PL3207481T3 - Redukowanie błędu w przewidywanych powiązaniach genetycznych - Google Patents

Redukowanie błędu w przewidywanych powiązaniach genetycznych

Info

Publication number
PL3207481T3
PL3207481T3 PL15850218T PL15850218T PL3207481T3 PL 3207481 T3 PL3207481 T3 PL 3207481T3 PL 15850218 T PL15850218 T PL 15850218T PL 15850218 T PL15850218 T PL 15850218T PL 3207481 T3 PL3207481 T3 PL 3207481T3
Authority
PL
Poland
Prior art keywords
reducing error
genetic relationships
predicted genetic
predicted
relationships
Prior art date
Application number
PL15850218T
Other languages
English (en)
Inventor
Mathew J. Barber
Yong Wang
Keith D. NOTO
Kenneth G. CHAHINE
Catherine Ann Ball
Original Assignee
Ancestry.Com Dna, Llc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Ancestry.Com Dna, Llc filed Critical Ancestry.Com Dna, Llc
Publication of PL3207481T3 publication Critical patent/PL3207481T3/pl

Links

Classifications

    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/40Population genetics; Linkage disequilibrium
    • GPHYSICS
    • G06COMPUTING OR CALCULATING; COUNTING
    • G06NCOMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
    • G06N5/00Computing arrangements using knowledge-based models
    • G06N5/04Inference or reasoning models
    • G06N5/048Fuzzy inferencing
    • GPHYSICS
    • G06COMPUTING OR CALCULATING; COUNTING
    • G06NCOMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
    • G06N7/00Computing arrangements based on specific mathematical models
    • G06N7/01Probabilistic graphical models, e.g. probabilistic networks
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B10/00ICT specially adapted for evolutionary bioinformatics, e.g. phylogenetic tree construction or analysis
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/20Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6881Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for tissue or cell typing, e.g. human leukocyte antigen [HLA] probes

Landscapes

  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Theoretical Computer Science (AREA)
  • Medical Informatics (AREA)
  • General Health & Medical Sciences (AREA)
  • Biophysics (AREA)
  • Evolutionary Biology (AREA)
  • Biotechnology (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Genetics & Genomics (AREA)
  • Software Systems (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Molecular Biology (AREA)
  • Chemical & Material Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Evolutionary Computation (AREA)
  • Data Mining & Analysis (AREA)
  • Artificial Intelligence (AREA)
  • Physiology (AREA)
  • General Physics & Mathematics (AREA)
  • Computing Systems (AREA)
  • Mathematical Physics (AREA)
  • General Engineering & Computer Science (AREA)
  • Bioethics (AREA)
  • Animal Behavior & Ethology (AREA)
  • Public Health (AREA)
  • Epidemiology (AREA)
  • Databases & Information Systems (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • Ecology (AREA)
  • Automation & Control Theory (AREA)
  • Fuzzy Systems (AREA)
  • Computational Linguistics (AREA)
  • Mathematical Analysis (AREA)
  • Probability & Statistics with Applications (AREA)
  • Mathematical Optimization (AREA)
PL15850218T 2014-10-14 2015-10-14 Redukowanie błędu w przewidywanych powiązaniach genetycznych PL3207481T3 (pl)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US201462063849P 2014-10-14 2014-10-14
PCT/US2015/055579 WO2016061260A1 (en) 2014-10-14 2015-10-14 Reducing error in predicted genetic relationships
EP15850218.7A EP3207481B1 (en) 2014-10-14 2015-10-14 Reducing error in predicted genetic relationships

Publications (1)

Publication Number Publication Date
PL3207481T3 true PL3207481T3 (pl) 2020-05-18

Family

ID=55747284

Family Applications (1)

Application Number Title Priority Date Filing Date
PL15850218T PL3207481T3 (pl) 2014-10-14 2015-10-14 Redukowanie błędu w przewidywanych powiązaniach genetycznych

Country Status (9)

Country Link
US (2) US10720229B2 (pl)
EP (2) EP3207481B1 (pl)
AU (1) AU2015332507B2 (pl)
CA (1) CA2964780C (pl)
DK (1) DK3207481T3 (pl)
ES (1) ES2762942T3 (pl)
MX (1) MX2017004989A (pl)
PL (1) PL3207481T3 (pl)
WO (1) WO2016061260A1 (pl)

