EP2786762A2 - Dianticorps covalents et leurs utilisations - Google Patents

Dianticorps covalents et leurs utilisations Download PDF

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Publication number
EP2786762A2
EP2786762A2 EP14161122.8A EP14161122A EP2786762A2 EP 2786762 A2 EP2786762 A2 EP 2786762A2 EP 14161122 A EP14161122 A EP 14161122A EP 2786762 A2 EP2786762 A2 EP 2786762A2
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EP
European Patent Office
Prior art keywords
domain
binding
polypeptide
epitope
diabody
Prior art date
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EP14161122.8A
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German (de)
English (en)
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EP2786762A3 (fr
EP2786762B1 (fr
Inventor
Leslie S. Johnson
Ling Huang
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Macrogenics Inc
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Macrogenics Inc
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Priority to SI200931959T priority Critical patent/SI2786762T1/sl
Priority to PL14161122T priority patent/PL2786762T3/pl
Publication of EP2786762A2 publication Critical patent/EP2786762A2/fr
Publication of EP2786762A3 publication Critical patent/EP2786762A3/fr
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Publication of EP2786762B1 publication Critical patent/EP2786762B1/fr
Priority to HRP20190740TT priority patent/HRP20190740T1/hr
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Definitions

  • prophylactic agent and “prophylactic agents” refer to any agent(s) which can be used in the prevention of a disorder, or prevention of recurrence or spread of a disorder.
  • a prophylactically effective amount may refer to the amount of prophylactic agent sufficient to prevent the recurrence or spread of hyperproliferative disease, particularly cancer, or the occurrence of such in a patient, including but not limited to those predisposed to hyperproliferative disease, for example those genetically predisposed to cancer or previously exposed to carcinogens.
  • a prophylactically effective amount may also refer to the amount of the prophylactic agent that provides a prophylactic benefit in the prevention of disease.
  • a prophylactically effective amount with respect to a prophylactic agent of the invention means that amount of prophylactic agent alone, or in combination with other agents, that provides a prophylactic benefit in the prevention of disease.
  • the term "specifically binds an immune complex" and analogous terms refer to molecules that specifically bind to an immune complex and do not specifically bind to another molecule.
  • a molecule that specifically binds to an immune complex may bind to other peptides or polypeptides with lower affinity as determined by, e.g. , immunoassays, BIAcore, or other assays known in the art.
  • molecules that specifically bind an immune complex do not cross-react with other proteins.
  • Molecules that specifically bind an immune complex can be identified, for example, by immunoassays, BIAcore, or other techniques known to those of skill in the art.
  • a polypeptide chain of the invention comprises a hinge domain, which hinge domain is at the C-terminus of the polypeptide chain, wherein said polypeptide chain does not comprise an Fc domain.
  • a polypeptide chain of the invention comprises a hinge-Fc domain, which hinge-Fc domain is at the C-terminus of the polypeptide chain.
  • a polypeptide chain of the invention comprises a hinge-Fc domain, which hinge-Fc domain is at the N-terminus of the polypeptide chain.
  • molecules of the invention are engineered to comprise an altered glycosylation pattern or an altered glycoform relative to the comparable portion of the template molecule.
  • Engineered glycoforms may be useful for a variety of purposes, including, but not limited to, enhancing effector function.
  • Engineered glycoforms may be generated by any method known to one skilled in the art, for example by using engineered or variant expression strains, by co-expression with one or more enzymes, for example, DI N-acetylglucosaminyltransferase III (GnTI11), by expressing a diabody of the invention in various organisms or cell lines from various organisms, or by modifying carbohydrate(s) after the diabody has been expressed and purified.
