JP2000500158A - ユニバーサルな固体支持体およびその使用方法 - Google Patents
ユニバーサルな固体支持体およびその使用方法Info
- Publication number
- JP2000500158A JP2000500158A JP9538250A JP53825097A JP2000500158A JP 2000500158 A JP2000500158 A JP 2000500158A JP 9538250 A JP9538250 A JP 9538250A JP 53825097 A JP53825097 A JP 53825097A JP 2000500158 A JP2000500158 A JP 2000500158A
- Authority
- JP
- Japan
- Prior art keywords
- group
- oligonucleotide
- solid support
- reagent
- cleavage
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Pending
Links
- 239000007787 solid Substances 0.000 title claims abstract description 155
- 238000000034 method Methods 0.000 title claims abstract description 55
- 108091034117 Oligonucleotide Proteins 0.000 claims abstract description 112
- 239000003153 chemical reaction reagent Substances 0.000 claims abstract description 103
- 238000003776 cleavage reaction Methods 0.000 claims abstract description 85
- 230000007017 scission Effects 0.000 claims abstract description 78
- BAVYZALUXZFZLV-UHFFFAOYSA-N Methylamine Chemical compound NC BAVYZALUXZFZLV-UHFFFAOYSA-N 0.000 claims abstract description 69
- GETQZCLCWQTVFV-UHFFFAOYSA-N trimethylamine Chemical compound CN(C)C GETQZCLCWQTVFV-UHFFFAOYSA-N 0.000 claims abstract description 56
- 238000002515 oligonucleotide synthesis Methods 0.000 claims abstract description 49
- 125000006239 protecting group Chemical group 0.000 claims abstract description 16
- 125000004122 cyclic group Chemical group 0.000 claims abstract description 15
- 230000000903 blocking effect Effects 0.000 claims abstract description 11
- 229910052717 sulfur Inorganic materials 0.000 claims abstract description 11
- 229910052739 hydrogen Inorganic materials 0.000 claims abstract description 10
- 239000001257 hydrogen Substances 0.000 claims abstract description 9
- VHUUQVKOLVNVRT-UHFFFAOYSA-N Ammonium hydroxide Chemical compound [NH4+].[OH-] VHUUQVKOLVNVRT-UHFFFAOYSA-N 0.000 claims abstract description 8
- 229910052760 oxygen Inorganic materials 0.000 claims abstract description 8
- 239000000908 ammonium hydroxide Substances 0.000 claims abstract description 7
- 125000006245 phosphate protecting group Chemical group 0.000 claims abstract description 7
- 125000000217 alkyl group Chemical group 0.000 claims abstract description 5
- 125000004435 hydrogen atom Chemical group [H]* 0.000 claims abstract 2
- -1 dimethoxytrityl Chemical group 0.000 claims description 41
- 239000000203 mixture Substances 0.000 claims description 27
- ZMANZCXQSJIPKH-UHFFFAOYSA-N Triethylamine Chemical compound CCN(CC)CC ZMANZCXQSJIPKH-UHFFFAOYSA-N 0.000 claims description 24
- 150000008300 phosphoramidites Chemical class 0.000 claims description 15
- 150000001875 compounds Chemical class 0.000 claims description 14
- 239000002773 nucleotide Substances 0.000 claims description 14
- 125000003729 nucleotide group Chemical group 0.000 claims description 13
- JGFZNNIVVJXRND-UHFFFAOYSA-N N,N-Diisopropylethylamine (DIPEA) Chemical compound CCN(C(C)C)C(C)C JGFZNNIVVJXRND-UHFFFAOYSA-N 0.000 claims description 12
- UAOMVDZJSHZZME-UHFFFAOYSA-N diisopropylamine Chemical compound CC(C)NC(C)C UAOMVDZJSHZZME-UHFFFAOYSA-N 0.000 claims description 12
- 150000002148 esters Chemical group 0.000 claims description 11
- 150000003512 tertiary amines Chemical class 0.000 claims description 11
- 125000004448 alkyl carbonyl group Chemical group 0.000 claims description 9
- 125000005129 aryl carbonyl group Chemical group 0.000 claims description 9
- 150000003335 secondary amines Chemical class 0.000 claims description 7
- CZPWVGJYEJSRLH-UHFFFAOYSA-N Pyrimidine Chemical group C1=CN=CN=C1 CZPWVGJYEJSRLH-UHFFFAOYSA-N 0.000 claims description 6
- 239000011521 glass Substances 0.000 claims description 6
- KWGKDLIKAYFUFQ-UHFFFAOYSA-M lithium chloride Chemical compound [Li+].[Cl-] KWGKDLIKAYFUFQ-UHFFFAOYSA-M 0.000 claims description 6
