WO2012141568A1 - Procédé de régulation de la teneur en lignine dans la plante hevea brasiliensis - Google Patents

Procédé de régulation de la teneur en lignine dans la plante hevea brasiliensis Download PDF

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Publication number
WO2012141568A1
WO2012141568A1 PCT/MY2012/000011 MY2012000011W WO2012141568A1 WO 2012141568 A1 WO2012141568 A1 WO 2012141568A1 MY 2012000011 W MY2012000011 W MY 2012000011W WO 2012141568 A1 WO2012141568 A1 WO 2012141568A1
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WIPO (PCT)
Prior art keywords
seq
nucleic acid
plant
sequence
hevea brasiliensis
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Ceased
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PCT/MY2012/000011
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English (en)
Inventor
Maqsudul Alam
Mohd Nazalan Mohd NAJIMUDIN
Jennifer Ann SAITO
Abhilash Othalathara USHARRAJ
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Universiti Sains Malaysia (USM)
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Universiti Sains Malaysia (USM)
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    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79—Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/82—Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
    • C12N15/8241—Phenotypically and genetically modified plants via recombinant DNA technology
    • C12N15/8242—Phenotypically and genetically modified plants via recombinant DNA technology with non-agronomic quality (output) traits, e.g. for industrial processing; Value added, non-agronomic traits
    • C12N15/8243—Phenotypically and genetically modified plants via recombinant DNA technology with non-agronomic quality (output) traits, e.g. for industrial processing; Value added, non-agronomic traits involving biosynthetic or metabolic pathways, i.e. metabolic engineering, e.g. nicotine, caffeine
    • C12N15/8255—Phenotypically and genetically modified plants via recombinant DNA technology with non-agronomic quality (output) traits, e.g. for industrial processing; Value added, non-agronomic traits involving biosynthetic or metabolic pathways, i.e. metabolic engineering, e.g. nicotine, caffeine involving lignin biosynthesis
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00—Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/0004—Oxidoreductases (1.)
    • C12N9/0006—Oxidoreductases (1.) acting on CH-OH groups as donors (1.1)