  • DI N-acetylglucosaminyltransferase III GnTI11
  • CD19 Troussard, X. et al. 1998 Hematol Cell Ther. 40(4):19-48
  • CD20 Thomas, D.A. et al. 2006 Hematol Oncol Clin North Am. 20(5):1125-36
  • CD22 Kreitman, R.J. 2006 AAPS J. 18;8(3):E532-51
  • CD23 Rosati, S. et al. 2005 Curr Top Microbiol Immunol. 5;294:91-107
  • CD25 Troussard, X. et al. 1998 Hematol Cell Ther. 40(4):139-48
  • CD27 Bataille, R.
  • coli Salmonella thyphimurium, Pseudomonas aeruginosa, Vibrio cholerae, Neisseria gonorrhoeae, Helicobacter pylori, Hemophilus influenzae, Shigella dysenteriae, Staphylococcus aureus, Mycobacterium tuberculosis and Streptococcus pneumoniae, fungal agents and parasites such as Giardi.
  • variable domains derived from human, chimeric or humanized antibodies are particularly desirable for therapeutic treatment of human subjects.
  • Human antibodies can be made by a variety of methods known in the art including phage display methods described above using antibody libraries derived from human immunoglobulin sequences. See also U.S. Patent Nos. 4,444,887 and 4,716,111 ; and International Publication Nos.
  • Libraries can be constructed consisting of a pool of variant clones each of which differs by a single amino acid alteration in a single CDR and which contain variants representing each possible amino acid substitution for each CDR residue.
  • Mutants with increased binding affinity for the antigen can be screened by contacting the immobilized mutants with labeled antigen. Any screening method known in the art can be used to identify mutant antibodies with increased avidity to the antigen (e.g ., ELISA) (See Wu et al. (1998) "Stepwise In Vitro Affinity Maturation Of Vitaxin, An Alphav Beta3-Specific Humanized mAb, " Proc Natl. Acad Sci. USA 95:6037-6042 ; Yelton et al.
  • the binding domain agonizes Fc ⁇ RIIB-mediated inhibition of Fc ⁇ RI signaling.
  • said binding domain inhibits Fc ⁇ RI-induced mast cell activation, calcium mobilization, degranulation, cytokine production, or serotonin release.
  • the binding domains of the invention stimulate phosphorylation of Fc ⁇ RIIB, stimulate recruitment of SHIP, stimulate SHIP phosphorylation and its association with Shc, or inhibit activation of MAP kinase family members ( e.g ., Erk1, Erk2, JNK, p38, etc.).
  • the binding domains are derived from humanized antibodies.
  • a humanized Fc ⁇ RIIB specific antibody may comprise substantially all of at least one, and typically two, variable domains in which all or substantially all of the CDR regions correspond to those of a non-human immunoglobulin ( i.e., donor antibody) and all or substantially all of the framework regions are those of a human immunoglobulin consensus sequence.
  • the framework regions of the humanized antibodies described herein does not necessarily consist of the precise amino acid sequence of the framework region of a natural occurring human antibody variable region, but contains various alterations, including but not limited to amino acid deletions, insertions, modifications that alter the property of the humanized antibody, for example, improve the binding properties of a humanized antibody region that is specific for the same target as the murine Fc ⁇ RIIB specific antibody.
  • a minimal number of alterations are made to the framework region in order to avoid large-scale introductions of non-human framework residues and to ensure minimal immunogenicity of the humanized antibody in humans.
  • the donor monoclonal antibody is preferably a monoclonal antibody produced by clones 2B6, 3H7, 1D5, 2E1, 2H9, 2D11, or 1F2.
  • the antibodies can be characterized using assays for identifying the function of the antibodies of the invention, particularly the activity to modulate Fc ⁇ RIIB signaling.
  • characterization assays of the invention can measure phosphorylation of tyrosine residues in the ITIM motif of Fc ⁇ RIIB, or measure the inhibition of B cell receptor-generated calcium mobilization.
  • the characterization assays of the invention can be cell-based or cell-free assays.
  • the anti-Fc ⁇ RIIB antibodies of the invention are characterized for their ability to modulate an IgE mediated response in a cell-based ⁇ -hexosaminidase (enzyme contained in the granules) release assay.
