WO2024254218A2 - Non-peptide small molecule fgf14:nav1.6 channel complex protein-protein interaction modulators - Google Patents

Non-peptide small molecule fgf14:nav1.6 channel complex protein-protein interaction modulators Download PDF

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WO2024254218A2
WO2024254218A2 PCT/US2024/032668 US2024032668W WO2024254218A2 WO 2024254218 A2 WO2024254218 A2 WO 2024254218A2 US 2024032668 W US2024032668 W US 2024032668W WO 2024254218 A2 WO2024254218 A2 WO 2024254218A2
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compound
alkyl
formula
ring
cycloalkyl
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WO2024254218A3 (en
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Jia Zhou
Fernanda LAEZZA
Pingyuan WANG
Nolan M. DVORAK
Paul A. WADSWORTH
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University of Texas System
University of Texas at Austin
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University of Texas at Austin
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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D401/00Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom
    • C07D401/14Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing three or more hetero rings
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D401/00Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom
    • C07D401/02Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings
    • C07D401/12Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings linked by a chain containing hetero atoms as chain links
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D471/00Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00
    • C07D471/02Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00 in which the condensed system contains two hetero rings
    • C07D471/04Ortho-condensed systems

Definitions

  • the field of the invention relates generally to modulators of FGF14:NAV1.6 channel complex protein-protein interaction. More specifically, the field of invention relates to non-peptide small molecule modulators of FGF14:NAV1.6 channel complex protein-protein interaction modulators.
  • One aspect of the invention pertains to a compound of Formula I or a pharmaceutically acceptable salt thereof, wherein:
  • R 1 is H, alkyl, alkoxy, halogen, cyano, amino, hydroxyl, NO2, CF 3 or -OCF 3 ;
  • A is an aryl ring or a heteroaryl ring (e.g., pyridine), wherein ring A is fused to the C4 and C5 of the 5 -membered N-heterocycle ring moiety of Formula I, e,g, as shown the compounds exemplified below;
  • R 2 is H, alkyl, alkoxy, halogen, -CO2R 10 , -CChMe or hydroxyl;
  • R 3 is H, alkyl, alkoxy, halogen or hydroxyl; or R 2 and R 3 together form a 3-6 membered cycloalkyl ring;
  • R 4 is H, alkyl, alkoxy, halogen, cyano, hydroxyl or NT 1 ! 2 ;
  • T 1 is H, alkyl
  • R 5 is H, alkyl, aryl, cycloalkyl (e.g., is a bridged 6-14-membered bicyclic cycloalkyl, with 1-3 carbon length “bridge”); or heteroaryl, wherein each ring is optionally substituted with one or more groups selected independently from: H, alkyl, cycloalkyl, alkenyl, aryl, heteroaryl, benzyl, alkoxy (e.g., OMe, 3-OMe), halogen, cyano (e.g., 3-CN), nitro, amino, amido (e.g., 3-amido hydroxyl, -COOR 8 (e.g., -COOMe), -CONHR 9 , CHF2, CF 3 or -OCF 3 , wherein alkyl is optionally substituted with one or more substituents chosen from: hydroxyl, cyan, amino, or halogen;
  • R 6 , and R 7 are independently chosen from H, alkyl, F, CHF2, CF 3 , etc., or R 6 and R 7 taken together form a 3-7 membered ring (e.g., cyclopropane);
  • R 8 is independently chosen from: H, alkyl, aryl, cycloalkyl, benzyl; and R 9 is independently chosen from: H, alkyl, aryl, cycloalkyl, benzyl, or substituted benzyl.
  • R 10 is alkyl (e.g., Cl-C6-alkyl), aryl, or alkylaryl.
  • Another aspect of the invention pertains to a compound of the Formula (II) or a pharmaceutically acceptable salt thereof, wherein:
  • R 4 is hydroxyl or NT 1 T 2 ; wherein T 1 is H or alkyl; and wherein T 2 is independently chosen from H, alkyl, cycloalkyl, benzyl, allyl, hydroxyl-alkyl; or T 1 and T 2 together form a 4-12 membered cycloalkyl ring or cycloheteralkyl ring, wherein the 4-12 membered cycloalkyl ring is optionally substituted with one or more groups selected independently from alkyl, cycloalkyl, alkenyl, aryl, heteroaryl, benzyl, alkoxy, halogen, cyan, nitro, amino, hydroxyl, CHF2, CF 3 or -OCF 3 ;
  • R 5 is an aryl ring or a cycloalkyl ring, wherein each ring is optionally substituted with one or more groups selected independently from: H, alkyl, cycloalkyl, alkenyl, aryl, heteroaryl, benzyl, alkoxy, halogen, cyano, nitro, amino, hydroxyl, -COOR 8 , -CONHR 9 , CHF2, CF 3 or -OCF 3 , wherein alkyl is optionally substituted with one or more chosen substituents chosen from: hydroxyl, cyano, amino, or halogen;
  • R 8 is independently chosen from: H, alkyl, aryl, cycloalkyl, or benzyl;
  • R 8 is independently chosen from: H, alkyl, aryl, cycloalkyl, benzyl, or substituted benzyl.
  • a further aspect of the invention pertains to a compound of Formula III, or a pharmaceutically acceptable salt thereof, wherein:
  • a yet further aspect of the invention pertains to compound of Formula IV, or a pharmaceutically acceptable salt thereof, wherein: wherein A, n, R 1 , and R 5 are defined as for the compound of Formula I.
  • a yet further aspect of the invention pertains to compound of Formula V, or a pharmaceutically acceptable salt thereof, wherein: wherein A, n, R 1 , R 5 , T 1 , and T 2 are defined as for the compound of Formula I.
  • a yet further aspect of the invention pertains to a compound of Formula VI, or a pharmaceutically acceptable salt thereof, wherein: wherein R 1 , R 4 , and R 5 are defined as for the compound of Formula I.
  • a yet further aspect of the invention pertains to a compound of Formula VII, or a pharmaceutically acceptable salt thereof, wherein: wherein R 1 and R 5 are defined as for the compound of Formula I.
  • a yet further aspect of the invention pertains to a compound of Formula VIII, or a pharmaceutically acceptable salt thereof, wherein: Formula VIII wherein R 1 , R 5 , T 1 , and T 2 are defined as for the compound of Formula I.
  • a yet further aspect of the invention pertains to a compound of Formula IX, or a pharmaceutically acceptable salt thereof, wherein:
  • R 1 , R 5 , T 1 , and T 2 are defined as for the compound of Formula I.
  • a yet further aspect of the invention pertains to a compound of Formula X, or a pharmaceutically acceptable salt thereof, wherein: wherein A is a heteroaryl ring, n, R 1 , R 4 and R 5 are defined as for the compound of Formula I.
  • a yet further aspect of the invention pertains to a method of treating a disease or condition in a patient comprising administering to the patient a therapeutically effective amount of a compound of disclosed herein or a pharmaceutically acceptable salt thereof.
  • treatment of said disease or condition involves modulating a FGF14:NAV1.6 channel complex protein-protein interaction.
  • FIG. 1 High throughput screening against the FGF14:Navl.6 complex.
  • FIG. 1A Summary of the LCA primary screen of -45,000 compounds showing hits based on a Z-score criterion.
  • FIG. IB Compounds are excluded based on the CellTiter Blue (CTB) cell viability fluorescence assay.
  • FIG. 1C Counter screen of non-toxic hits against the luciferase enzyme.
  • FIG. ID Dose-response of repurchased top hits after triplicate rescreen and prioritization based on drug-like properties.
  • CTB CellTiter Blue
  • FIG. 2A Selectivity and orthogonal validation of hits.
  • FIG. 2A The top 16 hits were screened (50 pM) against the FGF13-la:Navl.6, FGF13-lB:Navl.6, and FGF14:Navl.2 complexes, as well as the FGF14 dimer, using LCA. Compounds that modulated complex assembly by > 25% were excluded from further studies.
  • FIG. 2B The remaining 5 selective hits were then quantitatively assessed using SPR. Binding sensorgrams are shown for FGF14 (left) and Navi.6 (middle) and normalized steadystate saturation plots (right) reveal differences in compound: protein binding affinities.
  • FIG. 4A - FIG 4H Dose-responses of top compounds. Note that PW01028 displayed nanomolar potency in the LCA dose-response studies.
  • FIG. 6A - 6D Dose-responses of top compounds. Note that PW01028 displayed nanomolar potency in the LCA dose-response studies.
  • FIG. 7. Third generation of PW1028 analogs were synthesized and single concentration activity screening was tested.
  • FIG. 8 Dose-responses of top compound.
  • FIG. 9 The binding modes and molecular docking of compound PW01028.
  • FIG. 9A Docking of PW01028 (magenta) into the binding pocket of FGF14 in 3D view. Important residues are drawn in sticks. Hydrogen bonds are shown as dashed magenta lines, while TI ⁇ TI interactions are shown as dashed blue lines.
  • FIG. 9B Docking of compound PW01028 into the binding pocket of FGF14 in 2D view. Important residues and key interactions are presented in a similar fashion.
  • FIG. 10 Ligand binding studies of Compound PW01028.
  • FIG. 10A Ligand binding studies of Compound PW01028.
  • FIG. 11 Compound PW01028 inhibits shifts voltage-dependence of steadystate inactivation of Na+ currents and increases firing in MSN in an-FGF14 dependent manner.
  • FIG. 11 A Traces of Na peak currents (left column, asterisk) from cells treated with vehicle (0.1% DMSO; black) or compound PW01028 (1 pM; blue) elicited using the depicted voltage-clamp protocol (inset). The traces on the right represent a fraction of inactivated channels.
  • FIG. 11B Voltage-dependence of steady-state inactivation curves for the indicated experimental groups. Data were fitted using the Boltzmann equations.
  • FIG. 11C Comparison of V1/2 of steady-state inactivation between indicated groups.
  • FIG. 12 compound PW01028 inhibits shifts voltage-dependence of steady-state inactivation of Na+ currents and increases firing in MSN in an-FGF14 dependent manner.
  • FIG. 12A Traces of Na peak currents (left column, asterisk) from cells treated with vehicle (0.1% DMSO; black) or compound PW01028 (1 pM; blue) elicited using the depicted voltage-clamp protocol (inset).
  • the traces on the right represent a fraction of inactivated channels
  • FIG. 12B Voltage-dependence of steady-state inactivation curves for the indicated experimental groups. Data were fitted using the Boltzmann equations.
  • the term “about” refers to a ⁇ 10% variation from the nominal value. It is to be understood that such a variation is always included in any given value provided herein, whether or not it is specifically referred to.
  • pharmaceutically acceptable salt refers to those salts of the compounds of the present invention which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of patients without undue toxicity, and the like.
