FR3096373B1 - Outil genetique optimisé pour modifier les bacteries - Google Patents

Outil genetique optimisé pour modifier les bacteries Download PDF

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Publication number
FR3096373B1
FR3096373B1 FR1905485A FR1905485A FR3096373B1 FR 3096373 B1 FR3096373 B1 FR 3096373B1 FR 1905485 A FR1905485 A FR 1905485A FR 1905485 A FR1905485 A FR 1905485A FR 3096373 B1 FR3096373 B1 FR 3096373B1
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Prior art keywords
bacteria
sequence
bacterium
genetic
relates
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FR1905485A
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FR3096373A1 (fr
Inventor
Ferreira Nicolas Lopes
Rémi Hocq
François WASELS
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IFP Energies Nouvelles IFPEN
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IFP Energies Nouvelles IFPEN
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Priority to FR1905485A priority Critical patent/FR3096373B1/fr
Application filed by IFP Energies Nouvelles IFPEN filed Critical IFP Energies Nouvelles IFPEN
Priority to US17/611,962 priority patent/US12473527B2/en
Priority to PCT/FR2020/050853 priority patent/WO2020240122A1/fr
Priority to CN202080038706.0A priority patent/CN114286857B/zh
Priority to CA3141382A priority patent/CA3141382A1/fr
Priority to EP20740061.5A priority patent/EP3976780A1/fr
Priority to JP2021569371A priority patent/JP7661241B2/ja
Priority to KR1020217042108A priority patent/KR102956722B1/ko
Priority to BR112021023648A priority patent/BR112021023648A2/pt
Publication of FR3096373A1 publication Critical patent/FR3096373A1/fr
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Publication of FR3096373B1 publication Critical patent/FR3096373B1/fr
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    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N1/00—Microorganisms; Compositions thereof; Processes of propagating, maintaining or preserving microorganisms or compositions thereof; Processes of preparing or isolating a composition containing a microorganism; Culture media therefor
    • C12N1/20—Bacteria; Culture media therefor
    • C12N1/205—Bacterial isolates
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/102—Mutagenizing nucleic acids
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/11—DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
    • C12N15/111—General methods applicable to biologically active non-coding nucleic acids
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/11—DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
    • C12N15/113—Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides; Antisense DNA or RNA; Triplex- forming oligonucleotides; Catalytic nucleic acids, e.g. ribozymes; Nucleic acids used in co-suppression or gene silencing
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/74—Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/87—Introduction of foreign genetic material using processes not otherwise provided for, e.g. co-transformation
    • C12N15/90—Stable introduction of foreign DNA into chromosome
    • C12N15/902—Stable introduction of foreign DNA into chromosome using homologous recombination
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00—Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/14—Hydrolases (3)
    • C12N9/16—Hydrolases (3) acting on ester bonds (3.1)
    • C12N9/22—Ribonucleases [RNase]; Deoxyribonucleases [DNase]
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N2310/00—Structure or type of the nucleic acid
    • C12N2310/10—Type of nucleic acid
    • C12N2310/20—Type of nucleic acid involving clustered regularly interspaced short palindromic repeats [CRISPR]
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12R—INDEXING SCHEME ASSOCIATED WITH SUBCLASSES C12C - C12Q, RELATING TO MICROORGANISMS
    • C12R2001/00—Microorganisms ; Processes using microorganisms
    • C12R2001/01—Bacteria or Actinomycetales ; using bacteria or Actinomycetales
    • C12R2001/145—Clostridium
    • Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y02—TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
    • Y02E—REDUCTION OF GREENHOUSE GAS [GHG] EMISSIONS, RELATED TO ENERGY GENERATION, TRANSMISSION OR DISTRIBUTION
    • Y02E50/00—Technologies for the production of fuel of non-fossil origin
    • Y02E50/10—Biofuels, e.g. bio-diesel

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  • Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Engineering & Computer Science (AREA)
  • Chemical & Material Sciences (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Organic Chemistry (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Biomedical Technology (AREA)
  • Biotechnology (AREA)
  • General Engineering & Computer Science (AREA)
  • Molecular Biology (AREA)
  • Biochemistry (AREA)
  • Microbiology (AREA)
  • General Health & Medical Sciences (AREA)
  • Biophysics (AREA)
  • Physics & Mathematics (AREA)
  • Plant Pathology (AREA)
  • Medicinal Chemistry (AREA)
  • Crystallography & Structural Chemistry (AREA)
  • Tropical Medicine & Parasitology (AREA)
  • Virology (AREA)
  • Mycology (AREA)
  • Micro-Organisms Or Cultivation Processes Thereof (AREA)
  • Preparation Of Compounds By Using Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
  • Enzymes And Modification Thereof (AREA)