  • ⁇ -hexosaminidase release from mast cells and basophils is a primary event in acute allergic and inflammatory condition ( Aketani et al. (2001) "Correlation Between Cytosolic Calcium Concentration And Degranulation In RBL-2H3 Cells In The Presence Of Various Concentrations Of Antigen-Specific IgEs, " Immunol. Lett. 75: 185-189 ; Aketani et al.
  • Measuring Fc ⁇ RIIB-dependent activity can include, for example, measuring intracellular calcium mobilization by flow cytometry, measuring phosphorylation of Akt and/or Erk, measuring BCR-mediated accumulation of PI(3,4,5)P 3 , or measuring Fc ⁇ RIIB-mediated proliferation B cells.
  • CD16A binding proteins which can be used as sources for light and heavy chain variable regions for covalent diabody production.
  • CD16A binding proteins includes molecules comprising VL and VH domains of anti-CD16A antibodies, which VH and VL domains are used in the production of the diabodies of the present invention.
  • the sequences of a number of CD16A binding proteins VL domains is shown in Table 6 .
  • Light chains comprising these sequences fused to a human C ⁇ . constant domain were coexpressed with a Hu3G8VH heavy chain (described above) to form tetrameric antibodies, and the binding of the antibodies to CD16A was measured to assess the effect of amino acid substitutions compared to the Hu3G8VL-1 VL domain (SEQ ID NO: 71) .
  • said amino acid modification and IgG hinge/Fc region display similar functionality, e.g ., increased affinity for Fc ⁇ RIIA, when separately assayed for Fc ⁇ R binding or effector function in the context of the diabody molecule or other Fc-containing molecule ( e.g . and immunoglobulin).
  • the combination of said amino acid modification and selected IgG Fc region then act additively or, more preferably, synergistically to modify said functionality in the diabody molecule of the invention, relative to a diabody molecule of the invention comprising a wild-type Fc region.
  • FACS fluorescence activated cell sorting
  • Flow sorters are capable of rapidly examining a large number of individual cells that have been bound, e.g. , opsonized, by molecules of the invention (e.g. , 10-100 million cells per hour) (Shapiro et al. (1995) Practical Flow Cytometry ).
  • specific parameters used for optimization of diabody behavior include but are not limited to, antigen concentration (i.e.
  • the invention encompasses, effector cells, THP-1, expressing Fc ⁇ RI, Fc ⁇ RIIA and Fc ⁇ RIIB, and monocyte derived primary macrophages derived from whole human blood expressing both Fc ⁇ RIIIA and Fc ⁇ RIIB, to determine if heavy chain antibody mutants show increased ADCC activity and phagocytosis relative to wild type IgG2 antibodies.
  • the resulting binding curves are globally fitted using computer algorithms supplied by the SPR instrument manufacturer, e.g. , BIAcore, Inc. (Piscataway, NJ). These algorithms calculate both the K on and K off , from which the apparent equilibrium binding constant, K d is deduced as the ratio of the two rate constants ( i.e. , K off /K on ). More detailed treatments of how the individual rate constants are derived can be found in the BIAevaluaion Software Handbook (BIAcore, Inc., Piscataway, NJ). The analysis of the generated data may be done using any method known in the art.
  • the host cells used to express the molecules identified by the methods of the invention may be either bacterial cells such as Escherichia coli , or, preferably, eukaryotic cells, especially for the expression of whole recombinant immunoglobulin molecule.
  • mammalian cells such as Chinese hamster ovary cells (CHO)
  • CHO Chinese hamster ovary cells
  • a vector such as the major intermediate early gene promoter element from human cytomegalovirus is an effective expression system for immunoglobulins ( Foecking et al. (1986) "Powerful And Versatile Enhancer-Promoter Unit For Mammalian Expression Vectors, " Gene 45:101-106 ; Cockett et al. (1990) "High Level Expression Of Tissue Inhibitor Of Metalloproteinases In Chinese Hamster Ovary Cells Using Glutamine Synthetase Gene Amplification," Biotechnology 8:662-667 ).