- KDCGOANMDULRCW-UHFFFAOYSA-N Purine Natural products N1=CNC2=NC=NC2=C1 KDCGOANMDULRCW-UHFFFAOYSA-N 0.000 claims description 5
- 125000002777 acetyl group Chemical group [H]C([H])([H])C(*)=O 0.000 claims description 5
- 150000001412 amines Chemical class 0.000 claims description 5
- 230000008878 coupling Effects 0.000 claims description 5
- 238000010168 coupling process Methods 0.000 claims description 5
- 238000005859 coupling reaction Methods 0.000 claims description 5
- AVFZOVWCLRSYKC-UHFFFAOYSA-N 1-methylpyrrolidine Chemical compound CN1CCCC1 AVFZOVWCLRSYKC-UHFFFAOYSA-N 0.000 claims description 4
- ROSDSFDQCJNGOL-UHFFFAOYSA-N Dimethylamine Chemical compound CNC ROSDSFDQCJNGOL-UHFFFAOYSA-N 0.000 claims description 4
- AHVYPIQETPWLSZ-UHFFFAOYSA-N N-methyl-pyrrolidine Natural products CN1CC=CC1 AHVYPIQETPWLSZ-UHFFFAOYSA-N 0.000 claims description 4
- OAICVXFJPJFONN-UHFFFAOYSA-N Phosphorus Chemical group [P] OAICVXFJPJFONN-UHFFFAOYSA-N 0.000 claims description 4
- 229940043279 diisopropylamine Drugs 0.000 claims description 4
- 150000002431 hydrogen Chemical group 0.000 claims description 4
- PTMHPRAIXMAOOB-UHFFFAOYSA-N phosphoramidic acid Chemical group NP(O)(O)=O PTMHPRAIXMAOOB-UHFFFAOYSA-N 0.000 claims description 4
- 239000004793 Polystyrene Substances 0.000 claims description 3
- HPNMFZURTQLUMO-UHFFFAOYSA-N diethylamine Chemical compound CCNCC HPNMFZURTQLUMO-UHFFFAOYSA-N 0.000 claims description 3
- 125000002467 phosphate group Chemical group [H]OP(=O)(O[H])O[*] 0.000 claims description 3
- 229920002223 polystyrene Polymers 0.000 claims description 3
- 125000000561 purinyl group Chemical group N1=C(N=C2N=CNC2=C1)* 0.000 claims description 3
- 230000002194 synthesizing effect Effects 0.000 claims description 3
- 125000002223 uridyl group Chemical group 0.000 claims description 3
- 125000003236 benzoyl group Chemical group [H]C1=C([H])C([H])=C(C([H])=C1[H])C(*)=O 0.000 claims description 2
- 239000000178 monomer Substances 0.000 claims description 2
- VGGSQFUCUMXWEO-UHFFFAOYSA-N Ethene Chemical compound C=C VGGSQFUCUMXWEO-UHFFFAOYSA-N 0.000 claims 4
- 239000005977 Ethylene Substances 0.000 claims 4
- 229920001577 copolymer Polymers 0.000 claims 4
- 125000004356 hydroxy functional group Chemical group O* 0.000 claims 3
- NIXOWILDQLNWCW-UHFFFAOYSA-M Acrylate Chemical compound [O-]C(=O)C=C NIXOWILDQLNWCW-UHFFFAOYSA-M 0.000 claims 2
- CERQOIWHTDAKMF-UHFFFAOYSA-M Methacrylate Chemical compound CC(=C)C([O-])=O CERQOIWHTDAKMF-UHFFFAOYSA-M 0.000 claims 2
- 239000004677 Nylon Substances 0.000 claims 2
- 229920001778 nylon Polymers 0.000 claims 2
- 239000011148 porous material Substances 0.000 claims 2
- 125000003088 (fluoren-9-ylmethoxy)carbonyl group Chemical group 0.000 claims 1
- KXDHJXZQYSOELW-UHFFFAOYSA-N Carbamic acid Chemical group NC(O)=O KXDHJXZQYSOELW-UHFFFAOYSA-N 0.000 claims 1
- 239000004743 Polypropylene Substances 0.000 claims 1
- 125000005233 alkylalcohol group Chemical group 0.000 claims 1
- 125000000250 methylamino group Chemical group [H]N(*)C([H])([H])[H] 0.000 claims 1
- 229920001155 polypropylene Polymers 0.000 claims 1
- JLCPHMBAVCMARE-UHFFFAOYSA-N [3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methyl [5-(6-aminopurin-9-yl)-2-(hydroxymethyl)oxolan-3-yl] hydrogen phosphate Polymers Cc1cn(C2CC(OP(O)(=O)OCC3OC(CC3OP(O)(=O)OCC3OC(CC3O)n3cnc4c3nc(N)[nH]c4=O)n3cnc4c3nc(N)[nH]c4=O)C(COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3CO)n3cnc4c(N)ncnc34)n3ccc(N)nc3=O)n3cnc4c(N)ncnc34)n3ccc(N)nc3=O)n3ccc(N)nc3=O)n3ccc(N)nc3=O)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cc(C)c(=O)[nH]c3=O)n3cc(C)c(=O)[nH]c3=O)n3ccc(N)nc3=O)n3cc(C)c(=O)[nH]c3=O)n3cnc4c3nc(N)[nH]c4=O)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)O2)c(=O)[nH]c1=O JLCPHMBAVCMARE-UHFFFAOYSA-N 0.000 abstract description 38