  • pharmaceutically acceptable salt may include acetate, hydrobromide, hydrochloride, sulfate, bisulfate, nitrate, acetate, oxalate, valerate, oleate, palmitate, stearate, laurate, borate, benzoate, lactate, phosphate, tosylate, citrate, maleate, fumarate, succinate, tartrate, naphthylate mesylate, glucoheptonate, lactobionate and laurylsulphonate salts, and the like. (See S. M. Barge et al., "Pharmaceutical Salts," J. Pharm. Sci., 66: 1-19 (1977), which is incorporated herein by
  • HBTU refers to 3-[Bis(dimethylamino)methyliumyl]-3H- benzotriazol-1 -oxide hexafluorophosphate (also known as 2-(lH-benzotriazol-l-yl)- 1 , 1 , 3 ,3 -tetramethyluronium hexafluorophosphate) .
  • HOBt refers the following structure, known as 1- hydroxybenzotriazole, (including hydrates and polymorphs, thereof):
  • DIPEA N,N-Diisopropylethylamine (also known as Htinig’s base, DIPEA, and ethyldiisopropylamine).
  • DCM di chloromethane
  • TFA trifluoroacetic acid
  • alkyl refers to both straight and branched chain radicals, and cyclic alkyl groups.
  • the alkyl group has 1-12 carbons.
  • the alkyl group has 1-7 carbons.
  • the alkyl group has 1-6 carbons.
  • the alkyl group has 1-4 carbons.
  • alkyl may include methyl, ethyl, propyl, isopropyl, butyl, t-butyl, isobutyl, pentyl, hexyl, isohexyl, heptyl, 4,4- dimethylpentyl, octyl, 2,2,4-trimethylpentyl, nonyl, decyl, undecyl, and dodecyl.
  • alkyl is generally used to refer to both unsubstituted alkyl groups and substituted alkyl groups; however, substituted alkyl groups are also specifically referred to herein by identifying the specific substituent(s) on the alkyl group.
  • halogenated alkyl or “haloalkyl” specifically refers to an alkyl group that is substituted with one or more halide, e.g., fluorine, chlorine, bromine, or iodine.
  • the term “monohaloalkyl” specifically refers to an alkyl group that is substituted with a single halide, e.g., fluorine, chlorine, bromine, or iodine.
  • polyhaloalkyl specifically refers to an alkyl group that is independently substituted with two or more halides, i.e. each halide substituent need not be the same halide as another halide substituent, nor do the multiple instances of a halide substituent need to be on the same carbon.
  • alkoxyalkyl specifically refers to an alkyl group that is substituted with one or more alkoxy groups, as described below.
  • aminoalkyl specifically refers to an alkyl group that is substituted with one or more amino groups.
  • hydroxyalkyl specifically refers to an alkyl group that is substituted with one or more hydroxy groups.
  • cycloalkyl refers to both unsubstituted and substituted cycloalkyl moieties
  • the substituted moieties can, in addition, be specifically identified herein; for example, a particular substituted cycloalkyl can be referred to as, e.g., an “alkylcycloalkyl.”
  • a substituted alkoxy can be specifically referred to as, e.g., a “halogenated alkoxy”
  • a particular substituted alkenyl can be, e.g., an “alkenylalcohol,” and the like.
  • the practice of using a general term, such as “cycloalkyl,” and a specific term, such as “alkylcycloalkyl,” is not meant to imply that the general term does not also include the specific term.
  • cycloalkyl includes bicyclic ring systems.
  • the bicyclic ring system may be in the form of a bridged, fused, or spiro form.
  • heteroalkyl by itself or in combination with another term, means, unless otherwise stated, a linear or branched chain having at least one carbon atom and at least one heteroatom selected from the group consisting of O, N, S, P, and Si.
  • the heteroatoms are selected from the group consisting of O, and N.
  • the heteroatom(s) may be placed at any interior position of the heteroalkyl group or at the position at which the alkyl group is attached to the remainder of the molecule. Up to two heteroatoms may be consecutive.
  • alkylene refers to straight and branched chain alkyl linking groups, i.e., an alkyl group that links one group to another group in a molecule.
  • alkylene may include -(CH2) n — where n is 2-8.
  • aryl means a polyunsaturated hydrocarbon substituent.
  • Aryl groups can be monocyclic or polycyclic (e.g., 2 to 3 rings that are fused together or linked covalently).
  • Non-limiting examples of aryl and heteroaryl rings are phenyl, naphthyl, pyranyl, pyrrolyl, pyrazinyl, pyrimidinyl, pyrazolyl, pyridinyl, furanyl, thiophenyl, thiazolyl, imidazolyl, isoxazolyl, and the like.
  • heteroaryl refers to groups having 5 to 14 ring atoms
  • heteroaryl groups include 1,2, 3 -triazole, 1,2,4-triazole, 5-amino 1,2,4-triazole, imidazole, oxazole, isoxazole, 1,2,3-oxadiazole, 1,2,4-oxadiazole, 3 -amino- 1,2,4- oxadiazole, 1,2,5-oxadiazole, 1,3,4-oxadiazole, pyridine, 2-aminopyridine, 4- aminopyridine, 2-aminoimidazoline, and 4-aminoimidazoline.
  • amino refers to an -NH2 group.
  • An “amido” group refers to an -CONH2 group.
  • An alkylamido group refers to an -CONHR group wherein R is as defined above.
  • a dialkylamido group refers to an - CONRR' group wherein R and R' are as defined above.
  • halogen or “halo” as used herein by itself or as part of another group refers to chlorine, bromine, fluorine or iodine.
  • hydroxy or “hydroxyl” as used herein by itself or as part of another group refers to an — OH group.
  • alkoxy group refers to an -O-alkyl group wherein “alkyl” is as defined above.
  • the alkyl group has 1-12 carbons.
  • the alkyl group has 1-7 carbons.
  • the alkyl group has 1-6 carbons.
  • the alkyl group has 1-4 carbons.
  • a “thio” group refers to an -SH group.
  • heterocycle or “heterocyclic ring”, as used herein except where noted, represents a stable 5- to 7-membered monocyclic-, or stable 7- to 11 -membered bicyclic heterocyclic ring system, any ring of which may be saturated or unsaturated, and which consists of carbon atoms and from one to three heteroatoms selected from the group consisting of N, O and S, and wherein the nitrogen and sulfur heteroatoms may optionally be oxidized, and the nitrogen heteroatom may optionally be quatemized, and including any bicyclic group in which any of the above-defined heterocyclic rings is fused to a benzene ring. Rings may contain one oxygen or sulfur, one to three nitrogen atoms, or one oxygen or sulfur combined with one or two nitrogen atoms.
  • the heterocyclic ring may be attached at any heteroatom or carbon atom
  • alkylamino refers to an amino group which is substituted with one alkyl group having from 1 to 6 carbon atoms.
  • dialkylamino refers to an amino group which is substituted with two alkyl groups, each having from 1 to 6 carbon atoms.
  • arylamine or “arylamino” as used herein by itself or as part of another group refers to an amino group which is substituted with an aryl group, as defined above.
  • arylalkyl denotes an alkyl group substituted with an aryl group, for example, Ph-CH 2 -, etc.
  • Optionally substituted groups may include one or more substituents independently selected from: halogen, nitro, cyano, hydroxy, amino, mercapto, formyl, carboxy, oxo, carbamoyl, alkyl, heteroalkyl, alkoxy, alkylthio, alkylamino, (alkyl)2amino, alkylsulfinyl, alkylsulfonyl, arylsulfonyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocyclyl, substituted or unsubstituted aryl, and substituted or unsubstituted heteroaryl.
  • the optional substituents may be further substituted with one or more substituents independently selected from: halogen, nitro, cyano, hydroxy, amino, mercapto, formyl, carboxy, carbamoyl ( — C(O)NR2), unsubstituted alkyl, unsubstituted heteroalkyl, alkoxy, alkylthio, alkylamino, (alkyl)2amino, alkylsulfinyl, alkyl sulfonyl, aryl sulfonyl, unsubstituted cycloalkyl, unsubstituted heterocyclyl, unsubstituted aryl, or unsubstituted heteroaryl.
  • substituents independently selected from: halogen, nitro, cyano, hydroxy, amino, mercapto, formyl, carboxy, carbamoyl ( — C(O)NR2), unsubstituted alkyl, unsubstit
  • Psychiatric disorders are neural circuitry alterations that lead to malfunctioning in high-order psychological domains.
  • new biological signatures that break free of traditional clinical classifications - spanning longitudinally across disorders in lieu of a single domain-disease view - are required.
  • PPI Protein-protein interactions
  • Their highly specific and flexible interfaces could make protein-channel interactions ideal targets for development of molecular probes.
  • MSN medium spiny neurons
  • NAc nucleus accumbens
  • FGF14 fibroblast growth factor 14
  • FGF14:Na v 1.6 complex assembly is critical to regulate the firing rate of NAc targets by controlling GABA release onto the ventral tegmental area and ventral pallidum via the dopaminergic receptors type 1 direct (DI) and type 2 indirect (D2) pathways, respectively.
  • probes that modulate MSN activity by fine-tuning FGF14:Na v 1.6 complex assembly would be valuable for interrogating the circuitry affected in many neuropsychiatric disorders.
  • Novel probes are needed that serve as precise in vivo measures of mechanisms hypothesized to underlie circuit deficits in mental disorders. Probes developed from molecular knowledge will provide the foundation for a paradigm shift in neuropsychopharmacology, leading to rigorous mechanistic hypotheses and future medications.
  • the nucleus accumbens located within the ventral striatum, serves as the central point of brain reward circuitry, controlling goal-directed behaviors and motivation for reward for natural stimuli and drug of abuse.
  • motivation is a fundamental dimension of behavior that cuts across diagnostic boundaries. Lack of motivation is a prevalent symptom in a number of neuropsychiatric illnesses such as schizophrenia, major depressive disorder, and neurodevelopmental disorders. It is therefore critical to develop adequate molecular tools to probe the circuits and the behaviors associated with motivation.
  • MSNs comprise 95% of the NAc neuronal population, are formed exclusively by GABAergic cells, and give rise to the only output of the NAc.
  • FGF14 was established as a functionally relevant component of the Navi.6 channel complex and a primary determinant of excitability in MSNs. Genetic silencing of either FGF 14 or Navi .6 affects MSN firing and plasticity in the NAc, and leads to changes in motivated behaviors associated with depression, anxiety, addiction, schizophrenia and psychosis, thereby demonstrating a link between the FGF14:Navl.6 complex and a full range affective disorders.
  • Fig. 1A shows results of the LCA primary screen of -45,000 compounds showing hits based on a Z-score criterion.
  • Fig. IB summarizes exclusion of compounds based on the CellTiter Blue (CTB) cell viability fluorescence assay.