  • yeast expression vectors containing sequences encoding the molecules identified by the methods of the invention
  • insect cell systems infected with recombinant virus expression vectors e.g. , baclovirus
  • plant cell systems infected with recombinant virus expression vectors e.g. , cauliflower mosaic virus (CaMV) and tobacco mosaic virus (TMV) or transformed with recombinant plasmid expression vectors ( e.g. , Ti plasmid) containing sequences encoding the molecules identified by the methods of the invention
  • mammalian cell systems e.g.
  • enterokinase which recognizes the amino acid sequence DDDDK ⁇ (SEQ ID NO: 91) ( Collins-Racie et al. (1995) "Production Of Recombinant Bovine Enterokinase Catalytic Subunit In Escherichia Coli Using The Novel Secretory Fusion Partner DsbA, " Biotechnology 13:982-987 hereby incorporated by reference herein in its entirety)
  • furin which recognizes the amino acid sequence RXXR ⁇ , with a preference for RX(K/R)R ⁇ (SEQ ID NO: 92 and SEQ ID NO: 93, respectively) (additional R at P6 position appears to enhance cleavage)
  • AcTEV which recognizes the amino acid sequence ENLYFQ ⁇ G (SEQ ID NO: 94) ( Parks et al.
  • Different host cells have characteristic and specific mechanisms for the post-translational processing and modification of proteins and gene products. Appropriate cell lines or host systems can be chosen to ensure the correct modification and processing of the foreign protein expressed.
  • eukaryotic host cells which possess the cellular machinery for proper processing of the primary transcript, glycosylation, and phosphorylation of the gene product may be used.
  • mammalian host cells include but are not limited to CHO, VERY, BHK, HeLa, COS, MDCK, 293, 293T, 3T3, WI38, BT483, Hs578T, HTB2, BT20 and T47D, CRL7030 and Hs578Bst.
  • antiviral agents include but are not limited to zidovudine, acyclovir, gangcyclovir, vidarabine, idoxuridine, trifluridine, and ribavirin, as well as foscarnet, amantadine, rimantadine, saquinavir, indinavir, amprenavir, lopinavir, ritonavir, the alpha-interferons; adefovir, clevadine, entecavir, pleconaril.
  • a composition of the invention comprises nucleic acids encoding a fusion protein, said nucleic acids being a part of an expression vector that expresses the fusion protein in a suitable host.
  • nucleic acids have promoters, preferably heterologous promoters, operably linked to the coding region of a fusion protein, said promoter being inducible or constitutive, and optionally, tissue-specific.
  • nucleic acid molecules are used in which the coding sequence of the fusion protein and any other desired sequences are flanked by regions that promote homologous recombination at a desired site in the genome, thus providing for intrachromosomal expression of the fusion protein.
  • the nucleic acid is introduced into a cell prior to administration in vivo of the resulting recombinant cell.
  • introduction can be carried out by any method known in the art, including but not limited to, transfection, electroporation, microinjection, infection with a viral or bacteriophage vector, containing the nucleic acid sequences, cell fusion, chromosome-mediated gene transfer, microcellmediated gene transfer, spheroplast fusion, etc .
  • Numerous techniques are known in the art for the introduction of foreign genes into cells (See, e.g., Loeffler et al. (1993) "Gene Transfer Into Primary And Established Mammalian Cell Lines With Lipopolyamine-Coated DNA, " Meth. Enzymol.
  • a monospecific covalent diabody and a bispecific covalent diabody were constructed to assess the recombinant production, purification and binding characteristics of each.