- 125000002887 hydroxy group Chemical group [H]O* 0.000 abstract description 24
- 230000008569 process Effects 0.000 abstract description 11
- UFHFLCQGNIYNRP-UHFFFAOYSA-N Hydrogen Chemical compound [H][H] UFHFLCQGNIYNRP-UHFFFAOYSA-N 0.000 abstract description 3
- JUJWROOIHBZHMG-UHFFFAOYSA-N Pyridine Chemical compound C1=CC=NC=C1 JUJWROOIHBZHMG-UHFFFAOYSA-N 0.000 description 62
- DRTQHJPVMGBUCF-XVFCMESISA-N Uridine Chemical group O[C@@H]1[C@H](O)[C@@H](CO)O[C@H]1N1C(=O)NC(=O)C=C1 DRTQHJPVMGBUCF-XVFCMESISA-N 0.000 description 62
- 238000003786 synthesis reaction Methods 0.000 description 60
- 230000015572 biosynthetic process Effects 0.000 description 58
- RTZKZFJDLAIYFH-UHFFFAOYSA-N Diethyl ether Chemical compound CCOCC RTZKZFJDLAIYFH-UHFFFAOYSA-N 0.000 description 57
- 239000000243 solution Substances 0.000 description 44
- XEKOWRVHYACXOJ-UHFFFAOYSA-N Ethyl acetate Chemical compound CCOC(C)=O XEKOWRVHYACXOJ-UHFFFAOYSA-N 0.000 description 39
- 239000011541 reaction mixture Substances 0.000 description 38
- OKKJLVBELUTLKV-UHFFFAOYSA-N Methanol Chemical compound OC OKKJLVBELUTLKV-UHFFFAOYSA-N 0.000 description 35
- UMJSCPRVCHMLSP-UHFFFAOYSA-N pyridine Natural products COC1=CC=CN=C1 UMJSCPRVCHMLSP-UHFFFAOYSA-N 0.000 description 31
- 229940045145 uridine Drugs 0.000 description 26
- DRTQHJPVMGBUCF-PSQAKQOGSA-N beta-L-uridine Natural products O[C@H]1[C@@H](O)[C@H](CO)O[C@@H]1N1C(=O)NC(=O)C=C1 DRTQHJPVMGBUCF-PSQAKQOGSA-N 0.000 description 23
- 239000002904 solvent Substances 0.000 description 23
- DRTQHJPVMGBUCF-UHFFFAOYSA-N uracil arabinoside Natural products OC1C(O)C(CO)OC1N1C(=O)NC(=O)C=C1 DRTQHJPVMGBUCF-UHFFFAOYSA-N 0.000 description 23
- 229920005989 resin Polymers 0.000 description 22
- 239000011347 resin Substances 0.000 description 22
- 239000002777 nucleoside Substances 0.000 description 21
- 239000000047 product Substances 0.000 description 20
- PEDCQBHIVMGVHV-UHFFFAOYSA-N Glycerine Chemical compound OCC(O)CO PEDCQBHIVMGVHV-UHFFFAOYSA-N 0.000 description 19
- QGZKDVFQNNGYKY-UHFFFAOYSA-N ammonia Natural products N QGZKDVFQNNGYKY-UHFFFAOYSA-N 0.000 description 19
- YXFVVABEGXRONW-UHFFFAOYSA-N Toluene Chemical compound CC1=CC=CC=C1 YXFVVABEGXRONW-UHFFFAOYSA-N 0.000 description 18
- 229910052757 nitrogen Inorganic materials 0.000 description 18
- VHYFNPMBLIVWCW-UHFFFAOYSA-N 4-Dimethylaminopyridine Chemical compound CN(C)C1=CC=NC=C1 VHYFNPMBLIVWCW-UHFFFAOYSA-N 0.000 description 16
- 238000003756 stirring Methods 0.000 description 16
- QTBSBXVTEAMEQO-UHFFFAOYSA-N Acetic acid Chemical compound CC(O)=O QTBSBXVTEAMEQO-UHFFFAOYSA-N 0.000 description 15
- XLYOFNOQVPJJNP-UHFFFAOYSA-N water Substances O XLYOFNOQVPJJNP-UHFFFAOYSA-N 0.000 description 15
- UIIMBOGNXHQVGW-UHFFFAOYSA-M Sodium bicarbonate Chemical compound [Na+].OC([O-])=O UIIMBOGNXHQVGW-UHFFFAOYSA-M 0.000 description 14
- 150000003833 nucleoside derivatives Chemical class 0.000 description 14
- 125000002103 4,4'-dimethoxytriphenylmethyl group Chemical group [H]C1=C([H])C([H])=C(C([H])=C1[H])C(*)(C1=C([H])C([H])=C(OC([H])([H])[H])C([H])=C1[H])C1=C([H])C([H])=C(OC([H])([H])[H])C([H])=C1[H] 0.000 description 13
- 108020004707 nucleic acids Proteins 0.000 description 12
- 150000007523 nucleic acids Chemical class 0.000 description 12
- 102000039446 nucleic acids Human genes 0.000 description 12
- 229910019142 PO4 Inorganic materials 0.000 description 11
- 238000006243 chemical reaction Methods 0.000 description 11
- 239000010452 phosphate Substances 0.000 description 11
- 108020004414 DNA Proteins 0.000 description 10
- VYPSYNLAJGMNEJ-UHFFFAOYSA-N Silicium dioxide Chemical compound O=[Si]=O VYPSYNLAJGMNEJ-UHFFFAOYSA-N 0.000 description 10
- 125000003277 amino group Chemical group 0.000 description 10
- 238000001212 derivatisation Methods 0.000 description 10