  • Fig. 1C shows results of counter screen of non-toxic hits against the luciferase enzyme.
  • Fig. ID shows dose-response of repurchased top hits after triplicate rescreen and prioritization based on drug-like properties.
  • compound 7605086 displayed the most favorable drug-like properties for CNS drug development. To improve the potency and aqueous solubility of compound 7605086, substituents of the parental scaffold were replaced, producing probe compound
  • compound PW01028 modulated FGF14:Navl.6 complex formation with an IC50 of -250 nM.
  • surface plasmon resonance (SPR) showed that compound PW01028 displayed nanomolar binding affinity to FGF14 with evidence for ligand binding to the FGF14 R117 residue, a previously identified “hot-spot” at the FGF14:Navl.6 PPI interface.
  • compound PW01028 was shown to exacerbate FGF14-mediated regulatory effects on Navi.6 channel inactivation, causing a marked (+ 15 mV) depolarizing shift in the voltage-dependence of steady-state inactivation of the transient Na+ current.
  • the mechanism of action (MOA) of compound PW01028 was recapitulated in MSNs of the
  • Counter screening assays Cell viability assay.
  • the CellTiter-Blue® (CTB) Cell Viability Assay is a widely used, reliable fluorescent method for monitoring cell viability in HTS.
  • the assay is based on the ability of living cells to convert a redox dye (resazurin) into a fluorescent end-product (resorufin). Nonviable cells rapidly lose metabolic capacity and thus do not generate a fluorescent signal.
  • the assay is used in our pipeline as the first counter screening assay to eliminate toxic compounds. It is initiated by dispensing the proper amount of CTB reagent (i.e., 10 pL) per well in 384-well plates.
  • Fluorescence is then read after 16 hrs, and cut- offs are set at a Z-score of ⁇ -3 to identify and exclude toxic compounds (Fig. IB).
  • the assay was typically run at a single, maximal concentration of the test compound calculated from the IC50. Additional details about the use of this assay can be found in previous publications.
  • SPR Surface plasmon resonance
  • Analogues were then tested using SPR against FGF14 and Navl.6-C-terminal tail purified proteins, the gold standard for protein binding studies.
  • SPR experiments were used to quantitatively assess the binding affinity of analogues, serving as both a secondary bioactivity assay to determine accurate binding affinities for proteimligand interactions via KD, K on and K o ff, as well as to assess the compound’s ability to disrupt PPI.
  • the reliability of the model, goodness of fit, and reported kinetic and binding constants were validated by varying flow rates, immobilization densities, or different chips.
  • Statistical analysis was conducted by visually inspecting the goodness of fit of the data from the residuals. Additionally, c2 was used as a global measure for residual noise; standard deviation was used to report errors in measurements by repeating the experiment at least three times.
  • Figs. 2A and 2B summarize selectivity and orthogonal validation of hits from the screening assay.
  • the top 16 hits were screened (50 pM) against the FGF13-la:Navl.6, FGF13-lB:Navl.6, and FGF14:Navl.2 complexes, as well as the FGF14 dimer, using LCA. Compounds that modulated complex assembly by > 25% were excluded from further studies.
  • the remaining 5 selective hits were then quantitatively assessed using SPR. Binding sensorgrams are shown for FGF14 (left) and Navi.6 (middle) and normalized steady-state saturation plots (right) reveal differences in compound: protein binding affinities.
  • Confirmatory assays Automated and manual patch-clamp electrophysiology in heterologous cells. Patch-clamp electrophysiology is a rigorous, sophisticated confirmatory and orthogonal assay that serves to assess compound functional activity, mechanism of action, specificity, and selectivity toward various Nav isoforms. It is highly predictive of in vivo efficacy of compounds.
  • compounds are tested in cells stably expressing FGF 14 and Navi .6 or other relevant iFGF:Nav channel pairs. Initially screened with an automated planar patch-clamp system, compounds were tested with an 8-point dose-response in 384-well plates with a throughput of >2,000 data sets/week.
  • the top 16 hits were screened (50 pM) against the FGF13- la:Navl.6, FGF13-lB:Navl.6, and FGF14:Navl.2 complexes, as well as the FGF14 dimer, using LCA. Compounds that modulated complex assembly by > 25% were excluded from further studies.
  • FGF14 stands out among iFGFs as a potent, specific, and diverse modulator of Nav channels, especially Navi.6.
  • FGF14 suppressed or augmented Navl.6-encoded currents and channel availability, depending on its N-terminal spliced isoform.
  • genetic deletion of FGF14 caused suppression of Navl.6-mediated persistent and/or resurgent currents, while its overexpression increased Na + current peak amplitude and channel availability. This suggested a complex functional role for FGF14 in modulating native Na + currents that can be utilized to develop allosteric Navi.6 modulators as probes for excitability.
  • HPLC analysis conditions Waters pBondapak C18 (300 x 3.9 mm); flow rate 0.5 mL/min; UV detection at 270 and 254 nm; linear gradient from 10% acetonitrile in water to 100% acetonitrile in water in 20 min followed by 30 min of the last-named solvent (0.1% TFA was added into both acetonitrile and water). All biologically evaluated compounds were > 95% pure.
  • Reagents and conditions (a) tert-butyl 2-bromoacetate, K2CO3, DMF, rt, overnight, 96%. (b) TFA, rt, 4 h, quant, (c) m-toluidine, EDCI, DMAP, DMF, rt, overnight, 82%. (d) NaBH 4 , MeOH, 0 °C, 1 h, 79%.
  • Reagents and conditions (a) tert-butyl 2-bromoacetate, K2CO3, DMF, rt, overnight, 93%. (b) TFA, rt, 4 h, quant, (c) (1) m-toluidine, EDCI, DMAP, DMF, rt, overnight, 86%.
  • Reagents and conditions (a) (1) corresponding substituted aniline, EDCI, DMAP, DMF, rt, overnight; (2) NaBH4, MeOH, 0 °C, 30 min, 34%-82% for two steps.
  • Reagents and conditions (a) hexamethylenetetramine, H2O, AcOH, reflux, 6 h, (b) tert-butyl 2-bromoacetate, K2CO3, DMF, rt, overnight, 96%. (b) TFA, rt, 4 h, quant, (c) m-toluidine, EDCI, DMAP, DMF, rt, overnight, 82%. (d) NaBF , MeOH, 0 °C, 1 h, 79%.
  • Reagents and conditions (a) tert-butyl 2-bromoacetate, K2CO3, DMF, rt, overnight, 90%. (b) TFA, rt, 4 h, quant, (c) (1) m-toluidine, EDCI, DMAP, DMF, rt, overnight; (2) NaBH 4 , MeOH, 0 °C, 1 h, 79%. [0160] tert- Butyl 2-(5-cyano-3-formyl-lZ7-indol-l-yl)acetate (PW01010).
  • Reagents and conditions (a) methyl 2-bromopropanoate, K2CO3, DMF, rt, overnight, 94%. (b) LiOH, MeOH, rt, overnight, 92%. (c) (1) m-toluidine, EDCI, DMAP, DMF, rt, overnight; (2) NaBH 4 , MeOH, 0 °C, 1 h, 60%.
  • R 1 is H, alkyl, alkoxy, halogen, cyano, amino, hydroxyl, NO2, CF 3 or -OCF 3 ;
  • A is an aryl ring or a heteroaryl ring (e.g., pyridine), wherein ring A is fused to the C4 and C5 of the 5 -membered N-heterocycle ring moiety of Formula I, e,g, as shown the compounds exemplified below;
  • R 2 is H, alkyl, alkoxy, halogen, -CO2R 10 , -CChMe or hydroxyl;
  • R 3 is H, alkyl, alkoxy, halogen or hydroxyl; or R 2 and R 3 together form a 3-6 membered cycloalkyl ring;
  • R 4 is H, alkyl, alkoxy, halogen, cyano, hydroxyl or NT 1 ! 2 ;
  • T 1 is H, alkyl
  • R 5 is H, alkyl, aryl, cycloalkyl (e.g., is a bridged 6-14-membered bicyclic cycloalkyl, with 1-3 carbon length “bridge”); or heteroaryl, wherein each ring is optionally substituted with one or more groups selected independently from: H, alkyl, cycloalkyl, alkenyl, aryl, heteroaryl, benzyl, alkoxy (e.g., OMe, 3-OMe), halogen, cyano (e.g., 3-CN), nitro, amino, amido (e.g., 3-amido hydroxyl, -COOR 8 (e.g., -COOMe), -CONHR 9 , CHF2, CF 3 or -OCF 3 , wherein alkyl is optionally substituted with one or more substituents chosen from: hydroxyl, cyan, amino, or halogen; R 6 , and R 7 are independently chosen from H, alkyl, F
  • R 8 is independently chosen from: H, alkyl, aryl, cycloalkyl, benzyl; and
  • R 9 is independently chosen from: H, alkyl, aryl, cycloalkyl, benzyl, or substituted benzyl.
  • R 10 is alkyl (e.g., Cl-C6-alkyl), aryl, or alkylaryl.
  • R 4 is hydroxyl or NT 1 ! 2 ; wherein T 1 is H or alkyl; and wherein T 2 is independently chosen from H, alkyl, cycloalkyl, benzyl, allyl, hydroxyl-alkyl; or T 1 and T 2 together form a 4-12 membered cycloalkyl ring or cycloheteralkyl ring, wherein the 4-12 membered cycloalkyl ring is optionally substituted with one or more groups selected independently from alkyl, cycloalkyl, alkenyl, aryl, heteroaryl, benzyl, alkoxy, halogen, cyan, nitro, amino, hydroxyl, CHF2, CF 3 or -OCF 3 ;
  • R 5 is an aryl ring or a cycloalkyl ring, wherein each ring is optionally substituted with one or more groups selected independently from: H, alkyl, cycloalkyl, alkenyl, aryl, heteroaryl, benzyl, alkoxy, halogen, cyano, nitro, amino, hydroxyl, -COOR 8 , -CONHR 9 , CHF2, CF 3 or -OCF 3 , wherein alkyl is optionally substituted with one or more chosen substituents chosen from: hydroxyl, cyano, amino, or halogen;
  • R 8 is independently chosen from: H, alkyl, aryl, cycloalkyl, or benzyl;
  • R 8 is independently chosen from: H, alkyl, aryl, cycloalkyl, benzyl, or substituted benzyl.
  • R 4 is hydroxyl.
  • R 4 is NT X T 2 .
  • T 1 is H.
  • R 5 is an aryl ring.