Definitions

  • the present invention relates to a method in regulating lignin content in the plant of Hevea brasiliensis and a transgenic Hevea brasiliensis plant acquired thereof. More specifically, the lignin content in the plant of Hevea brasiliensis can be regulated via modulating expression of the lignification-associated enzymes Background Of The Invention
  • cellulose b-1, 4-glucan
  • lignin phenolic polymer
  • hemicelluloses heterogeneous polysaccharides
  • cellulose microfibrils give cell walls tensile strength
  • lignin encasing the cellulose microfibrils imparts rigidity to cell walls.
  • Lignin provides the essential mechanical reinforcement for growth of the tree, while plant overloaded with lignin substantially limits the use of plant material for fiber, chemical, and energy production. Particularly, in plants like Hevea brasiliensis that accumulation of too much lignin may affect quantity of the latex can be harvested thereof.
  • transgenic tobacco plants are described in United States patent application no. 5850060% and 5952486 respectively. These tobacco plants particularly contains cDNAs templates, of enzymes involved in lignin production, derived from Pinus radiata and Eucalyptus grandis. These applications claim the transgenic plants show relatively lower lignin content compared to wild type tobacco plants. Other approaches to attain similar object can be found in International Patent Publication no. WO9423044.
  • the present invention aims to provide a method capable of reducing or modulating lignin content in the plant of Hevea brasiliensis .
  • the disclosed method is highly lignin- specific with less inference towards other biosynthesis pathways.
  • the disclosed method only genetically intervenes monolignol synthesis pathway responsible for lignin production in opposed to methods offered in most of the prior arts.
  • Another object of the present invention is to disclose a transgenic plant of Hevea brasiliensis with reduced lignin content.
  • the transgenic Hevea brasiliensis is rendered with reduced lignin content by suppressing expression of the lignin-producing enzymes in the plant.
  • Still another object of the present invention is to provide isolated polynucleotides having specific nucleotide sequence to facilitate performing of the disclosed method and acquiring of the transgenic Hevea brasiliensis plant.
  • At least one of the preceding objects is met, in whole or in part, by the present invention, in which one of the embodiment of the present invention involves a method of reducing production of lignin content in the plant of Hevea brasiliensis comprising the step of down-regulating expression of at least one nucleic acid template containing sequence SEQ ID No.l, SEQ ID No.2, SEQ ID No.3 and SEQ ID No.4 in at least one cell.
  • the down-regulating step of the disclosed method can be conducted by introducing a dsRNA having a strand containing at least 60% sequential nucleic acids complementary to the nucleic acid template in the cell.
  • the down-regulating step can be achieved by transforming the cell with a recombinant gene construct encoding open reading frame containing nucleic acid sequence having at least 70% sequential nucelotides identical to SEQ ID No.l, SEQ ID No.2, SEQ ID No.3 or SEQ ID No.4 and expressing the nucleic acid sequence of the DNA construct via expression control of a lignification-associated promoter.
  • a transgenic plant of Hevea brasiliensis with reduced lignin content is another embodiment disclosed in the present invention.
  • the transgenic plant is characterized in that expression of at least one nucleic acid template containing sequence SEQ ID No.l, SEQ ID No.2, SEQ ID No.3 and SEQ ID No.4 in at least one cell is down-regulated More preferably, in one embodiment, the condition of reduced- lignin content in the transgenic plant is realized via the setting forth methods.
  • Further embodiment of the disclosed invention includes an isolated polynucleotide encoding lignification-associated enzyme of the plant Hevea brasiliensis comprising nucleotide sequence as set forth in SEQ ID No.l, SEQ ID No.2, SEQ ID No.3 or SEQ ID No.4 and a recombinant gene construct containing the set forth polynucleotide.
  • the present invention also provide isolated polypeptide containing amino acids sequence or fragments thereof encoded by the mentioned polynucleotide.
  • Figure 1 shows a general biosynthetic pathway of lignin in woody angiosperms
  • Figure 2 shows the polynucleotide sequence SEQ ID No.l encoding the enzyme cinnamoyl A reductase 1 (CCR1) of the plant Hevea brasiliensis ;
  • Figure 3 shows the polynucleotide sequence SEQ ID No.2 encoding the enzyme cinnamoyl A reductase 2 (CCR2) of the plant Hevea brasiliensis ;
  • Figure 4 shows the polynucleotide sequence SEQ ID No.3 encoding the enzyme cinnamyl alcohol dehydrogenase 1 (CADI);
  • Figure 5 shows the polynucleotide sequence SEQ ID No.4 encoding the enzyme cinnamyl alcohol dehydrogenase 2 (CAD2);
  • FIG. 6 shows the polypeptides sequence SEQ ID No.5 encoded by the SEQ
  • Figure 7 shows the polypeptides sequence SEQ ID No.6 encoded by the SEQ
  • FIG. 8 shows the polypeptides sequence SEQ ID No.7 encoded by the SEQ
  • Figure 9 shows the polypeptides sequence SEQ ID No.8 encoded by the SEQ Detailed Description Of The Invention
  • gene is defined as the genomic sequence of the plant Hevea brasilliensis particularly polynucleotide sequences encoding polypeptide sequence of the enzyme CCR1. CCR2, CADI and/or CAD2.
  • polynucleotide is a nucleic acid containing a sequence that is greater than about 100 nucleotides in length.