- 238000005160 1H NMR spectroscopy Methods 0.000 description 9
- 229910021529 ammonia Inorganic materials 0.000 description 9
- 239000002585 base Substances 0.000 description 9
- RAXXELZNTBOGNW-UHFFFAOYSA-N imidazole Natural products C1=CNC=N1 RAXXELZNTBOGNW-UHFFFAOYSA-N 0.000 description 9
- 229960000549 4-dimethylaminophenol Drugs 0.000 description 8
- 238000010511 deprotection reaction Methods 0.000 description 8
- VLKZOEOYAKHREP-UHFFFAOYSA-N hexane Substances CCCCCC VLKZOEOYAKHREP-UHFFFAOYSA-N 0.000 description 8
- 238000004128 high performance liquid chromatography Methods 0.000 description 8
- WGYKZJWCGVVSQN-UHFFFAOYSA-N propylamine Chemical compound CCCN WGYKZJWCGVVSQN-UHFFFAOYSA-N 0.000 description 8
- 238000011160 research Methods 0.000 description 8
- 239000000741 silica gel Substances 0.000 description 8
- 229910002027 silica gel Inorganic materials 0.000 description 8
- 239000011734 sodium Substances 0.000 description 8
- FPGGTKZVZWFYPV-UHFFFAOYSA-M tetrabutylammonium fluoride Chemical compound [F-].CCCC[N+](CCCC)(CCCC)CCCC FPGGTKZVZWFYPV-UHFFFAOYSA-M 0.000 description 8
- 125000005647 linker group Chemical group 0.000 description 7
- 125000003835 nucleoside group Chemical group 0.000 description 7
- 235000017557 sodium bicarbonate Nutrition 0.000 description 7
- 229910000030 sodium bicarbonate Inorganic materials 0.000 description 7
- 238000012360 testing method Methods 0.000 description 7
- LOSXTWDYAWERDB-UHFFFAOYSA-N 1-[chloro(diphenyl)methyl]-2,3-dimethoxybenzene Chemical compound COC1=CC=CC(C(Cl)(C=2C=CC=CC=2)C=2C=CC=CC=2)=C1OC LOSXTWDYAWERDB-UHFFFAOYSA-N 0.000 description 6
- OISVCGZHLKNMSJ-UHFFFAOYSA-N 2,6-dimethylpyridine Chemical compound CC1=CC=CC(C)=N1 OISVCGZHLKNMSJ-UHFFFAOYSA-N 0.000 description 6
- WFDIJRYMOXRFFG-UHFFFAOYSA-N Acetic anhydride Chemical compound CC(=O)OC(C)=O WFDIJRYMOXRFFG-UHFFFAOYSA-N 0.000 description 6
- XKRFYHLGVUSROY-UHFFFAOYSA-N Argon Chemical compound [Ar] XKRFYHLGVUSROY-UHFFFAOYSA-N 0.000 description 6
- PMZURENOXWZQFD-UHFFFAOYSA-L Sodium Sulfate Chemical compound [Na+].[Na+].[O-]S([O-])(=O)=O PMZURENOXWZQFD-UHFFFAOYSA-L 0.000 description 6
- HEMHJVSKTPXQMS-UHFFFAOYSA-M Sodium hydroxide Chemical compound [OH-].[Na+] HEMHJVSKTPXQMS-UHFFFAOYSA-M 0.000 description 6
- 125000000524 functional group Chemical group 0.000 description 6
- 239000000499 gel Substances 0.000 description 6
- 238000005259 measurement Methods 0.000 description 6
- LFETXMWECUPHJA-UHFFFAOYSA-N methanamine;hydrate Chemical compound O.NC LFETXMWECUPHJA-UHFFFAOYSA-N 0.000 description 6
- PTMHPRAIXMAOOB-UHFFFAOYSA-L phosphoramidate Chemical compound NP([O-])([O-])=O PTMHPRAIXMAOOB-UHFFFAOYSA-L 0.000 description 6
- 238000010898 silica gel chromatography Methods 0.000 description 6
- 235000000346 sugar Nutrition 0.000 description 6
- 108091032973 (ribonucleotides)n+m Proteins 0.000 description 5
- FALRKNHUBBKYCC-UHFFFAOYSA-N 2-(chloromethyl)pyridine-3-carbonitrile Chemical compound ClCC1=NC=CC=C1C#N FALRKNHUBBKYCC-UHFFFAOYSA-N 0.000 description 5
- 238000013459 approach Methods 0.000 description 5
- 125000003118 aryl group Chemical group 0.000 description 5
- 238000010549 co-Evaporation Methods 0.000 description 5
- 238000004440 column chromatography Methods 0.000 description 5
- 230000014759 maintenance of location Effects 0.000 description 5
- NBIIXXVUZAFLBC-UHFFFAOYSA-K phosphate Chemical compound [O-]P([O-])([O-])=O NBIIXXVUZAFLBC-UHFFFAOYSA-K 0.000 description 5
- 229940014800 succinic anhydride Drugs 0.000 description 5
- PAMIQIKDUOTOBW-UHFFFAOYSA-N 1-methylpiperidine Chemical compound CN1CCCCC1 PAMIQIKDUOTOBW-UHFFFAOYSA-N 0.000 description 4
- KJUGUADJHNHALS-UHFFFAOYSA-N 1H-tetrazole Chemical compound C=1N=NNN=1 KJUGUADJHNHALS-UHFFFAOYSA-N 0.000 description 4
- WEVYAHXRMPXWCK-UHFFFAOYSA-N Acetonitrile Chemical compound CC#N WEVYAHXRMPXWCK-UHFFFAOYSA-N 0.000 description 4