  • aryl ring is substituted with one or more substituents selected independently from: H, alkyl, benzyl, alkoxy, halogen, cyano, nitro, amino, hydroxyl, -COOR 8 , -CONHR 9 , CHF2, CF 3 or -OCF 3 , wherein alkyl is optionally substituted with one or more chosen substituents chosen from: hydroxyl, cyano, amino, or halogen;
  • R 8 is H, alkyl; and R 9 is independently chosen from: H, alkyl, aryl, cycloalkyl, benzyl, or substituted benzyl.
  • a method of treating a disease or condition in a patient comprising administering to the patient a therapeutically effective amount of a compound of any of the preceding embodiments or a pharmaceutically acceptable salt thereof.

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Abstract

The present invention relates to novel small molecule FGF14:NAV1.6 channel complex protein-protein interaction modulators of the general structure according to Formula (I), and the preparation and use thereof:

Description

NON-PEPTIDE SMALL MOLECULE FGF14:NAV1.6 CHANNEL COMPLEX
PROTEIN-PROTEIN INTERACTION MODULATORS by
Jia Zhou Fernanda Laezza Pingyuan Wang Nolan M. Dvorak Paul A. Wadsworth
CROSS REFERENCE TO RELATED APPLICATIONS
[0001] This application claims priority to U.S. Application No. 63/506,356, filed on
June 05, 2023, the contents of which are hereby incorporated by reference in its entirety.
[0002] STATEMENT OF FEDERALLY SPONSORED RESEARCH AND DEVELOPMENT
[0003] This invention was made with government support under NH4/NIMH Grant No. R01MH111107 awarded by the National Institutes of Health (NIH) and National Institute of Mental Health (NIMH). The government has certain rights in the invention.
[0004] FIELD OF THE INVENTION
[0005] The field of the invention relates generally to modulators of FGF14:NAV1.6 channel complex protein-protein interaction. More specifically, the field of invention relates to non-peptide small molecule modulators of FGF14:NAV1.6 channel complex protein-protein interaction modulators.
[0006] BACKGROUND
[0007] This background information is provided for the purpose of making information believed by the applicant to be of possible relevance to the present invention. No admission is necessarily intended, nor should it be construed, that any of the information disclosed herein constitutes prior art against the present invention.
[0008] DESCRIPTION
[0009] One aspect of the invention pertains to a compound of Formula I or a pharmaceutically acceptable salt thereof, wherein:
Figure imgf000003_0001
R1 is H, alkyl, alkoxy, halogen, cyano, amino, hydroxyl, NO2, CF3 or -OCF3;
A is an aryl ring or a heteroaryl ring (e.g., pyridine), wherein ring A is fused to the C4 and C5 of the 5 -membered N-heterocycle ring moiety of Formula I, e,g, as shown the compounds exemplified below;
R2 is H, alkyl, alkoxy, halogen, -CO2R10, -CChMe or hydroxyl;
R3 is H, alkyl, alkoxy, halogen or hydroxyl; or R2 and R3 together form a 3-6 membered cycloalkyl ring;
R4 is H, alkyl, alkoxy, halogen, cyano, hydroxyl or NT1!2;
T1 is H, alkyl;
T2 is independently chosen from: H, alkyl, cycloalkyl, benzyl, allyl, hydroxyl-alkyl; or T1 and T2 together form a 4-12 membered cycloalkyl ring or cycloheteroalkyl ring, wherein the 4-12 membered cycloalkyl ring or cycloheteroalkyl ring is optionally substituted with one or more groups selected independently from alkyl, cycloalkyl, alkenyl, aryl, heteroaryl, benzyl, alkoxy, halogen, cyan, nitro, amino, hydroxyl, CHF2, CF3 or -OCF3; n = 0, 1, 2, 3, or 4;
R5 is H, alkyl, aryl, cycloalkyl (e.g., is a bridged 6-14-membered bicyclic cycloalkyl, with 1-3 carbon length “bridge”); or heteroaryl, wherein each ring is optionally substituted with one or more groups selected independently from: H, alkyl, cycloalkyl, alkenyl, aryl, heteroaryl, benzyl, alkoxy (e.g., OMe, 3-OMe), halogen, cyano (e.g., 3-CN), nitro, amino, amido (e.g., 3-amido hydroxyl, -COOR8 (e.g., -COOMe), -CONHR9, CHF2, CF3 or -OCF3, wherein alkyl is optionally substituted with one or more substituents chosen from: hydroxyl, cyan, amino, or halogen;
R6, and R7 are independently chosen from H, alkyl, F, CHF2, CF3, etc., or R6 and R7 taken together form a 3-7 membered ring (e.g., cyclopropane);
R8 is independently chosen from: H, alkyl, aryl, cycloalkyl, benzyl; and R9 is independently chosen from: H, alkyl, aryl, cycloalkyl, benzyl, or substituted benzyl.
R10 is alkyl (e.g., Cl-C6-alkyl), aryl, or alkylaryl.
[0010] Another aspect of the invention pertains to a compound of the Formula (II) or a pharmaceutically acceptable salt thereof, wherein:
Figure imgf000004_0001
R4 is hydroxyl or NT1T2; wherein T1 is H or alkyl; and wherein T2 is independently chosen from H, alkyl, cycloalkyl, benzyl, allyl, hydroxyl-alkyl; or T1 and T2 together form a 4-12 membered cycloalkyl ring or cycloheteralkyl ring, wherein the 4-12 membered cycloalkyl ring is optionally substituted with one or more groups selected independently from alkyl, cycloalkyl, alkenyl, aryl, heteroaryl, benzyl, alkoxy, halogen, cyan, nitro, amino, hydroxyl, CHF2, CF3 or -OCF3;
R5 is an aryl ring or a cycloalkyl ring, wherein each ring is optionally substituted with one or more groups selected independently from: H, alkyl, cycloalkyl, alkenyl, aryl, heteroaryl, benzyl, alkoxy, halogen, cyano, nitro, amino, hydroxyl, -COOR8, -CONHR9, CHF2, CF3 or -OCF3, wherein alkyl is optionally substituted with one or more chosen substituents chosen from: hydroxyl, cyano, amino, or halogen;
R8 is independently chosen from: H, alkyl, aryl, cycloalkyl, or benzyl; and
R8 is independently chosen from: H, alkyl, aryl, cycloalkyl, benzyl, or substituted benzyl.
[0011] A further aspect of the invention pertains to a compound of Formula III, or a pharmaceutically acceptable salt thereof, wherein:
Figure imgf000005_0001
wherein A, n, R1, R4, and R5 are as defined for the compound of Formula I.
A yet further aspect of the invention pertains to compound of Formula IV, or a pharmaceutically acceptable salt thereof, wherein:
Figure imgf000005_0002
wherein A, n, R1, and R5 are defined as for the compound of Formula I.
A yet further aspect of the invention pertains to compound of Formula V, or a pharmaceutically acceptable salt thereof, wherein:
Figure imgf000005_0003
wherein A, n, R1, R5, T1, and T2 are defined as for the compound of Formula I. A yet further aspect of the invention pertains to a compound of Formula VI, or a pharmaceutically acceptable salt thereof, wherein:
Figure imgf000006_0002
wherein R1, R4, and R5 are defined as for the compound of Formula I.
A yet further aspect of the invention pertains to a compound of Formula VII, or a pharmaceutically acceptable salt thereof, wherein:
Figure imgf000006_0003
wherein R1 and R5are defined as for the compound of Formula I.
A yet further aspect of the invention pertains to a compound of Formula VIII, or a pharmaceutically acceptable salt thereof, wherein:
Figure imgf000006_0001
Formula VIII wherein R1, R5, T1, and T2 are defined as for the compound of Formula I.
A yet further aspect of the invention pertains to a compound of Formula IX, or a pharmaceutically acceptable salt thereof, wherein:
Figure imgf000007_0001
wherein R1, R5, T1, and T2 are defined as for the compound of Formula I.
A yet further aspect of the invention pertains to a compound of Formula X, or a pharmaceutically acceptable salt thereof, wherein:
Figure imgf000007_0002
wherein A is a heteroaryl ring, n, R1, R4 and R5 are defined as for the compound of Formula I.
A yet further aspect of the invention pertains to a method of treating a disease or condition in a patient comprising administering to the patient a therapeutically effective amount of a compound of disclosed herein or a pharmaceutically acceptable salt thereof. In some embodiments, treatment of said disease or condition involves modulating a FGF14:NAV1.6 channel complex protein-protein interaction.
[0012] All publications mentioned herein are incorporated by reference to the extent they support the present invention.
[0013] BRIEF DESCRIPTION OF FIGURES
[0014] FIG. 1. High throughput screening against the FGF14:Navl.6 complex. FIG. 1A. Summary of the LCA primary screen of -45,000 compounds showing hits based on a Z-score criterion. FIG. IB. Compounds are excluded based on the CellTiter Blue (CTB) cell viability fluorescence assay. FIG. 1C. Counter screen of non-toxic hits against the luciferase enzyme. FIG. ID. Dose-response of repurchased top hits after triplicate rescreen and prioritization based on drug-like properties.
[0015] FIG. 2. Selectivity and orthogonal validation of hits. FIG. 2A. The top 16 hits were screened (50 pM) against the FGF13-la:Navl.6, FGF13-lB:Navl.6, and FGF14:Navl.2 complexes, as well as the FGF14 dimer, using LCA. Compounds that modulated complex assembly by > 25% were excluded from further studies. FIG. 2B. The remaining 5 selective hits were then quantitatively assessed using SPR. Binding sensorgrams are shown for FGF14 (left) and Navi.6 (middle) and normalized steadystate saturation plots (right) reveal differences in compound: protein binding affinities. Kinetic analysis of each ligand/analyte interaction was obtained by fitting the response data to the simplest Langmuir 1 : 1 interaction model (KD = koff/kon). The KD of compound 7605 was 2.9 mM for FGF14 and 13.6 mM for Navi.6.
[0016] FIG. 3. Screening of 50 analogs of 7605086 using the LCA. Single concentration screening of the first batch of 7605086 analogs (34 compounds total; concentration = 5 uM) using the LCA.
[0017] FIG. 4A - FIG 4H. Dose-responses of top compounds. Note that PW01028 displayed nanomolar potency in the LCA dose-response studies.
[0018] FIG. 5. Screening of an additional batch of analogs using the LCA. Single concentration screening of the first batch of analogs (16 compounds total; concentration = 5 pM) using the LCA.
[0019] FIG. 6A - 6D. Dose-responses of top compounds. Note that PW01028 displayed nanomolar potency in the LCA dose-response studies.
[0020] FIG. 7. Third generation of PW1028 analogs were synthesized and single concentration activity screening was tested.
[0021] FIG. 8. Dose-responses of top compound.
