterized in that the regions of homology to the HU coding gene were selected from the sequence of the Genome S. enterica project database (NC_003197) and chosen so that were close to the gene initiation and termination codons. 10. Processo, de acordo com a reivindicação 1, caracterizado pelo fato de que para a geração do cassete de recombinação, seqüências de aproximadamente 40 pb homólogas ao gene alvo são geradas nas extremidades desse módulo por PCR.Process according to claim 1, characterized in that for the generation of the recombination cassette, sequences of approximately 40 bp homologous to the target gene are generated at the ends of that module by PCR. 11. Processo, de acordo com a reivindicação 1, caracterizado pelo fato de que o cassete de recombinação é o módulo flanqueado por seqüências homólogas ao gene alvo.Process according to Claim 1, characterized in that the recombination cassette is the module flanked by sequences homologous to the target gene. 12. Processo, de acordo com a reivindicação 1, caracterizado pelo fato de que os referidos genes acessórios podem ser genes de resistência a antibióticos.Process according to claim 1, characterized in that said accessory genes may be antibiotic resistance genes. 13. Processo, de acordo com a reivindicação 1, caracterizado pelo fato de que os antibióticos são selecionados dos grupos compreendidos por ampicilina, canamicina, cloramphenicol, estreptomicina e tetraciclina.Process according to Claim 1, characterized in that the antibiotics are selected from the groups comprised of ampicillin, kanamycin, chloramphenicol, streptomycin and tetracycline. 14. Processo, de acordo com a reivindicação 1, caracterizado pelo fato de que para a geração de mutantes, o plasmídeo pKD46 é transformado por eletroporação na linhagem hospedeira e os transformantes são submetidos à eletroporação com o cassete de recombinação.Process according to Claim 1, characterized in that for mutant generation, plasmid pKD46 is transformed by electroporation into the host lineage and the transformants are electroporation with the recombination cassette. 15. Processo, de acordo com a reivindicação 1, caracterizado pelo fato de que a expressão dos genes γ, β e exo inibe a degradação da fita linear de DNA, permitindo a recombinação do cassete por recombinação homóloga.Process according to claim 1, characterized in that the expression of the γ, β and exo genes inhibits the degradation of the linear strand of DNA, allowing the recombination of the cassette by homologous recombination. 16. Processo, de acordo com a reivindicação 1, caracterizado pelo fato de que os recombinantes são selecionados utilizando-se as marcas de resistências carreadas pelo módulo de recombinação.Process according to claim 1, characterized in that the recombinants are selected using the resistance marks carried by the recombination module. 17. Processo, de acordo com a reivindicação 16, caracterizado pelo fato de que a remoção do cassete de resistência é feito por uma enzima.Process according to Claim 16, characterized in that the resistance cassette is removed by an enzyme. 18. Processo, de acordo com a reivindicação 17, caracterizado pelo fato de que a referida enzima é preferencialmente a FLP recombinase.Process according to claim 17, characterized in that said enzyme is preferably FLP recombinase. 19. Processo, de acordo com a reivindicação 17 ou 18, caracterizado pelo fato de que a referida recombinase é expressa por um gene plasmidial.Process according to claim 17 or 18, characterized in that said recombinase is expressed by a plasmid gene. 20. Processo, de acordo com a reivindicação 1, caracterizado pelo fato de que a transformação das linhagens selecionadas com o plasmídeo foi realizada por eletroporação.Process according to claim 1, characterized in that the transformation of the selected strains with the plasmid was performed by electroporation. 21. Processo, de acordo com a reivindicação 1, caracterizado pelo fato de que gera uma linhagem duplo mutante.Process according to claim 1, characterized in that it generates a double mutant lineage. 22. Processo, de acordo com a reivindicação 21, caracterizado pelo fato de que a referida linhagem duplo mutante e constituída por 662STAhupAAhupB.Process according to claim 21, characterized in that said double mutant lineage is comprised of 662STAhupAAhupB. 23. Processo, de acordo com a reivindicação 1 a 21, caracterizado pelo fato de que ainda apresenta uma menor probabilidade de reversão total da atenuação.Process according to Claims 1 to 21, characterized in that it still has a lower probability of total reversal of attenuation. 24. Processo, de acordo com a reivindicação 1, caracterizado pelo fato de que o iniciador é composto por uma seqüência homóloga a um gene codificador de HU.Process according to claim 1, characterized in that the primer is composed of a sequence homologous to an HU coding gene. 25. Vetor vacinai caracterizado pelo fato de que o possui pelo menos um gene codificador de HU nocauteado e é capaz de estimular uma resposta imune contra uma infecção por uma bactéria patogênica.25. Vaccine vector characterized in that it has at least one knockout HU coding gene and is capable of stimulating an immune response against infection by a pathogenic bacterium. 