- 230000006820 DNA synthesis Effects 0.000 description 4
- XSQUKJJJFZCRTK-UHFFFAOYSA-N Urea Chemical compound NC(N)=O XSQUKJJJFZCRTK-UHFFFAOYSA-N 0.000 description 4
- HOPRXXXSABQWAV-UHFFFAOYSA-N anhydrous collidine Natural products CC1=CC=NC(C)=C1C HOPRXXXSABQWAV-UHFFFAOYSA-N 0.000 description 4
- 239000007864 aqueous solution Substances 0.000 description 4
- 229910052799 carbon Inorganic materials 0.000 description 4
- UTBIMNXEDGNJFE-UHFFFAOYSA-N collidine Natural products CC1=CC=C(C)C(C)=N1 UTBIMNXEDGNJFE-UHFFFAOYSA-N 0.000 description 4
- 150000003950 cyclic amides Chemical class 0.000 description 4
- OPTASPLRGRRNAP-UHFFFAOYSA-N cytosine Chemical compound NC=1C=CNC(=O)N=1 OPTASPLRGRRNAP-UHFFFAOYSA-N 0.000 description 4
- 238000001914 filtration Methods 0.000 description 4
- 125000002924 primary amino group Chemical group [H]N([H])* 0.000 description 4
- 238000000746 purification Methods 0.000 description 4
- GFYHSKONPJXCDE-UHFFFAOYSA-N sym-collidine Natural products CC1=CN=C(C)C(C)=C1 GFYHSKONPJXCDE-UHFFFAOYSA-N 0.000 description 4
- MCTWTZJPVLRJOU-UHFFFAOYSA-N 1-methyl-1H-imidazole Chemical compound CN1C=CN=C1 MCTWTZJPVLRJOU-UHFFFAOYSA-N 0.000 description 3
- CSCPPACGZOOCGX-UHFFFAOYSA-N Acetone Chemical compound CC(C)=O CSCPPACGZOOCGX-UHFFFAOYSA-N 0.000 description 3
- OKTJSMMVPCPJKN-UHFFFAOYSA-N Carbon Chemical group [C] OKTJSMMVPCPJKN-UHFFFAOYSA-N 0.000 description 3
- QOSSAOTZNIDXMA-UHFFFAOYSA-N Dicylcohexylcarbodiimide Chemical compound C1CCCCC1N=C=NC1CCCCC1 QOSSAOTZNIDXMA-UHFFFAOYSA-N 0.000 description 3
- LFQSCWFLJHTTHZ-UHFFFAOYSA-N Ethanol Chemical compound CCO LFQSCWFLJHTTHZ-UHFFFAOYSA-N 0.000 description 3
- 108091028043 Nucleic acid sequence Proteins 0.000 description 3
- FAPWRFPIFSIZLT-UHFFFAOYSA-M Sodium chloride Chemical compound [Na+].[Cl-] FAPWRFPIFSIZLT-UHFFFAOYSA-M 0.000 description 3
- RYYWUUFWQRZTIU-UHFFFAOYSA-N Thiophosphoric acid Chemical class OP(O)(S)=O RYYWUUFWQRZTIU-UHFFFAOYSA-N 0.000 description 3
- IQFYYKKMVGJFEH-XLPZGREQSA-N Thymidine Natural products O=C1NC(=O)C(C)=CN1[C@@H]1O[C@H](CO)[C@@H](O)C1 IQFYYKKMVGJFEH-XLPZGREQSA-N 0.000 description 3
- 229920003180 amino resin Polymers 0.000 description 3
- 238000004458 analytical method Methods 0.000 description 3
- 229910052786 argon Inorganic materials 0.000 description 3
- 239000012267 brine Substances 0.000 description 3
- 239000000872 buffer Substances 0.000 description 3
- 239000001913 cellulose Substances 0.000 description 3
- 229920002678 cellulose Polymers 0.000 description 3
- 238000004587 chromatography analysis Methods 0.000 description 3
- 239000012043 crude product Substances 0.000 description 3
- 239000000539 dimer Substances 0.000 description 3
- HPYNZHMRTTWQTB-UHFFFAOYSA-N dimethylpyridine Natural products CC1=CC=CN=C1C HPYNZHMRTTWQTB-UHFFFAOYSA-N 0.000 description 3
- 238000001962 electrophoresis Methods 0.000 description 3
- 238000010828 elution Methods 0.000 description 3
- 238000006460 hydrolysis reaction Methods 0.000 description 3
- 238000011068 loading method Methods 0.000 description 3
- 238000004519 manufacturing process Methods 0.000 description 3
- 238000002360 preparation method Methods 0.000 description 3
- 150000003141 primary amines Chemical class 0.000 description 3
- AOLCKOMONPVIAZ-DWNQJFHRSA-N s-[(2r,3r,4r,5r)-4-[bis(4-methoxyphenyl)-phenylmethoxy]-2-(2,4-dioxopyrimidin-1-yl)-5-(hydroxymethyl)oxolan-3-yl] benzenecarbothioate Chemical compound C1=CC(OC)=CC=C1C(C=1C=CC(OC)=CC=1)(C=1C=CC=CC=1)O[C@H]1[C@@H](SC(=O)C=2C=CC=CC=2)[C@H](N2C(NC(=O)C=C2)=O)O[C@@H]1CO AOLCKOMONPVIAZ-DWNQJFHRSA-N 0.000 description 3
- 150000003839 salts Chemical group 0.000 description 3
- 238000000926 separation method Methods 0.000 description 3