[0022] FIG. 9. The binding modes and molecular docking of compound PW01028. FIG. 9A. Docking of PW01028 (magenta) into the binding pocket of FGF14 in 3D view. Important residues are drawn in sticks. Hydrogen bonds are shown as dashed magenta lines, while TI~ TI interactions are shown as dashed blue lines. FIG. 9B. Docking of compound PW01028 into the binding pocket of FGF14 in 2D view. Important residues and key interactions are presented in a similar fashion. [0023] FIG. 10. Ligand binding studies of Compound PW01028. FIG. 10A. Doseresponse curve of compound PW01028 as determined via in-cell testing using the LCA of Navi.6 WT complexed with either FGF14WT (10A) or vs FGF14R117A (10B) (10B, 10C) Binding of compound PW01028 to FGF14 (10C, 10D), FGF14 R117A (10E) or the CTD of Nav1.6 (10F).
[0024] FIG. 11. Compound PW01028 inhibits shifts voltage-dependence of steadystate inactivation of Na+ currents and increases firing in MSN in an-FGF14 dependent manner. FIG. 11 A. Traces of Na peak currents (left column, asterisk) from cells treated with vehicle (0.1% DMSO; black) or compound PW01028 (1 pM; blue) elicited using the depicted voltage-clamp protocol (inset). The traces on the right represent a fraction of inactivated channels. FIG. 11B. Voltage-dependence of steady-state inactivation curves for the indicated experimental groups. Data were fitted using the Boltzmann equations. FIG. 11C. Comparison of V1/2 of steady-state inactivation between indicated groups. Data are mean ± SEM (n = 6-10 cells/group). Significance assessed using Student’s t-test. (11D -11F). Effect of compound PW01028 on MSN firing from Fgfl4+/+ mice and relative quantification. (n=19-20/group; ****, p<0.0001; Student’s t-test). (FIG. 11G - 111). Lack of effect of compound PW01028 in MSN firing from Fgfl4-/- mice and relative quantification (n=7-8/group; p>0.05; Student’s t-test. Data are mean + SEM.
[0025] FIG. 12. compound PW01028 inhibits shifts voltage-dependence of steady-state inactivation of Na+ currents and increases firing in MSN in an-FGF14 dependent manner. (FIG. 12A) Traces of Na peak currents (left column, asterisk) from cells treated with vehicle (0.1% DMSO; black) or compound PW01028 (1 pM; blue) elicited using the depicted voltage-clamp protocol (inset). The traces on the right represent a fraction of inactivated channels (FIG. 12B) Voltage-dependence of steady-state inactivation curves for the indicated experimental groups. Data were fitted using the Boltzmann equations. (FIG. 12C) Comparison of V1/2 of steady-state inactivation between indicated groups. Data are mean ± SEM (n = 6-10 cells/group). Significance assessed using Student’s t-test. (FIG. 12D - 12F). Effect of compound PW01028 on MSN firing from Fgfl4+/+ mice and relative quantification. (n=19-20/group; ****, p<0.0001; Student’s t-test). (FIG. 12G - 121). Lack of effect of compound PW01028 in MSN firing from Fgfl4-/-mice and relative quantification (n=7-8/group; p>0.05; Student’s t-test. Data are mean + SEM. [0026] 1.0 Definitions
[0027] For the purposes of promoting an understanding of the principles of the invention, reference will now be made to certain embodiments and specific language will be used to describe the same. It will nevertheless be understood that no limitation of the scope of the invention is thereby intended, and alterations and modifications in the illustrated invention, and further applications of the principles of the invention as illustrated therein are herein contemplated as would normally occur to one skilled in the art to which the invention relates.
[0028] Unless defined otherwise, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention pertains.
[0029] For the purpose of interpreting this specification, the following definitions will apply and whenever appropriate, terms used in the singular will also include the plural and vice versa. In the event that any definition set forth below conflicts with the usage of that word in any other document, including any document incorporated herein by reference, the definition set forth below shall always control for purposes of interpreting this specification and its associated claims unless a contrary meaning is clearly intended (for example in the document where the term is originally used).
[0030] The use of “or” means “and/or” unless stated otherwise.
[0031] The use of “a” herein means “one or more” unless stated otherwise or where the use of “one or more” is clearly inappropriate.
[0032] The use of “comprise,” “comprises,” “comprising,” “include,” “includes,” and “including” are interchangeable and not intended to be limiting. Furthermore, where the description of one or more embodiments uses the term “comprising,” those skilled in the art would understand that, in some specific instances, the embodiment or embodiments can be alternatively described using the language “consisting essentially of’ and/or “consisting of.”
[0033] As used herein, the term “about” refers to a ±10% variation from the nominal value. It is to be understood that such a variation is always included in any given value provided herein, whether or not it is specifically referred to.
[0034] The term "pharmaceutically acceptable salt" refers to those salts of the compounds of the present invention which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of patients without undue toxicity, and the like. As used herein, the term "pharmaceutically acceptable salt" may include acetate, hydrobromide, hydrochloride, sulfate, bisulfate, nitrate, acetate, oxalate, valerate, oleate, palmitate, stearate, laurate, borate, benzoate, lactate, phosphate, tosylate, citrate, maleate, fumarate, succinate, tartrate, naphthylate mesylate, glucoheptonate, lactobionate and laurylsulphonate salts, and the like. (See S. M. Barge et al., "Pharmaceutical Salts," J. Pharm. Sci., 66: 1-19 (1977), which is incorporated herein by reference in its entirety, for further examples of pharmaceutically acceptable salt).
[0035] The term “HBTU” refers to 3-[Bis(dimethylamino)methyliumyl]-3H- benzotriazol-1 -oxide hexafluorophosphate (also known as 2-(lH-benzotriazol-l-yl)- 1 , 1 , 3 ,3 -tetramethyluronium hexafluorophosphate) .
[0036] The term “HOBt” refers the following structure, known as 1- hydroxybenzotriazole, (including hydrates and polymorphs, thereof):
Figure imgf000011_0001
[0037] The term “DIEA” refers to N,N-Diisopropylethylamine (also known as Htinig’s base, DIPEA, and ethyldiisopropylamine).
[0038] The term “DCM” refers to di chloromethane (also known as methylene chloride).
[0039] The term “TFA” refers to trifluoroacetic acid.
[0040] The term “rt” refers to room temperature.
[0041] The term “alkyl” as used herein by itself or as part of another group refers to both straight and branched chain radicals, and cyclic alkyl groups. In one embodiment, the alkyl group has 1-12 carbons. In another embodiment, the alkyl group has 1-7 carbons. In another embodiment, the alkyl group has 1-6 carbons. In another embodiment, the alkyl group has 1-4 carbons. The term “alkyl” may include methyl, ethyl, propyl, isopropyl, butyl, t-butyl, isobutyl, pentyl, hexyl, isohexyl, heptyl, 4,4- dimethylpentyl, octyl, 2,2,4-trimethylpentyl, nonyl, decyl, undecyl, and dodecyl.
Throughout the specification “alkyl” is generally used to refer to both unsubstituted alkyl groups and substituted alkyl groups; however, substituted alkyl groups are also specifically referred to herein by identifying the specific substituent(s) on the alkyl group. For example, the term “halogenated alkyl” or “haloalkyl” specifically refers to an alkyl group that is substituted with one or more halide, e.g., fluorine, chlorine, bromine, or iodine. Alternatively, the term “monohaloalkyl” specifically refers to an alkyl group that is substituted with a single halide, e.g., fluorine, chlorine, bromine, or iodine. The term “polyhaloalkyl” specifically refers to an alkyl group that is independently substituted with two or more halides, i.e. each halide substituent need not be the same halide as another halide substituent, nor do the multiple instances of a halide substituent need to be on the same carbon. The term “alkoxyalkyl” specifically refers to an alkyl group that is substituted with one or more alkoxy groups, as described below. The term “aminoalkyl” specifically refers to an alkyl group that is substituted with one or more amino groups. The term “hydroxyalkyl” specifically refers to an alkyl group that is substituted with one or more hydroxy groups. When “alkyl” is used in one instance and a specific term such as “hydroxyalkyl” is used in another, it is not meant to imply that the term “alkyl” does not also refer to specific terms such as “hydroxyalkyl” and the like.
This practice is also used for other groups described herein. That is, while a term such as “cycloalkyl” refers to both unsubstituted and substituted cycloalkyl moieties, the substituted moieties can, in addition, be specifically identified herein; for example, a particular substituted cycloalkyl can be referred to as, e.g., an “alkylcycloalkyl.” Similarly, a substituted alkoxy can be specifically referred to as, e.g., a “halogenated alkoxy,” a particular substituted alkenyl can be, e.g., an “alkenylalcohol,” and the like. Again, the practice of using a general term, such as “cycloalkyl,” and a specific term, such as “alkylcycloalkyl,” is not meant to imply that the general term does not also include the specific term.
[0042] In certain embodiments, the term “cycloalkyl” includes bicyclic ring systems. The bicyclic ring system may be in the form of a bridged, fused, or spiro form.
[0043] The term “heteroalkyl,” by itself or in combination with another term, means, unless otherwise stated, a linear or branched chain having at least one carbon atom and at least one heteroatom selected from the group consisting of O, N, S, P, and Si. In certain embodiments, the heteroatoms are selected from the group consisting of O, and N. The heteroatom(s) may be placed at any interior position of the heteroalkyl group or at the position at which the alkyl group is attached to the remainder of the molecule. Up to two heteroatoms may be consecutive. [0044] The term “alkylene” as used herein refers to straight and branched chain alkyl linking groups, i.e., an alkyl group that links one group to another group in a molecule. In some embodiments, the term “alkylene” may include -(CH2)n — where n is 2-8.
[0045] The term “aryl” means a polyunsaturated hydrocarbon substituent. Aryl groups can be monocyclic or polycyclic (e.g., 2 to 3 rings that are fused together or linked covalently). Non-limiting examples of aryl and heteroaryl rings are phenyl, naphthyl, pyranyl, pyrrolyl, pyrazinyl, pyrimidinyl, pyrazolyl, pyridinyl, furanyl, thiophenyl, thiazolyl, imidazolyl, isoxazolyl, and the like.
[0046] The term “heteroaryl” as used herein refers to groups having 5 to 14 ring atoms;
6, 10 or 14 7π -electrons shared in a cyclic array; and containing carbon atoms and 1, 2 or 3 oxygen, nitrogen or sulfur heteroatoms. A heteroaryl group can be attached to the remainder of the molecule through a carbon or heteroatom. Especially preferred heteroaryl groups include 1,2, 3 -triazole, 1,2,4-triazole, 5-amino 1,2,4-triazole, imidazole, oxazole, isoxazole, 1,2,3-oxadiazole, 1,2,4-oxadiazole, 3 -amino- 1,2,4- oxadiazole, 1,2,5-oxadiazole, 1,3,4-oxadiazole, pyridine, 2-aminopyridine, 4- aminopyridine, 2-aminoimidazoline, and 4-aminoimidazoline.