  • the affinity purified diabody molecules that were produced by the recombinant expression systems described herein were found by SDS-PAGE and SEC analysis to consist of a single dimerc species. ELISA and SPR analysis further revealed that the covalent bispecific diabody exhibited affinity for both target antigens and could bind both antigens simultaneously.
  • pMGX0666 and pMGX0668 encoding constructs 3 and 4, respectively, were separately transfected into HEK-293 cells for expression of a covalent monospecific diabody (CMD), immunospecific for Fc ⁇ RIIIA (h3G8 diabody) and Fc ⁇ RIIB (h2B6 diabody), respectively. Following three days in culture, secreted products were purified from the conditioned media.
  • CMD monospecific diabody
  • Fc ⁇ RIIIA h3G8 diabody
  • Fc ⁇ RIIB h2B6 diabody
  • Co-transfection of these plasmids was designed to lead to the expression of a bispecific diabody (CBD) of tetravalency with IgG-like structure, immunospecific for both Fc ⁇ RIIB and Fc ⁇ RIIIA.
  • CBD bispecific diabody
  • An additional cotransfection was also performed: pMGX0674 and pMGX0676, encoding constructs 6 and 5, respectively.
  • conditioned media was harvested.
  • the amount of secreted product in the conditioned media was quantitiated by anti IgG Fc ELISA using purified Fc as a standard.
  • the concentrations of product in the samples was then normalized based on the quantitation, and the normalized samples used for the remaining assays.
  • Nucleic acid expression vectors were designed to produce modified versions of constructs 5, 6 and 8 presented in Example 6.2.
  • Construct 9 (SEQ ID NO: 19) and construct 10 (SEQ ID NO: 20) (both shown schematically in FIG. 13 ) were analogous to constructs 8 and 6, with the exception that Fc domain or hinge-Fc domain, respectively, was shifted from the C-terminus of the polypeptide to the N-terminus. Additionally all Fc domains used were wild-type IgG1 Fc domains.
  • Construct 11 SEQ ID NO: 21 , (shown schematically in FIG.
  • the construct was re-amplified by using H9 and lgh646R as primers.
  • the C-terminal LGGC linker was integrated in 1gh646R primer.
  • the PCR product was then digested with Nhei/EcoRI restriction endonucleases, and cloned into pCIneo vector.
  • CB3.1VL-8B5VH-LGGC The same strategy was used to create CB3.1VL-8B5VH-LGGC.
  • the C-terminal LGGC linker was integrated in lgh648R primer and CB3.1 VL-8B5VH-FNRGEC was used as temperate.
  • the PCR product was then digested with NheI/EcoRI restriction endonucleases, and cloned into pCIneo vector.
  • HBCRCVL R45N-h8B5VH_LGGCGGGS-hG1 The hBCRCVL sequences are fused to the H8B5VH sequences by the linker GGGSGGGG (SEQ ID NO: 10) located at position 113-120.
  • the H8B5VH sequences are fused to the Fc sequences by the linker LGGCGGGS (SEQ ID NO: 267) located at position 237-244 (both shown underlined above).
  • separators of any amino acid sequence may be employed, it is preferable to employ separators that form an ⁇ helix coils, so as to maximally extend and project the Fc domain away from the variable domains ( Figure 37 ). Because the above-described coiled polypeptides of opposing charge additionally finction to promote heterodimer formation, such molecules are particularly preferred separators. Such coil-containing Fc-DART molecules provide benefits similar to those of Fc-DARTS, including improved serum half-life and effector function recruitment. The above-described E-coil and K-coil polypeptides are particularly preferred for this purpose.
  • the DART has the ability to bind to HER2-expressing cells and to thereby attach to such cells a domain capable of binding to the T-cell receptor.
  • T cells bind to this domain, they activate to initiate an immune response that leads to the killing of the HER2-expressing cells.

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US11685781B2 (en) 2018-02-15 2023-06-27 Macrogenics, Inc. Variant CD3-binding domains and their use in combination therapies for the treatment of disease
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