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- 125000003808 silyl group Chemical group [H][Si]([H])([H])[*] 0.000 description 1
- 108010062513 snake venom phosphodiesterase I Proteins 0.000 description 1
- 229910052708 sodium Inorganic materials 0.000 description 1
- 239000011780 sodium chloride Substances 0.000 description 1
- 239000007790 solid phase Substances 0.000 description 1
- 239000007858 starting material Substances 0.000 description 1
- 238000003860 storage Methods 0.000 description 1
- 239000000126 substance Substances 0.000 description 1
- 239000006228 supernatant Substances 0.000 description 1
- 239000000725 suspension Substances 0.000 description 1
- 238000010189 synthetic method Methods 0.000 description 1
- 239000006188 syrup Substances 0.000 description 1
- 235000020357 syrup Nutrition 0.000 description 1
- DZLFLBLQUQXARW-UHFFFAOYSA-N tetrabutylammonium Chemical compound CCCC[N+](CCCC)(CCCC)CCCC DZLFLBLQUQXARW-UHFFFAOYSA-N 0.000 description 1
- 229920002803 thermoplastic polyurethane Polymers 0.000 description 1
- 150000003573 thiols Chemical class 0.000 description 1
- 150000005691 triesters Chemical class 0.000 description 1
- LENZDBCJOHFCAS-UHFFFAOYSA-N tris Chemical compound OCC(N)(CO)CO LENZDBCJOHFCAS-UHFFFAOYSA-N 0.000 description 1
- 238000001291 vacuum drying Methods 0.000 description 1
Classifications
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
- C07H21/00—Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids
-
- Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y02—TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
- Y02P—CLIMATE CHANGE MITIGATION TECHNOLOGIES IN THE PRODUCTION OR PROCESSING OF GOODS
- Y02P20/00—Technologies relating to chemical industry
- Y02P20/50—Improvements relating to the production of bulk chemicals
- Y02P20/55—Design of synthesis routes, e.g. reducing the use of auxiliary or protecting groups
Landscapes
- Chemical & Material Sciences (AREA)
- Health & Medical Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Biochemistry (AREA)
- Molecular Biology (AREA)
- Organic Chemistry (AREA)
- Engineering & Computer Science (AREA)
- Biotechnology (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Saccharide Compounds (AREA)
Abstract
Description
Claims (1)
- 【特許請求の範囲】 1.下記の式 SS - R6 - O -R3 I アルキルであり、R4はリン保護基であり、R3はビシナル基−XR1および−Y R2をもつ環状部分であり、ここで、XおよびYはそれぞれ、O、SおよびNH からなる群から独立に選択され、R1およびR2の一方は、水酸化アンモニウムお よびメチルアミンからなる群から選択される試薬によって除去できるブロッキン グ部分であり、他方は水素、または−OH、−SHもしくは−NH2を保護する ために適したヒドロキシ保護基である。) を有する組成物を含んでなるオリゴヌクレオチド合成試薬。 2.前記環状部分が下記の構造 (式中、Bはプリンまたはピリミジン塩基である。) を有する請求項1記載のオリゴヌクレオチド試薬。 3.Bがウリジルである請求項2記載のオリゴヌクレオチド試薬。 4.R1およびR2の一方がアセチル、ベンゾイルおよびFMOCからなる群から 選択される請求項1記載のオリゴヌクレオチド合成試薬。 5.R1およびR2の一方がジメトキシトリチルである請求項1記載のオリゴヌク レオチド合成試薬。 6.固体支持体が、コントロールポアガラス、エチレンとアクリレートとのコポ リマー類、エチレンとメタクリレートとのコポリマー類、ポリスチレン、および ナイロンからなる群から選択される請求項1記載のオリゴヌクレオチド合成試薬 。 7.下記の式 (式中、SSは固体支持体、XおよびYはそれぞれO、S、およびNHからなる 群から独立に選択され、R1およびR2の一方はアルキルカルボニルまたはアリー ルカルボニル基であり、他方は水素、またはヒドロキシ保護基である。) を有する化合物を含んでなるオリゴヌクレオチド合成試薬。 8.XおよびYがそれぞれOであり、R1およびR2の一方がアセチルであり、他 方がジメトキシトリチルである請求項7記載のオリゴヌクレオチド合成試薬。 9.固体支持体がコントロールポアガラス、エチレンとアクリレートとのコポリ マー類、エチレンとメタクリレートとのコポリマー類 、ポリスチレン、ポリプロピレンおよびナイロンからなる群から選択される請求 項7記載のオリゴヌクレオチド合成試薬。 10.下記の式 (式中、SSは固体支持体であり、XおよびYはそれぞれOであり、R1および R2の一方はアルキルカルボニルまたはアリールカルボニル基であり、他方はジ メトキシトリチルである。) を含んでなるオリゴヌクレオチド合成試薬。 11.メチルアミンおよび水酸化アンモニウムからなる群から選択される第1の 化合物と、第二アミン類および第三アミン類からなる群から選択される第2の化 合物とを含んでなるオリゴヌクレオチド開裂試薬。 12.前記第1の化合物がメチルアミンである請求項11記載のオリゴヌクレオ チド開裂試薬。 13.前記第二アミンがジメチルアミン、ジイソプロピルアミンおよびジエチル アミンからなる群から選択される請求項11記載のオリゴヌクレオチド開裂試薬 。 14.前記第三アミンがトリメチルアミン水、N−メチルピロリジン水、トリエ チルアミン水およびジイソプロピルエチルアミン水からなる群から選択される請 求項11記載のオリゴヌクレオチド開裂試薬。 15.メチルアミンと、トリメチルアミン、トリエチルアミンおよ びN−メチルピロリジンからなる群から選択される第三アミンとを含んでなる水 性オリゴヌクレオチド開裂試薬。 16.低級アルキルアルコールをさらに含んでなる請求項15記載の水性オリゴ ヌクレオチド開裂試薬。 17.前記メチルアミンが約4wt%〜約39.6wt%の濃度で存在し、かつ 前記第三アミンが約0.24wt%〜約22wt%の濃度で存在する請求項15 記載の水性オリゴヌクレオチド開裂試薬。 18.