[0047] An “amino” group refers to an -NH2 group.
[0048] An “amido” group refers to an -CONH2 group. An alkylamido group refers to an -CONHR group wherein R is as defined above. A dialkylamido group refers to an - CONRR' group wherein R and R' are as defined above.
[0049] The term “halogen” or “halo” as used herein by itself or as part of another group refers to chlorine, bromine, fluorine or iodine.
[0050] The term “hydroxy” or “hydroxyl” as used herein by itself or as part of another group refers to an — OH group.
[0051] An “alkoxy” group refers to an -O-alkyl group wherein “alkyl” is as defined above. In one embodiment, the alkyl group has 1-12 carbons. In another embodiment, the alkyl group has 1-7 carbons. In a further embodiment, the alkyl group has 1-6 carbons. In another embodiment, the alkyl group has 1-4 carbons.
[0052] A “thio” group refers to an -SH group.
[0053] An “alkylthio” group refers to an -SR group wherein R is alkyl as defined above. [0054] The term “heterocycle” or “heterocyclic ring”, as used herein except where noted, represents a stable 5- to 7-membered monocyclic-, or stable 7- to 11 -membered bicyclic heterocyclic ring system, any ring of which may be saturated or unsaturated, and which consists of carbon atoms and from one to three heteroatoms selected from the group consisting of N, O and S, and wherein the nitrogen and sulfur heteroatoms may optionally be oxidized, and the nitrogen heteroatom may optionally be quatemized, and including any bicyclic group in which any of the above-defined heterocyclic rings is fused to a benzene ring. Rings may contain one oxygen or sulfur, one to three nitrogen atoms, or one oxygen or sulfur combined with one or two nitrogen atoms. The heterocyclic ring may be attached at any heteroatom or carbon atom that results in the creation of a stable structure.
[0055] The term “alkylamino” as used herein by itself or as part of another group refers to an amino group which is substituted with one alkyl group having from 1 to 6 carbon atoms. The term “dialkylamino” as used herein by itself or as part of another group refers to an amino group which is substituted with two alkyl groups, each having from 1 to 6 carbon atoms.
[0056] The term “arylamine” or “arylamino” as used herein by itself or as part of another group refers to an amino group which is substituted with an aryl group, as defined above.
[0057] As used herein, the term “arylalkyl” denotes an alkyl group substituted with an aryl group, for example, Ph-CH2-, etc.
[0058] Various groups are described herein as substituted or unsubstituted (i.e., optionally substituted). Optionally substituted groups may include one or more substituents independently selected from: halogen, nitro, cyano, hydroxy, amino, mercapto, formyl, carboxy, oxo, carbamoyl, alkyl, heteroalkyl, alkoxy, alkylthio, alkylamino, (alkyl)2amino, alkylsulfinyl, alkylsulfonyl, arylsulfonyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocyclyl, substituted or unsubstituted aryl, and substituted or unsubstituted heteroaryl. In certain aspects the optional substituents may be further substituted with one or more substituents independently selected from: halogen, nitro, cyano, hydroxy, amino, mercapto, formyl, carboxy, carbamoyl ( — C(O)NR2), unsubstituted alkyl, unsubstituted heteroalkyl, alkoxy, alkylthio, alkylamino, (alkyl)2amino, alkylsulfinyl, alkyl sulfonyl, aryl sulfonyl, unsubstituted cycloalkyl, unsubstituted heterocyclyl, unsubstituted aryl, or unsubstituted heteroaryl. Exemplary optional substituents include, but are not limited to: — OH, oxo (=0), — Cl, — F, Br, Ci-4alkyl, phenyl, benzyl, — NH2, — NH(Ci-4alkyl), — N(C1-4alkyl)2, — N02, — S(C1-4alkyl), — SO2(C1-4alkyl), — CO2(C1-4alkyl), and — O(C1-4alkyl).
[0059] It is to be understood that both the foregoing descriptions are exemplary, and thus do not restrict the scope of the invention.
[0060] Psychiatric disorders are neural circuitry alterations that lead to malfunctioning in high-order psychological domains. To parse out disease complexity and advance treatment, new biological signatures that break free of traditional clinical classifications - spanning longitudinally across disorders in lieu of a single domain-disease view - are required. Within this research framework lies the need for new molecular tools to interrogate specific neural circuits. Protein-protein interactions (PPI) within ion channel complexes, fine-tune neuronal excitability and are emerging as links to the biology of psychiatric disorders and addiction. Their highly specific and flexible interfaces could make protein-channel interactions ideal targets for development of molecular probes. This would provide the neuropharmacology community with the tools to interrogate circuit biology with unprecedented precision and lay the foundation for transformative new therapeutic strategies. In medium spiny neurons (MSN), the principal cell type of the nucleus accumbens (NAc), the PPI between the voltage-gated Na+ (Nav) channel isoform 1.6 (Nav1.6) and fibroblast growth factor 14 (FGF14) is crucial to action potential firing. Given that MSNs provide the sole output of the NAc, FGF14:Nav1.6 complex assembly is critical to regulate the firing rate of NAc targets by controlling GABA release onto the ventral tegmental area and ventral pallidum via the dopaminergic receptors type 1 direct (DI) and type 2 indirect (D2) pathways, respectively. As these pathways regulate motivation, anhedonia, and reward-related behaviors, probes that modulate MSN activity by fine-tuning FGF14:Nav1.6 complex assembly would be valuable for interrogating the circuitry affected in many neuropsychiatric disorders.
[0061] Novel probes are needed that serve as precise in vivo measures of mechanisms hypothesized to underlie circuit deficits in mental disorders. Probes developed from molecular knowledge will provide the foundation for a paradigm shift in neuropsychopharmacology, leading to rigorous mechanistic hypotheses and future medications.
[0062] The nucleus accumbens (NAc), located within the ventral striatum, serves as the central point of brain reward circuitry, controlling goal-directed behaviors and motivation for reward for natural stimuli and drug of abuse. Within the NIMH Research Domain Criteria (RDoC), motivation is a fundamental dimension of behavior that cuts across diagnostic boundaries. Lack of motivation is a prevalent symptom in a number of neuropsychiatric illnesses such as schizophrenia, major depressive disorder, and neurodevelopmental disorders. It is therefore critical to develop adequate molecular tools to probe the circuits and the behaviors associated with motivation. MSNs comprise 95% of the NAc neuronal population, are formed exclusively by GABAergic cells, and give rise to the only output of the NAc. Recent studies in rodent models have mechanistically linked MSN activity with reward-expectation and motivation for reward showing that optogenetic inhibition of MSN firing disrupts food-incentive goal- directed behaviors. Thus, it is hypothesized that probes targeting the FGF14:Nav1.6 complex will provide novel tools to interrogate molecular, cellular, and circuital mechanisms underlying motivated behaviors with a broad impact for psychiatry. The fine-tuned regulation of neuronal firing relies on the integrity of ion channel macromolecular complexes. These complexes are formed by a nexus of tightly regulated PPI that define the channel functional phenotype. In previous studies, FGF14 was established as a functionally relevant component of the Navi.6 channel complex and a primary determinant of excitability in MSNs. Genetic silencing of either FGF 14 or Navi .6 affects MSN firing and plasticity in the NAc, and leads to changes in motivated behaviors associated with depression, anxiety, addiction, schizophrenia and psychosis, thereby demonstrating a link between the FGF14:Navl.6 complex and a full range affective disorders.
[0063] Through binding to the intracellular C-terminal tail of Navi.6, FGF14 controls Navi.6 gating and inactivation, and axonal targeting in neurons, properties conferred by a high degree of structural and functional specificity of the PPI interface. Evidence for druggability of this PPI interface provided by the use of short peptides and peptidomimetics has spurred interest in running a high-throughput screening (HTS) campaign aimed at identifying small molecule modulators of the FGF14:Navl.6 complex.
[0064] To identify small molecule probes targeting the FGF14:Navl.6 PPI interface, the FGF14:Navl.6 complex was reconstituted using the split-luciferase complementation assay (LCA), and a candidate pool of -45,000 commercially available compounds was screened. An established screening pipeline was employed to validate hits. Fig. 1A. shows results of the LCA primary screen of -45,000 compounds showing hits based on a Z-score criterion. Fig. IB summarizes exclusion of compounds based on the CellTiter Blue (CTB) cell viability fluorescence assay. Fig. 1C shows results of counter screen of non-toxic hits against the luciferase enzyme. Fig. ID shows dose-response of repurchased top hits after triplicate rescreen and prioritization based on drug-like properties.
[0065] Of the three identified hits with conserved pharmacodynamic profiles, compound 7605086 displayed the most favorable drug-like properties for CNS drug development. To improve the potency and aqueous solubility of compound 7605086, substituents of the parental scaffold were replaced, producing probe compound
PW01028 after two rounds of optimization.
[0066] Table 1. Efficacy of 34 1st generation 7605086 analogs.
Figure imgf000017_0001
Figure imgf000018_0001
[0067] Notably, according to the LCA, compound PW01028 modulated FGF14:Navl.6 complex formation with an IC50 of -250 nM. In addition, surface plasmon resonance (SPR) showed that compound PW01028 displayed nanomolar binding affinity to FGF14 with evidence for ligand binding to the FGF14R117 residue, a previously identified “hot-spot” at the FGF14:Navl.6 PPI interface. Functionally, compound PW01028 was shown to exacerbate FGF14-mediated regulatory effects on Navi.6 channel inactivation, causing a marked (+ 15 mV) depolarizing shift in the voltage-dependence of steady-state inactivation of the transient Na+ current. The mechanism of action (MOA) of compound PW01028 was recapitulated in MSNs of the
NAc, where the compound hampered Nav channel closure, prolonged Na+ currents, and consequently potentiated intrinsic firing. Importantly, these phenotypes observed in wild-type mice were absent in Fgfl4-/- mice. This suggested that the compound regulates accumbal output to increase motivational states in demotivated subjects. [0068] Table 2. Efficacy of certain embodiments, namely exemplary analogs.
Figure imgf000018_0002
Figure imgf000019_0001
[0069] Table 3. Efficacy of certain embodiments, namely exemplary analogs.