  • oligonucleotide is a short polynucleotide or a portion of polynucleotide which preferably comprises from about 8 to 35 nucleotides.
  • nucleotides contained within the oligonucleotides can be analogs or derivatives of naturally occurring nucleotides.
  • the abbreviation used throughout the specification to refer to nucleic acids comprising nucleotide sequences are the conventional one-letter abbreviations.
  • nucleic acid sequences that are presented as a series of one-letter abbreviations are presented in the 5 '->3 'direction.
  • wild-type refers to a gene or gene product that has characteristics of that gene or gene product that is most frequently observed in population and is, thus, arbitrarily designated the “normal” or “wild-type” form of the gene.
  • variant refers to gene or gene product that displays modifications in sequence and/or functional properties
  • complementary and derivatives thereof are used in reference to pairing of nucleic acids by the well known rules that A pairs with T or U and C pairs with G. Complement can be “partial” or "complete”.
  • nucleic acid bases are matched according to the base pairing rules; while in complete or total complement, all the bases are matched according to the paring rule.
  • the degree of complement between the nucleic acid strands may have significant effects on the efficiency and strength of hybridization between nucleic acid strands as well known in the art. This may be of particular in detection method that depends upon binding between nucleic acids.
  • the present invention includes a method of reducing production of lignin content in the plant of Hevea brasilliensis comprising the step of down-regulating expression of at least one nucleic acid template containing sequence SEQ ID No.l, SEQ ID No.2, SEQ ID No.3 and SEQ ID No.4 in at least one cell.
  • These sequences encode for the enzyme cinnamoyl A reductase 1 (CCR1), cinnamoyl A reductase 2 (CCR2), cinnamyl alcohol dehydrogenase 1 (CADI) and cinnamyl alcohol dehydrogenase 2 (CAD2) respectively are shown in the figure 2 to 5.
  • lignin in the plant of Hevea brasiliensis is performed through a multi-stage synthetic pathway that each stage in the pathway is catalyzed by a specific enzyme type.
  • the CCR1 , CCR2, CADI and CAD2 are known to be responsible in synthesizing guaiacyl monolignol and syringyl monolignol which can be turned into free radicals to constitute core structure of lignin in the Hevea brasiliensis upon polymerization.
  • guaiacyl monolignol and syringyl monolignol are deemed as the specific precursors to be employed in Hevea brasiliensis for producing lignin.
  • the present invention discloses a method to genetically intervene production of the enzymes converting cinnamoyl - Co A to monolignol in the plant cells therefore capable of modulating the lignin
  • the down-regulating step is conducted by transforming the cell with a recombinant gene construct encoding open reading frame containing nucleic acid sequence having at least 70% sequential nucelotides identical to SEQ ID No.l , SEQ ID No.2, SEQ ID No.3 or SEQ ID No.4 and expressing the nucleic acid sequence of the DNA construct via expression control of a lignification- associated promoter.
  • the open reading frame containing nucleic acid sequence having at least 70% sequential nucelotides identical to SEQ ID No.l, SEQ ID No.2, SEQ ID No.3 or SEQ ID No.4 allows generation of an antisense mR A capable of hybridizing onto the complementary mRNA having nucleotide sequence of SEQ ID No.l , SEQ ID No.2, SEQ ID No.3 or SEQ ID No.4 preventing transcription of the hybridized mRNA to produce the encoded enzyme thereof. More preferably, the expression of the antisense mRNA in the present invention is initiated by the lignification-associated promoter located at upper stream 3 ⁇ 4f the open reading frame.
  • lignification-associated promoter in the present invention renders the expression of the antisense mRNA corresponding to the expression of the CCR1, CCR2, CADI and/or CAD2 mRNA in the transfected cell upon receipt of the signal to generate lignin in the Hevea brasiliensis .
  • the lignification-associated promoter serves as a regulatory mechanism to control expression of the antisense mRNA; particularly only in the specific cell types being signaled by the plant to produce lignin.
  • Such approach renders the disclosed method only generate the antisense mRNA specifically in the lignin producing cells and not having any effect in other transfected non-lignin producing cell types.
  • the disclosed method may selectively transform only the lignin-producing cells with the recombinant gene construct. More specifically, xylem tissue, which gives rise to lignin accumulation in the plant, is transfected with the recombinant gene construct. With only the targeted cells are tansfected, other pathways in the genetically modified Hevea brasiliensis is less likely disrupted.
  • Another approach to silence expression the CCRl, CCR2, CADI and/or CAD2 in the present invention can be performed through RNA interference that the down- least 60% sequential nucleic acids complementary to the nucleic acid template in the cell.
  • RNA interference RNA interference
  • other embodiments of the disclosed method for prohibiting expression of the CCR1, CCR2, CADI or CAD2 gene may involve hairpin RNA interference as well.
  • FIG. 1 is a transgenic plant of Hevea brasiliensis with reduced lignin content characterized in that expression of at least one nucleic acid template containing sequence SEQ ID No. l, SEQ ID No.2, SEQ ID No.3 and SEQ ID No.4 in at least one cell is down-regulated.