前記第三アミンがトリメチルアミンである請求項17記載のオリゴヌクレ オチド開裂試薬。 19.前記メチルアミンが約8wt%〜約39.6wt%で存在し、かつ前記ト リメチルアミンが約0.24wt%〜約19.2wt%で存在する請求項18記 載のオリゴヌクレオチド開裂試薬。 20.固体支持体からオリゴヌクレオチドを開裂するための方法であって、 環状部分を介して固体支持体に付着結合したオリゴヌクレオチドを用意し、そ して 前記オリゴヌクレオチドを、メチルアミン並びに第二アミン類および第三アミ ン類からなる群から選択される化合物を含む試薬と接触させる 各工程を含んでなる方法。 21.前記オリゴヌクレオチドが、アルキルカルボニルおよびアリールカルボニ ルからなる群から選択されるブロックされた反応性基に隣接する前記環状部分に 付着結合し、かつ前記接触工程が前記反応性基の脱ブロックを含む請求項20記 載の方法。 22.前記環状部分が、エステル部分、ホスフェート部分、ホスフォルアミデー ト部分およびカルバメート部分からなる群から選択される結合部を介して前記固 体支持体に付着結合している請求項21記載の方法。 23.前記試薬が約4wt%〜約36wt%のメチルアミンを含み、かつ前記化 合物が約2.4wt%〜約22.5wt%の濃度で存在するトリメチルアミンで ある請求項20記載の方法。 24.前記結合部がエステル、ホスフォルアミダイトおよびホスフォルアミデー ト部分からなる群から選択される請求項22記載の方法。 25.オリゴヌクレオチドを合成する方法であって、 SS - R6 - O -R3 I アルキルであり、R4はホスフェート保護基であり、R3はビシナル基−XR1お よび−YR2をもつ環状部分であり、ここで、XおよびYはそれぞれ、O、Sお よびNHからなる群から独立に選択され、R1およびR2の一方は、水酸化アンモ ニウムおよびメチルアミンからなる群から選択される試薬によって除去できるブ ロッキング部分であり、かつ他方は水素、または−OH、−SHもしくは−NH2 を保護するために適したヒドロキシ保護基である。) のオリゴヌクレオチド合成試薬を用意し、 保護されたヌクレオチドモノマー単位を次々にカップリングしてオリゴヌクレ オチドを提供する 各工程を含んでなる方法。 26.前記合成試薬が (式中、SSは固体支持体であり、XおよびYはそれぞれOであり、R1および R2の一方はアルキルカルボニルまたはアリールカルボニル基であり、他方はヒ ドロキシ保護基である。) である請求項25記載のオリゴヌクレオチドを合成する方法。 27.前記合成試薬が (式中、SSは固体支持体であり、XおよびYはそれぞれOであり、R1および R2の一方はアルキルカルボニルまたはアリールカルボニル基であり、他方はジ メトキシトリチルである。) である請求項25記載の方法。 28.LiClをさらに含む請求項17記載の試薬。
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US08/636,113 | 1996-04-22 | ||
| US08/636,113 US5869696A (en) | 1996-04-22 | 1996-04-22 | Universal solid supports and methods for their use |
| PCT/US1997/006648 WO1997040458A2 (en) | 1996-04-22 | 1997-04-21 | Universal solid supports and methods for their use |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| JP2000500158A true JP2000500158A (ja) | 2000-01-11 |
Family
ID=24550496
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP9538250A Pending JP2000500158A (ja) | 1996-04-22 | 1997-04-21 | ユニバーサルな固体支持体およびその使用方法 |
Country Status (5)
| Country | Link |
|---|---|
| US (1) | US5869696A (ja) |
| EP (1) | EP0843684B1 (ja) |
| JP (1) | JP2000500158A (ja) |
| DE (1) | DE69724218T2 (ja) |
| WO (1) | WO1997040458A2 (ja) |
Cited By (3)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| JP2005534629A (ja) * | 2002-04-26 | 2005-11-17 | アベシア・リミテッド | オリゴヌクレオチド調製方法 |
| KR100886139B1 (ko) | 2007-11-13 | 2009-02-27 | 주식회사 삼천리제약 | 올리고뉴클레오타이드의 제조방법 |
| JP2019510087A (ja) * | 2016-03-13 | 2019-04-11 | ウェイブ ライフ サイエンシズ リミテッドWave Life Sciences Ltd. | ホスホラミダイト及びオリゴヌクレオチド合成のための組成物並びに方法 |
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| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| AU755239B2 (en) | 1998-02-11 | 2002-12-05 | University Of Houston, The | Method and apparatus for chemical and biochemical reactions using photo-generated reagents |
| EP1006121B1 (en) * | 1998-12-02 | 2003-05-02 | Council of Scientific and Industrial Research | A universal polymer support for the synthesis of oligonucleotides |
| US6465628B1 (en) * | 1999-02-04 | 2002-10-15 | Isis Pharmaceuticals, Inc. | Process for the synthesis of oligomeric compounds |
| WO2001016166A2 (en) * | 1999-08-27 | 2001-03-08 | The United States Of America, Represented By The Secretary, Department Of Health And Human Services | Polypeptides, comprising il-6 ligand-binding receptor domains, and related nucleic acids, antibodies, compositions, and methods of use |
| EP1289911A2 (en) * | 2000-06-13 | 2003-03-12 | Proligo LLC | Universal solid supports for solid phase oligosynthesis and methods for their preparation and use |
| AU2002220870A1 (en) * | 2000-12-05 | 2002-06-18 | Avecia Limited | Process for the preparation of phosphorothionate oligonucleotides |
| US6768005B2 (en) | 2000-12-20 | 2004-07-27 | Avecia Limited | Process |
| US7211654B2 (en) | 2001-03-14 | 2007-05-01 | Regents Of The University Of Michigan | Linkers and co-coupling agents for optimization of oligonucleotide synthesis and purification on solid supports |