Figure imgf000019_0002
Figure imgf000020_0001
[0070] EXAMPLES
[0071] Biological testing
[0072] Primary assays: Split-luciferase complementation assay (LCA), The primary assay to detect FGF14:Navl.6 complex formation in real-time in living cells is the split-luciferase complementation assay (LCA), which has been designed and successfully implemented specifically to study PPI between the Nav channel and iFGFs. With LCA, in-cell reconstitution of the FGF14:Navl.6 channel complex was detected upon addition of the D-luciferin substrate, as a robust light signal representing the strength of interaction between the two binding partners. LCA is a highly sensitive, robust, and reproducible assay tolerable to non-aqueous solvents such as DMSO to a final concentration of 0.5%. Compounds were first tested at one single concentration in 384-well plates. Statistical parameters for compound selection are as follows: Z’=0.75, signal to noise=14.8, signal window=11.3. The high signal-to-noise ratio, favorable dynamic range, and reversibility of luminescence-based signals make LCA the ideal for HTS of potential regulators, as well as rapid dose-dependency studies (>8 concentrations) to help guide subsequent in-depth hit validation using more labor-intensive approaches. The HEK293 cell line co-expressing CLuc-FGF14 and CD4-Navl ,6-NLuc was referred to as the LCA cell line.
[0073] Counter screening assays: Cell viability assay. The CellTiter-Blue® (CTB) Cell Viability Assay is a widely used, reliable fluorescent method for monitoring cell viability in HTS. The assay is based on the ability of living cells to convert a redox dye (resazurin) into a fluorescent end-product (resorufin). Nonviable cells rapidly lose metabolic capacity and thus do not generate a fluorescent signal. The assay is used in our pipeline as the first counter screening assay to eliminate toxic compounds. It is initiated by dispensing the proper amount of CTB reagent (i.e., 10 pL) per well in 384-well plates. Fluorescence is then read after 16 hrs, and cut- offs are set at a Z-score of <-3 to identify and exclude toxic compounds (Fig. IB). The assay was typically run at a single, maximal concentration of the test compound calculated from the IC50. Additional details about the use of this assay can be found in previous publications.
[0074] Full-length luciferase assay. To account for false positive results, compounds were tested against cells transfected with Photinus firefly luciferase control and selected on the basis of rigorous statistical criteria (Fig. 1C). The effect of compounds on the full-length luciferase assay was expressed as percent luminescence normalized to per-plate DMSO controls (n = 16 per plate); compounds were selected based on (Z-score > 3.11).
[0075] Dose responses. Non-toxic active compounds were tested using a 10-point dose response (w=4 per concentration) and selected based on estimated potency, efficacy, and structural diversity (IC50). Blinded test-retest of compounds from the HTS library showed reliability with a R2 > 0.75 (n=8 compounds, IC50 value range across a 100-fold range). The HTS campaign provides evidence of throughput of > 10 compounds per week, run with sufficient replicates (n=4) to produce robust and reproducible 10-point dose-response curves (Fig. ID).
[0076] Secondary bioactivity assays: Surface plasmon resonance (SPR). Analogues were then tested using SPR against FGF14 and Navl.6-C-terminal tail purified proteins, the gold standard for protein binding studies. SPR experiments were used to quantitatively assess the binding affinity of analogues, serving as both a secondary bioactivity assay to determine accurate binding affinities for proteimligand interactions via KD, Kon and Koff, as well as to assess the compound’s ability to disrupt PPI. The reliability of the model, goodness of fit, and reported kinetic and binding constants were validated by varying flow rates, immobilization densities, or different chips. Statistical analysis was conducted by visually inspecting the goodness of fit of the data from the residuals. Additionally, c2 was used as a global measure for residual noise; standard deviation was used to report errors in measurements by repeating the experiment at least three times.
[0077] Figs. 2A and 2B summarize selectivity and orthogonal validation of hits from the screening assay. As shown in Fig. 2A, the top 16 hits were screened (50 pM) against the FGF13-la:Navl.6, FGF13-lB:Navl.6, and FGF14:Navl.2 complexes, as well as the FGF14 dimer, using LCA. Compounds that modulated complex assembly by > 25% were excluded from further studies. Referring to Fig. 2B, the remaining 5 selective hits were then quantitatively assessed using SPR. Binding sensorgrams are shown for FGF14 (left) and Navi.6 (middle) and normalized steady-state saturation plots (right) reveal differences in compound: protein binding affinities. Kinetic analysis of each ligand/ analyte interaction was obtained by fitting the response data to the simplest Langmuir 1 : 1 interaction model (KD = koff/kon). The KD of compound 7605 was 2.9 mM for FGF14 and 13.6 mM for Navi.6.
[0078] Confirmatory assays: Automated and manual patch-clamp electrophysiology in heterologous cells. Patch-clamp electrophysiology is a rigorous, sophisticated confirmatory and orthogonal assay that serves to assess compound functional activity, mechanism of action, specificity, and selectivity toward various Nav isoforms. It is highly predictive of in vivo efficacy of compounds. In this assay, compounds are tested in cells stably expressing FGF 14 and Navi .6 or other relevant iFGF:Nav channel pairs. Initially screened with an automated planar patch-clamp system, compounds were tested with an 8-point dose-response in 384-well plates with a throughput of >2,000 data sets/week. Compounds were then confirmed with manual patch-clamp at targeted concentrations. A multitude of physiological parameters of Nav channels including Na+ current amplitude, kinetics, voltagedependence, use-dependency, and time-dependency reflecting the channel closed, opened, and inactivated states were automatically measured using specialized software (i.e., CLAMPEX). Data were typically derived from n=10-20 recordings, N=3 batches of cells. Data were compared using either Student’s t-test or two-way ANOVA mixed model.
[0079] Patch-clamp electrophysiology in brain slices. This assay provides a critical confirmatory step from the heterologous cell to the native system. With this assay, selected compounds were tested (typically, 3 concentrations) for their modulatory effects on MSN firing and Na+ currents using current clamp and voltage clamp recordings Parameters of interest included action potential threshold, amplitude, rise time, firing frequency, amplitude of Na+ currents and passive properties (i.e., Rseries, Rinput, Vm). Not only is this assay predictive of a compound’s in vivo activity, it provides an assessment of potential toxicity and side effects based on secondary measurements (i.e., frequency, amplitude, and kinetics of synaptic potentials, Rinput, Vm). This assay was also used as the first target validation step in native tissue as compounds are concomitantly tested in neurons from Fgfl4-/- mice. Recordings were conducted from at least N=3 animals, n=10-15 recordings; effect is calculated using ANOVA mixed model.
[0080] Screening of compounds and selection of PW01028. Analogue potency was measured using a 10-point dose response in the CLuc-FGF14, CD4-Navl.6 C-tail- NLuc double expressing cell line suitable for the LCA; counter screens against the full-length Photinus luciferase, along with the fluorescence-based cell viability test and selectivity against related targets were run in parallel using 4-point doseresponse. Figs. 2A and 2B summarize selectivity and orthogonal validation of hits from the screening assay.
[0081] As shown in Fig. 2A, the top 16 hits were screened (50 pM) against the FGF13- la:Navl.6, FGF13-lB:Navl.6, and FGF14:Navl.2 complexes, as well as the FGF14 dimer, using LCA. Compounds that modulated complex assembly by > 25% were excluded from further studies.
[0082] Referring to Fig. 2B, the remaining 5 selective hits were then quantitatively assessed using SPR. Binding sensorgrams are shown for FGF14 (left) and Navi.6 (middle) and normalized steady-state saturation plots (right) reveal differences in compound: protein binding affinities. Kinetic analysis of each ligand/analyte interaction was obtained by fitting the response data to the simplest Langmuir 1 : 1 interaction model (KD = koff/kon). The KD of compound 7605086 was 2.9 mM for FGF14 and 13.6 mM for Navi.6. Compound PW01028 displayed nanomolar potency in the LCA dose-response studies.
[0083] Functional validation and mechanism of action of optimized PW01028. FGF14 stands out among iFGFs as a potent, specific, and diverse modulator of Nav channels, especially Navi.6. When expressed in recombinant cells, FGF14 suppressed or augmented Navl.6-encoded currents and channel availability, depending on its N-terminal spliced isoform. In the native system, genetic deletion of FGF14 caused suppression of Navl.6-mediated persistent and/or resurgent currents, while its overexpression increased Na+ current peak amplitude and channel availability. This suggested a complex functional role for FGF14 in modulating native Na+ currents that can be utilized to develop allosteric Navi.6 modulators as probes for excitability. [0084] Functional activity of Compound PW01028. To study compound PW01028 functional activity against Navi.6-enconded currents were studied in heterologous cells stably expressing Navi.6 and/or FGF14-GFP (Fig. ). From these studies it was concluded that compound PW01028 markedly shifted V1/2 and steady-state inactivation to a more depolarized potential. If reproduced in MSN, this phenotype is expected to increase intrinsic firing. Notably, compound PW01028 had no functional effects in HEK-Navl.6 expressing the GFP control construct which provides evidence of target validation of compound PW01028 (Fig. 11). Importantly, these results demonstrate that probes targeting the FGF14:Navl.6 PPI interface act on non-conserved allosteric surfaces within the Nav channel complex, and as such, may exhibit a higher degree of specificity compared to any other known Nav channel modulators.
[0085] Target validation of compound PW01028 in NAc slices. As expected from heterologous cell studies (Fig. 12), treatment with compound PW01028 (1 micromolar) potentiated MSN firing and transient Na+ currents (INap) (Fig. 12) in Fgfl4+/+ mice but was inactive in MSN from Fgfl4-/- mice (Fig. 12G-I), providing evidence for target validation of compound PW01028.
[0086] 4.1. Chemistry
[0087] All commercially available starting materials and solvents were reagent grade and used without further purification. Reactions were performed under a nitrogen atmosphere in dry glassware with magnetic stirring. Preparative column chromatography was performed using silica gel 60, particle size 0.063-0.200 mm (70-230 mesh, flash). Analytical TLC was carried out employing silica gel 60 F254 plates (Merck, Darmstadt). Visualization of the developed chromatograms was performed with detection by UV (254 nm). NMR spectra were recorded on a Brucker-300 (1H, 300 MHz; 13C, 75 MHz; 19F, 282 MHz) spectrometer. 1H and 13C NMR spectra were recorded with TMS as an internal reference. Chemical shifts were expressed in ppm, and J values were given in Hz. High-resolution mass spectra (HRMS) were obtained from Thermo Fisher LTQ Orbitrap Elite mass spectrometer. Parameters include the following: Nano ESI spray voltage was 1.8 kV; Capillary temperature was 275 °C and the resolution was 60,000; Ionization was achieved by positive mode. Melting points were measured on a Thermo Scientific Electrothermal Digital Melting Point Apparatus and uncorrected. Purities of final compounds were established by analytical HPLC, which was carried out on a Shimadzu HPLC system (model: CBM-20A LC-20AD SPD-20A UV/VIS). HPLC analysis conditions: Waters pBondapak C18 (300 x 3.9 mm); flow rate 0.5 mL/min; UV detection at 270 and 254 nm; linear gradient from 10% acetonitrile in water to 100% acetonitrile in water in 20 min followed by 30 min of the last-named solvent (0.1% TFA was added into both acetonitrile and water). All biologically evaluated compounds were > 95% pure.