  • the nucleic acid template containing sequence SEQ ID No.l , SEQ ID No.2, SEQ ID No.3 and SEQ ID No.4 encodes polypeptides sequence of the enzyme CCR1, CCR2, CADI or CAD2 respectively.
  • the down-regulation of SEQ ID No.1 , SEQ ID No.2, SEQ ID No. 3 and SEQ ID No.4 in the transgenic plant can be performed via expression of complementary antisense mRNA in the targeted cells.
  • the targeted cells are transfected with a recombinant gene construct encoding open reading frame containing nucleic acid sequence having at least 70% sequential nucelotides identical to SEQ ID No.l, SEQ ID No.2, SEQ ID No.3 or SEQ ID No.4 and expressing the associated promoter.
  • the lignification-associated promoter serves as a regulatory mechanism to control expression of the antisense mRNA of the polynucleotides of EQ ID No.l, SEQ ID No.2, SEQ ID No.3 and SEQ ID No.4.
  • the similar signal shall simultaneously activate lignification-associated promoter to express the antisense mRNA to act on the complementary endogenous sense mRNA encoding polypeotides sequence of the CCR1 , CCR2, CADI and/or CAD2.
  • the disclosed disclosed transgenic Hevea brasiliensis may only have the selected lignin-producing cells transfect the recombinant gene construct.
  • At least part of xylem tissue of the transgenic Hevea brasiliensis is transfected with the recombinant gene construct to achieve significant lignin content reduced in the transgenic plant.
  • the targeted cells are tansfected, other pathways in the genetically modified Hevea brasiliensis of the present invention is less likely disrupted.
  • RNA interference may be employed in the present invention as another approach in the disclosed transgenic plant to down-regulate expression SEQ ID No.l, SEQ ID No.2, SEQ ID No.3 and/or SEQ ID No.4 in the disclosed transgenic plant that a dsRNA having a strand containing at least 60% sequential nucleic acids complementary to the nucleic acid template in introduced into the cells through any known methods in the field.
  • the dsRNA for carrying out the RNA interference in the transgenic plant may range from as short as 20bp to few hundred bp.
  • RNA strand of the introduced dsRNA having complementary sequence towards the mRNA of SEQ ID No.l, SEQ ID No.2, SEQ ID No.3 and/or SEQ ID No.4 functions as the guide strand to couple with and lead the RNA-induced silencing complexes in the transfected cells to degrade the complementary the mRNA with SEQ ID No.l, SEQ ID No.2, SEQ ID No.3 and/or SEQ ID No.4 2 therefore prohibits subsequent transcription of the CCR1 , CCR2, CADI and/or CAD2 enzymes from the mRNA.
  • RNA molecule either fully or partially complementary to the SEQ ID No.l, SEQ ID No.2, SEQ ID No.3 or SEQ ID No.4 is expressed in the transfected cells resulting in inhibition of the expression of the correspondin endogenous mRNA encoding CCR1, CCR2, CADI or CAD2
  • the present invention also discloses an isolated polynucleotide encoding lignification-associated enzyme of the plant Hevea brasiliensis comprising nucleotide sequence as set forth in SEQ ID No.l , SEQ q ID No.2, SEQ ID No.3 or SEQ ID No.4.
  • the isolated polynucleotide of SEQ ID No.l , SEQ ID No.2, SEQ ID No.3 and SEQ ID No.4 encode for the polypeptides sequence of the enzyme CCRl, CCR2, CADI or CAD2 respectively for the plant of Hevea bransiliensis.
  • the disclosed isolated polynucleotides of the present invention permits genetic intervention to be performed onto the plants of Hevea brasiliensis to significantly reduce lignin production via the method described above.
  • These disclosed polynucleotides sequences are specifically for the plant of Hevea brasiliensis that such specificity is important to ensure achievement of the mentioned object in decresing lignin content.
  • another embodiment of the present invention includes also isolated polypeptide containing full or part of amino acids sequence encoded by the above mentioned polynucleotide of SEQ ID No.l , SEQ ID No.2, SEQ ID No.3 and SEQ ID No.4. These polypeptides can be synthesized chemically or biologically using methods known in the arts.
  • Still another embodiment of the present invention is a recombinant gene construct containing polynucleotide having sequence of SEQ ID No.l, SEQ ID No.2, SEQ ID No.3 and SEQ ID No.4.
  • the recombinant gene construct is a vector for delivering the genetic material needed to modulate the lignin content in the Hevea bransilliensis.
  • the PCR reaction (50 ⁇ ) contained ⁇ ⁇ of cDNA, 20 pmoles of each primers, 5 of 10X Pfu Buffer, 5 ⁇ of 2.5 mM dNTP mix and 1.0 unit of PfuTurbo® DNA polymerase (Stratagene). PCR was carried out in VeritiTM Thermal Cycler (Applied Biosystems) using the following conditions. Initial denaturation for 5 min at 95°C followed by 35 cycles of denaturation at 95°C for 30 sec, annealing at 54-55°C for 30 sec and extension at 72°C for 1 to 2.0 min depending on the length of the targeted gene, with a final extension at 72°C for 7 min.
  • the PCR product was analysed by 1% agarose gel using IX TAE buffer and the amplicon was eluted from the gel using GENECLEAN® TURBO Gel band elution kit (MP Biomedicals) following the manufacturer's instructions.
  • the purified PCR product was ligated into pCR® 4 Blunt TOPO® Vector (Invitrogen) and transformed into One Shot® MachlTM-T1R
  • Plasmids were isolated from putative colonies using QIAprep Spin® Miniprep Kit (Qiagen) following the manufacturer's instructions. The presence of the insert was checked by digesting with EcoRI (NEB) and positive plasmids were subjected to sequencing.
  • the nucleotide sequence and the aminoacid sequences were analysed by BLASTN and BLASTP programmes respectively.