| US7230095B2 (en) * | 2001-04-30 | 2007-06-12 | Avecia Biotechnology Inc. | Immobilization of oligonucleotides onto solid supports |
| US7034147B2 (en) * | 2001-11-29 | 2006-04-25 | Irm Llc | Nucleoside analog libraries |
| AU2002359534A1 (en) * | 2001-11-29 | 2003-06-10 | Irm Llc | Nucleoside analog libraries |
| US20040242897A1 (en) * | 2002-07-31 | 2004-12-02 | Guzaev Andrei P. | Universal support media for synthesis of oligomeric compounds |
| US6653468B1 (en) | 2002-07-31 | 2003-11-25 | Isis Pharmaceuticals, Inc. | Universal support media for synthesis of oligomeric compounds |
| AU2003256857A1 (en) * | 2002-08-08 | 2004-02-25 | Dharmacon, Inc. | Short interfering rnas having a hairpin structure containing a non-nucleotide loop |
| EP1585755B1 (en) * | 2002-12-31 | 2015-08-05 | Sigma-Aldrich Co. LLC | Methods and compositions for the tandem synthesis of two or more oligonuleotides on the same solid support |
| US7202264B2 (en) * | 2003-01-31 | 2007-04-10 | Isis Pharmaceuticals, Inc. | Supports for oligomer synthesis |
| US20050130736A1 (en) * | 2003-12-12 | 2005-06-16 | Lottofone, Inc. | Prepaid wagering card |
| US20090036660A1 (en) * | 2007-07-31 | 2009-02-05 | Joel Myerson | Methods and compositions for generating mixtures of nucleic acid molecules |
| US20090075840A1 (en) * | 2007-09-18 | 2009-03-19 | Joel Myerson | Methods And Compositions For Generating Mixtures Of Nucleic Acid Molecules |
| JP5438922B2 (ja) * | 2008-06-25 | 2014-03-12 | 日東電工株式会社 | 核酸の製造方法 |
| CA2933456A1 (en) * | 2015-06-18 | 2016-12-18 | Nitto Denko Corporation | Method of cutting out rna oligonucleotide |
| WO2018098264A1 (en) | 2016-11-23 | 2018-05-31 | Wave Life Sciences Ltd. | Compositions and methods for phosphoramidite and oligonucleotide synthesis |
| CN111704644B (zh) * | 2020-08-18 | 2020-12-04 | 苏州金唯智生物科技有限公司 | 一种氨解液及氨解方法 |
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| Publication number | Priority date | Publication date | Assignee | Title |
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| US2068132A (en) * | 1933-04-19 | 1937-01-19 | Ig Farbenindustrie Ag | Production of monomethylamine and dimethylamine |
| US2547064A (en) * | 1946-11-29 | 1951-04-03 | Ici Ltd | Separation of methyl amines |
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-
1996
- 1996-04-22 US US08/636,113 patent/US5869696A/en not_active Expired - Lifetime
-
1997
- 1997-04-21 DE DE69724218T patent/DE69724218T2/de not_active Expired - Lifetime
- 1997-04-21 WO PCT/US1997/006648 patent/WO1997040458A2/en not_active Ceased
- 1997-04-21 EP EP97922372A patent/EP0843684B1/en not_active Expired - Lifetime
- 1997-04-21 JP JP9538250A patent/JP2000500158A/ja active Pending
Cited By (6)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| JP2005534629A (ja) * | 2002-04-26 | 2005-11-17 | アベシア・リミテッド | オリゴヌクレオチド調製方法 |
| KR100886139B1 (ko) | 2007-11-13 | 2009-02-27 | 주식회사 삼천리제약 | 올리고뉴클레오타이드의 제조방법 |
| JP2019510087A (ja) * | 2016-03-13 | 2019-04-11 | ウェイブ ライフ サイエンシズ リミテッドWave Life Sciences Ltd. | ホスホラミダイト及びオリゴヌクレオチド合成のための組成物並びに方法 |
| US11407775B2 (en) | 2016-03-13 | 2022-08-09 | Wave Life Sciences Ltd. | Compositions and methods for phosphoramidite and oligonucleotide synthesis |
| JP7286320B2 (ja) | 2016-03-13 | 2023-06-05 | ウェイブ ライフ サイエンシズ リミテッド | ホスホラミダイト及びオリゴヌクレオチド合成のための組成物並びに方法 |
| JP2023113730A (ja) * | 2016-03-13 | 2023-08-16 | ウェイブ ライフ サイエンシズ リミテッド | ホスホラミダイト及びオリゴヌクレオチド合成のための組成物並びに方法 |
Also Published As
| Publication number | Publication date |
|---|---|
| DE69724218D1 (de) | 2003-09-25 |
| WO1997040458A2 (en) | 1997-10-30 |
| EP0843684A2 (en) | 1998-05-27 |
| WO1997040458A3 (en) | 1997-12-04 |
| US5869696A (en) | 1999-02-09 |
| DE69724218T2 (de) | 2004-06-03 |
| EP0843684B1 (en) | 2003-08-20 |
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