26. Vetor vacinai, de acordo com a reivindicação 26, caracterizado pelo fato da resposta imune ser humoral e/ou celular.Vaccine vector according to claim 26, characterized in that the immune response is humoral and / or cellular. 27. Vetor vacinai, de acordo com a reivindicação 25, caracterizado pelo fato de que carrega antígenos, constituindo de linhagens vacinais multifatoriais.Vaccine vector according to claim 25, characterized in that it carries antigens consisting of multifactorial vaccine strains. 28. Vacina conforme definida pelas reivindicações 1 a 27 caracterizada pelo fato de que compreender uma linhagem atenuada mutante de uma bactéria patogênica, onde a atenuação corresponde à deleção de um ou ambos os genes codificadores de HU.Vaccine as defined in claims 1 to 27, characterized in that it comprises a mutated attenuated strain of a pathogenic bacterium, where the attenuation corresponds to the deletion of one or both of the HU coding genes. 29. Vacina, de acordo com a reivindicação 28, caracterizada pelo fato de que a bactéria patogênica é selecionada do grupo que compreende Enterobacteriaceae, Vibrionaceae, Francisellaceae, Legionallales, Pseudomonadaeea, Pasteurellaeeae e combinações dos mesmos.Vaccine according to claim 28, characterized in that the pathogenic bacterium is selected from the group comprising Enterobacteriaceae, Vibrionaceae, Francisellaceae, Legionallales, Pseudomonadaeea, Pasteurellaeeae and combinations thereof. 30. Vacina, de acordo com as reivindicações 28 e 29, caracterizada pelo fato de que a bactéria patogênica é selecionada dentre Salmonella spp., Shigella spp., Eseheriehia spp., Yersinia spp., Vibrio spp e combinações das mesmas.Vaccine according to claims 28 and 29, characterized in that the pathogenic bacterium is selected from Salmonella spp., Shigella spp., Eseheriehia spp., Yersinia spp., Vibrio spp and combinations thereof. 31. Vacina, de acordo com a reivindicação 30, caracterizada pelo fato de que a bactéria patogênica é preferencialmente S. enteriea, sorovar Typhimurium (662ST).Vaccine according to claim 30, characterized in that the pathogenic bacterium is preferably S. enteriea, serovar Typhimurium (662ST). 32. Vacina, de acordo com a reivindicação 28, caracterizada pelo fato de que o gene codificador de HU é uma seqüência genômica que apresente homologia de pelo menos 80% com pelo menos uma seqüência escolhida dentre hupA ou hupB.Vaccine according to claim 28, characterized in that the HU coding gene is a genomic sequence which has at least 80% homology with at least one sequence chosen from hupA or hupB. 33. Uso da vacina conforme definido pelas reivindicações 28 a 32 caracterizado pelo fato de que é para induzir proteção contra doenças bacterianas.Use of the vaccine as defined by claims 28 to 32 characterized in that it is to induce protection against bacterial diseases. 34. Uso, de acordo com a reivindicação 33, caracterizado pelo fato de que a referida doença bacteriana é preferencialmente salmonelose.Use according to claim 33, characterized in that said bacterial disease is preferably salmonellosis. 35. Uso da vacina conforme definido pelas reivindicações 28 a 32 caracterizado pelo fato de ser como um potencial uso como vetor vacinai multifatorial expressando antígenos de outras doenças.Use of the vaccine as defined by claims 28 to 32, characterized in that it is a potential use as a multifactorial vaccine vector expressing antigens from other diseases. 36. Processo, de acordo com a reivindicação 1, caracterizado pelo fato de que o duplo mutante AhupAAhupB com os primers hupBDT compreende a SEQ ID No. 1A method according to claim 1, characterized in that the double mutant AhupAAhupB with the hupBDT primers comprises SEQ ID No. 1. 37. Processo, de acordo com a reivindicação 1, caracterizado pelo fato de que o duplo mutante AhupAAhupB sequenciado com primer hupADT2f compreende a SEQ ID No. 2.A process according to claim 1, characterized in that the hupADT2f primer-sequenced double mutant AhupAAhupB comprises SEQ ID No. 2. 38. Processo, de acordo com a reivindicação 1, caracterizado pelo fato de que o duplo mutante AhupAAhupB sequenciado com o primer hupADT2r compreende a SEQ ID No. 3 .Process according to claim 1, characterized in that the double mutant AhupAAhupB sequenced with the hupADT2r primer comprises SEQ ID No. 3. 39. Processo, de acordo com a reivindicação 1, caracterizado pelo fato de que a seqüência dos iniciadores externos aos genes hupA e hupB compreende as SEQ ID Nos 4, 5, 6, 7, 8 e 9.A method according to claim 1, characterized in that the sequence of primers external to the hupA and hupB genes comprises SEQ ID Nos. 4, 5, 6, 7, 8 and 9.
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