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Abstract

La présente invention concerne un procédé de réduction de la production de lignine dans la plante Hevea brasiliensis comprenant l'étape consistant à sous-réguler l'expression d'au moins un motif d'acide nucléique contenant SEQ ID n° l, SEQ ID n° 2, SEQ ID n° 3 et SEQ ID n° 4 dans au moins une cellule.
PCT/MY2012/000011 2011-04-15 2012-01-30 Procédé de régulation de la teneur en lignine dans la plante hevea brasiliensis Ceased WO2012141568A1 (fr)

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MYPI2011001691A MY165254A (en) 2011-04-15 2011-04-15 A method of regulating lignin content in the plant of hevea brasiliensis
MYPI2011001691 2011-04-15

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Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2016131951A1 (fr) * 2015-02-20 2016-08-25 Repsol, S.A. Plantes de solanum tuberosum pour la production de biocarburant

Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6855870B2 (en) * 1999-02-10 2005-02-15 E. I. Du Pont De Nemours And Company Plant cinnamyl-alcohol dehydrogenase homologs

Patent Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6855870B2 (en) * 1999-02-10 2005-02-15 E. I. Du Pont De Nemours And Company Plant cinnamyl-alcohol dehydrogenase homologs

Non-Patent Citations (2)

* Cited by examiner, † Cited by third party
Title
CHABANNES ET AL.: "Strong decrease in lignin content without significant alteration of plant development is induced by simultaneous down-regulation of cinnamoyl CoA reductase (CCR) and cinnamyl alcohol dehydrogenase (CAD) in tobacco plants", THE PLANT JOURNAL, vol. 28, no. 3, 2001, pages 257 - 270, XP002533787, DOI: doi:10.1046/j.1365-313X.2001.01140.x *
DATABASE GENBANK 12 September 2006 (2006-09-12) *

Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2016131951A1 (fr) * 2015-02-20 2016-08-25 Repsol, S.A. Plantes de solanum tuberosum pour la production de biocarburant

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