Families Citing this family (31)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2009051766A1 (en) 2007-10-15 2009-04-23 23Andme, Inc. Family inheritance
US9336177B2 (en) 2007-10-15 2016-05-10 23Andme, Inc. Genome sharing
WO2010077336A1 (en) 2008-12-31 2010-07-08 23Andme, Inc. Finding relatives in a database
US8990250B1 (en) 2011-10-11 2015-03-24 23Andme, Inc. Cohort selection with privacy protection
US10437858B2 (en) 2011-11-23 2019-10-08 23Andme, Inc. Database and data processing system for use with a network-based personal genetics services platform
US10025877B2 (en) 2012-06-06 2018-07-17 23Andme, Inc. Determining family connections of individuals in a database
US9836576B1 (en) 2012-11-08 2017-12-05 23Andme, Inc. Phasing of unphased genotype data
US9213947B1 (en) 2012-11-08 2015-12-15 23Andme, Inc. Scalable pipeline for local ancestry inference
CA2964780C (en) * 2014-10-14 2023-03-21 Ancestry.Com Dna, Llc Reducing error in predicted genetic relationships
US10679729B2 (en) * 2014-10-17 2020-06-09 Ancestry.Com Dna, Llc Haplotype phasing models
CA2967013C (en) 2014-11-06 2023-09-05 Ancestryhealth.Com, Llc Predicting health outcomes
MX2018000622A (es) * 2015-07-13 2018-07-06 Ancestry Com Dna Llc Sistema de determinacion de etnicidad genetica local.
US11124831B2 (en) 2016-08-10 2021-09-21 New York Genome Center Ultra-low coverage genome sequencing and uses thereof
US10896741B2 (en) 2018-08-17 2021-01-19 Ancestry.Com Dna, Llc Prediction of phenotypes using recommender systems
EP3874510A4 (en) 2018-10-31 2022-08-03 Ancestry.com DNA, LLC ESTIMATION OF PHENOTYPES USING DNA, PEDIGREE AND HISTORICAL DATA
US20210020266A1 (en) 2019-07-19 2021-01-21 23Andme, Inc. Phase-aware determination of identity-by-descent dna segments
US12050629B1 (en) 2019-08-02 2024-07-30 Ancestry.Com Dna, Llc Determining data inheritance of data segments
WO2021024074A1 (en) * 2019-08-02 2021-02-11 Ancestry.Com Dna, Llc Clustering of matched segments to determine linkage of dataset in a database
WO2021051018A1 (en) 2019-09-13 2021-03-18 23Andme, Inc. Methods and systems for determining and displaying pedigrees
KR20220115952A (ko) * 2019-11-18 2022-08-19 엠바크 베터리너리, 인크. 조상 근연도를 결정하기 위한 방법 및 시스템
US11817176B2 (en) 2020-08-13 2023-11-14 23Andme, Inc. Ancestry composition determination
EP4200858A4 (en) 2020-10-09 2024-08-28 23Andme, Inc. FORMATTING AND STORAGE OF GENETIC MARKERS
WO2022243914A1 (en) 2021-05-20 2022-11-24 Ancestry.Com Operations Inc. Domain knowledge guided selection of nodes for addition to data trees
WO2023281450A1 (en) 2021-07-09 2023-01-12 Ancestry.Com Operations Inc. Handwriting recognition pipelines for genealogical records
US20250032199A1 (en) 2022-02-10 2025-01-30 Digital Surgery Systems, Inc. Microphone directionality control based on surgeon's command
US20230281310A1 (en) * 2022-03-01 2023-09-07 Meta Plataforms, Inc. Systems and methods of uncertainty-aware self-supervised-learning for malware and threat detection
WO2023175516A1 (en) 2022-03-15 2023-09-21 Ancestry.Com Operations Inc. Machine-learning based automated document integration into genealogical trees
CA3256221A1 (en) 2022-04-13 2023-10-19 Ancestry.Com Dna, Llc Accelerated Hidden Markov Models for Genotype Analysis
US12461970B2 (en) 2022-08-19 2025-11-04 Ancestry.Com Dna, Llc Catalog-based data inheritance determination
WO2025049155A1 (en) 2023-08-25 2025-03-06 Ancestry.Com Dna, Llc Determining data inheritance of genomic data segments
US20260017284A1 (en) 2024-07-09 2026-01-15 Ancestry.Com Dna, Llc Determining labels of inheritance datasets using simulated data instances

Family Cites Families (9)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2010077336A1 (en) * 2008-12-31 2010-07-08 23Andme, Inc. Finding relatives in a database
US20120053845A1 (en) * 2010-04-27 2012-03-01 Jeremy Bruestle Method and system for analysis and error correction of biological sequences and inference of relationship for multiple samples
WO2012099890A1 (en) * 2011-01-18 2012-07-26 University Of Utah Research Foundation Estimation of recent shared ancestry
CA2883245A1 (en) * 2012-09-06 2014-03-13 Ancestry.Com Dna, Llc Using haplotypes to infer ancestral origins for recently admixed individuals
US9390225B2 (en) 2013-03-15 2016-07-12 Ancestry.Com Dna, Llc Family networks
CA2964780C (en) * 2014-10-14 2023-03-21 Ancestry.Com Dna, Llc Reducing error in predicted genetic relationships
US20170213127A1 (en) * 2016-01-24 2017-07-27 Matthew Charles Duncan Method and System for Discovering Ancestors using Genomic and Genealogic Data
US11124831B2 (en) * 2016-08-10 2021-09-21 New York Genome Center Ultra-low coverage genome sequencing and uses thereof
CA3075182A1 (en) * 2017-09-07 2019-03-14 Regeneron Pharmaceuticals, Inc. Systems and methods for leveraging relatedness in genomic data analysis

Also Published As

Publication number Publication date
NZ731808A (en) 2021-10-29
ES2762942T3 (es) 2020-05-26
DK3207481T3 (da) 2020-02-03
EP3207481A4 (en) 2018-04-04
AU2015332507B2 (en) 2021-09-02
CA2964780C (en) 2023-03-21
US20200286591A1 (en) 2020-09-10
EP3207481A1 (en) 2017-08-23
AU2015332507A1 (en) 2017-06-01
US20170220738A1 (en) 2017-08-03
WO2016061260A1 (en) 2016-04-21
EP3207481B1 (en) 2019-12-04
CA2964780A1 (en) 2016-04-21
MX2017004989A (es) 2017-11-13
EP3621080B1 (en) 2023-09-06
US10720229B2 (en) 2020-07-21
EP3621080A1 (en) 2020-03-11

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