Abstract

OUTIL GENETIQUE OPTIMISÉ POUR MODIFIER LES BACTERIES La présente invention concerne la transformation et la modification génétique de bactéries appartenant au phylum des Firmicutes. Elle concerne ainsi des méthodes, outils et kits permettant une telle modification génétique, impliquant en particulier une séquence d’acide nucléique utilisée pour faciliter la transformation de la bactérie, ladite séquence comprenant i) tout ou partie de la séquence SEQ ID NO : 126 et ii) une séquence permettant la modification du matériel génétique d’une bactérie et/ou l’expression au sein de ladite bactérie d’une séquence d’ADN partiellement ou totalement absente du matériel génétique présent au sein de la version sauvage de ladite bactérie. La description vise aussi les bactéries génétiquement modifiées obtenues et leurs utilisations, en particulier pour produire un solvant, de préférence à l’échelle industrielle.
FR1905485A 2019-05-24 2019-05-24 Outil genetique optimisé pour modifier les bacteries Active FR3096373B1 (fr)

Priority Applications (9)

Application Number Priority Date Filing Date Title
FR1905485A FR3096373B1 (fr) 2019-05-24 2019-05-24 Outil genetique optimisé pour modifier les bacteries
PCT/FR2020/050853 WO2020240122A1 (fr) 2019-05-24 2020-05-22 Outil genetique optimisé pour modifier les bacteries
CN202080038706.0A CN114286857B (zh) 2019-05-24 2020-05-22 用于修饰细菌的优化的遗传工具
CA3141382A CA3141382A1 (fr) 2019-05-24 2020-05-22 Outil genetique optimise pour modifier les bacteries
US17/611,962 US12473527B2 (en) 2019-05-24 2020-05-22 Optimized genetic tool for modifying bacteria
EP20740061.5A EP3976780A1 (fr) 2019-05-24 2020-05-22 Outil genetique optimisé pour modifier les bacteries
JP2021569371A JP7661241B2 (ja) 2019-05-24 2020-05-22 細菌を改変するための最適化された遺伝子ツール
KR1020217042108A KR102956722B1 (ko) 2019-05-24 2020-05-22 박테리아의 변형을 위해 최적화된 유전자 도구
BR112021023648A BR112021023648A2 (pt) 2019-05-24 2020-05-22 Ferramenta genética otimizada para modificar as bactérias

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
FR1905485A FR3096373B1 (fr) 2019-05-24 2019-05-24 Outil genetique optimisé pour modifier les bacteries
FR1905485 2019-05-24

Publications (2)

Publication Number Publication Date
FR3096373A1 FR3096373A1 (fr) 2020-11-27
FR3096373B1 true FR3096373B1 (fr) 2024-09-13

Family

ID=69157897

Family Applications (1)

Application Number Title Priority Date Filing Date
FR1905485A Active FR3096373B1 (fr) 2019-05-24 2019-05-24 Outil genetique optimisé pour modifier les bacteries

Country Status (8)

Country Link
US (1) US12473527B2 (fr)
EP (1) EP3976780A1 (fr)
JP (1) JP7661241B2 (fr)
CN (1) CN114286857B (fr)
BR (1) BR112021023648A2 (fr)
CA (1) CA3141382A1 (fr)
FR (1) FR3096373B1 (fr)
WO (1) WO2020240122A1 (fr)

Families Citing this family (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
FR3147287A1 (fr) * 2023-03-31 2024-10-04 IFP Energies Nouvelles Bacteries clostridium modifiees produisant du propan-2-ol, preparation et utilisations de celles-ci
FR3147288A1 (fr) 2023-03-31 2024-10-04 IFP Energies Nouvelles Bacteries clostridium modifiees, outil d’edition genetique du plasmide psol de bacteries clostridium, et utilisations

Family Cites Families (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
GB201406968D0 (en) * 2014-04-17 2014-06-04 Green Biologics Ltd Deletion mutants
MX391661B (es) 2015-10-13 2025-03-21 Lanzatech Nz Inc Bacteria diseñada por ingeniería genética que comprende una trayectoria de fermentación que genera energía
FR3042506B1 (fr) * 2015-10-16 2018-11-30 IFP Energies Nouvelles Outil genetique de transformation de bacteries clostridium
CA3099316A1 (fr) * 2018-05-04 2019-11-07 Locus Biosciences, Inc. Procedes et compositions pour detruire une bacterie cible
FR3081881B1 (fr) * 2018-06-04 2024-05-24 Ifp Energies Now Outil genetique optimise pour modifier les bacteries du genre clostridium
FR3090691B1 (fr) 2018-12-20 2023-06-09 Ifp Energies Now Bacteries clostridium genetiquement modifiees, preparation et utilisations de celles-ci

Also Published As

Publication number Publication date
US12473527B2 (en) 2025-11-18
FR3096373A1 (fr) 2020-11-27
WO2020240122A1 (fr) 2020-12-03
CA3141382A1 (fr) 2020-12-03
EP3976780A1 (fr) 2022-04-06
BR112021023648A2 (pt) 2022-01-04
US20220243170A1 (en) 2022-08-04
JP7661241B2 (ja) 2025-04-14
KR20220012324A (ko) 2022-02-03
CN114286857A (zh) 2022-04-05
CN114286857B (zh) 2024-12-10
JP2022534223A (ja) 2022-07-28

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