[0088] Synthetic Experimental Procedures For Synthesis ofPW01028 Analogs
[0089] Synthesis of 7605086 (also known as PW0989)
Figure imgf000025_0001
PW0985 PW0985B PW0988 PW0989
[0090] Reagents and conditions: (a) tert-butyl 2-bromoacetate, K2CO3, DMF, rt, overnight, 96%. (b) TFA, rt, 4 h, quant, (c) m-toluidine, EDCI, DMAP, DMF, rt, overnight, 82%. (d) NaBH4, MeOH, 0 °C, 1 h, 79%.
[0091] tert- Butyl 2-(3-formyl-1H- indol-l-yl (acetate (PW0985). A solution of tertbutyl 2-bromoacetate (4.7 g, 24 mmol) in DMF (20 mL) was slowly added to a stirred mixture of 17-indole-3-carbaldehyde (2.9 g, 20 mmol) and K2CO3 (5.5 g, 40 mmol) in 20 mL of dry DMF. The reaction solution was stirred at rt overnight until TLC indicated the end of reaction. Then poured the solution into ice water (200 mL) and then extracted with EtOAc (100 mL x 3). The organic phase was washed with brine, dried over Na2SO4, and then concentrated under reduced pressure. The residue was purified by flash column chromatography (DCM/MeOH = 100/1) to get the PW0985 as a white solid (5.0 g, 96%). 1H NMR (300 MHz, Chloroform-d/) δ 10.02 (s, 1H), 8.38 - 8.27 (m, 1H), 7.74 (s, 1H), 7.31 (dddd, J= 16.8, 6.1, 3.5, 1.7 Hz, 3H), 4.80 (s, 2H), 1.46 (s, 9H).
[0092] 2-(3-Formyl-1H- indol-l-yl)acetic acid. In a round-bottom flask, compound (2.6 g, 10 mmol) was dissolved in TFA (15 mL). The reaction solution was stirred at rt for 2 h until TLC indicated the end of reaction. After concentrated under reduced pressure to remove of the solvent, the residue was freeze-dried on a lyophilizer to get a white solid, which was used directly to the next step without further purification. 1H NMR (300 MHz, DMSO-d 6) δ 9.93 (s, 1H), 8.28 (s, 1H), 8.16 - 8.06 (m, 1H), 7.58 - 7.52 (m, 1H), 7.37 - 7.20 (m, 2H), 5.18 (s, 2H).
[0093] 2-(3-I ormyl-1H- indol-l-yl)-\-(iii-tolyl):icetamide (PW0988). In a roundbottom flask, compound (1.8 g, 7 mmol) was dissolved in 25 mL of anhydrous DMF, and the solution was cooled to 0 °C with an ice bath. m-Toluidine (1.1 g,
10.5 mmol), EDCI (2.7 g, 14 mmol), DMAP (1.7 g, 14 mmol) were added to the solution at 0 °C. Then removed the ice bath and the mixture solution was stirred at rt overnight until TLC indicated the end of reaction. Then poured the solution into ice water (100 mL) and extracted with EtOAc (50 mL x 3). The organic phase was washed with brine, dried over Na2SO4, and then concentrated under reduced pressure. The residue was purified by flash column chromatography (DCM/MeOH = 50/1) to get the PW0988 as a white solid (1.4 g, 82%). 1H NMR (300 MHz, DMSO-d6) δ 10.43 (s, 1H), 9.96 (s, 1H), 8.34 (s, 1H), 8.13 (dd, J= 7.8, 1.4 Hz, 1H), 7.59 - 7.53 (m, 1H), 7.44 (d, J= 2.0 Hz, 1H), 7.38 (d, J= 8.4 Hz, 1H), 7.30 (dtd, J= 13.8, 7.1, 1.3 Hz, 2H), 7.21 (t, = 7.8 Hz, 1H), 6.90 (d, J=
7.5 Hz, 1H), 5.21 (s, 2H), 2.27 (s, 3H).
[0094] 2-(3-(Hydroxymethyl)-1H- indol-l-yl)-\-(m -tolyl)acetainide (PW0989). In a round-bottom flask, compound (1.5 g, 5 mmol) was dissolved in 20 mL of MeOH, and the solution was cooled to 0 °C with an ice bath. NaBH4 (190 mg, 5 mmol) was slowly added to solution in a small portion and the solution was continually stirred for 1 h until TLC indicated the end of reaction. Then poured the solution into ice water (100 mL) and extracted with EtOAc (50 mL x 3). The organic phase was washed with brine, dried over Na2SO4, and then concentrated under reduced pressure. The residue was purified by flash column chromatography (DCM/MeOH = 50/1) to get the PW0989 as a white solid (1.2 g, 82%). 1H NMR (300 MHz, DMSO-d6) δ 10.27 (s, 1H), 7.62 (dt, J= 7.7, 1.0 Hz, 1H), 7.47 - 7.34 (m, 3H), 7.29 (s, 1H), 7.24 - 7.09 (m, 2H), 7.04 (ddd, J= 7.9, 7.0, 1.1 Hz, 1H), 6.89 (d, J= 7.5 Hz, 1H), 4.99 (s, 2H), 4.82 (t, J= 5.4 Hz, 1H), 4.72 - 4.60 (m, 2H), 2.27 (s, 3H).
Figure imgf000027_0001
R1 =
Figure imgf000027_0002
Figure imgf000027_0003
[0095] Reagents and conditions: (a) corresponding amine, NaBH(OAc)s, 1,2- di chloroethane, 0 °C ~ rt, 34%-82%.
[0096] 2-(3-((Methylainino)niethyl)-l //-indol- 1 -yl)-N-( in-tolyl)acetainide (PW0999). A RB flask with magnetic stir bar was charged with 2 mL of 1,2- di chloroethane, compound PW0988(58.4 mg, 0.2 mmol), and CH3NH2 (27 mg, 0.4 mmol). The solution was cooled to 0 °C with an ice bath. To the stirred reaction solution under a nitrogen atmosphere was added NaBH(OAc)3 (85 mg, 0.4 mmol) and AcOH (12 mg, 0.2 mmol). Then, removed the ice bath and the flask was sealed under nitrogen and stirred at room temperature overnight. The reaction was poured in water, and then extracted with CH2Q2 (10 mL><3). The organic phase was washed with brine, dried over Na2SO4, and then concentrated under reduced pressure. The residue was purified by flash column chromatography with DCM/MeOH to get the PW0999 as a colorless oil (21 mg, 34%). 1H NMR (300 MHz, Chloroforms/) δ 7.68 (dd, J= 7.6, 1.3 Hz, 1H), 7.56 (s, 1H), 7.35 - 7.28 (m, 2H), 7.27 - 7.21 (m, 1H), 7.20 - 7.10 (m, 3H), 7.08 (s, 1H), 6.90 (d, J= 7.0 Hz, 1H), 4.89 (s, 2H), 3.94 (s, 2H), 2.74 (s, 1H), 2.43 (s, 3H), 2.26 (s, 3H). 13C NMR (75 MHz, CDCI3) δ 166.6, 166.6, 138.9, 136.6, 128.7, 127.7, 127.3, 125.8, 123.2, 120.9, 120.6, 119.5, 117.4, 109.5, 50.3, 46.0, 35.6, 21.3. HRMS (ESI) calcd for C19H22N3O 308.1757 (M + H)+, found 308.1762.
[0097] 2-(3-((Propylainino)methyl)-l //-indol- 1 -yl)-N-( m -ttolyl)acetainide (PW01011). Following the similar synthetic procedure that used to prepare compound PW0999, compound PW01011 as a colorless oil (46 mg, 69%). 1H NMR (300 MHz, Chloroform-d ) δ 7.72 (d, J= 7.8 Hz, 1H), 7.31 (d, J= 6.6 Hz, 2H), 7.23 (td, J= 8.2, 4.0 Hz, 2H), 7.13 (d, J= 3.5 Hz, 4H), 6.91 (d, J= 6.6 Hz, 1H), 4.87 (s, 2H), 4.03 (s, 2H), 2.73 (t, J= 7.3 Hz, 2H), 2.28 (s, 3H), 1.59 (q, J = 7.3 Hz, 2H), 0.96 (t, J= 7.4 Hz, 3H). 13C NMR (75 MHz, CDCl3) δ 166.5, 138.9, 136.8, 136.5, 128.7, 128.0, 126.5, 125.8, 123.2, 120.9, 120.5, 119.5, 117.4, 109.4, 53.4, 51.6, 50.5, 44.4, 23.0, 21.3, 11.8. HRMS (ESI) calcd for C21H25N3O 336.2070 (M + H)+, found 336.2077.
[0098] 2-(3-((Allylamino)methyl)-1H- indol- 1 -yl)-N-( m -tt olyl (acetamide (PW01005). Following the similar synthetic procedure that used to prepare compound PW0999, compound PW01005 as a colorless oil (37 mg, 56%). 1H NMR (300 MHz, Chloroform-c/( 3 7.74 (d, J= 7.8 Hz, 1H), 7.31 (dd, J= 5.9, 1.4 Hz, 2H), 7.24 (dt, J= 4.0, 2.1 Hz, 2H), 7.17 - 7.10 (m, 4H), 6.92 (dt, J= 8.4, 4.3 Hz, 1H), 5.99 (ddt, J= 16.4, 10.2, 6.0 Hz, 1H), 5.30 - 5.13 (m, 2H), 4.85 (s, 2H), 4.03 (s, 2H), 3.39 (dt, J= 5.9, 1.5 Hz, 2H), 2.28 (s, 3H). 13C NMR (75 MHz, CDCI3) δ 166.5, 138.9, 136.8, 136.6, 136.5, 128.8, 128.0, 126.5, 125.8, 123.2, 121.0, 120.5, 119.6, 117.5, 116.3, 109.4, 52.1, 50.4, 43.9, 21.3. HRMS (ESI) calcd for C21H24N3O 334.1914 (M + H)+, found 334.1922.
[0099] 2-(3-((Cyclopropylamino)methyl)-1H-Ni-n(dol-l-yl)- m -ttolyl)acetamide (PW01004). Following the similar synthetic procedure that used to prepare compound PW0999, compound PW01004 as a colorless oil (46 mg, 69%). 1H NMR (300 MHz, Chloroform-c/( 3 7.83 - 7.69 (m, 1H), 7.37 - 7.28 (m, 2H), 7.24 (ddd, J= 8.0, 5.7, 2.4 Hz, 1H), 7.20 - 7.04 (m, 5H), 6.93 (dd, J= 6.9, 2.1 Hz, 1H), 4.85 (s, 2H), 4.10 (s, 2H), 2.29 (s, 4H), 0.50 (ddt, J= 8.2, 4.0, 2.0 Hz, 4H). 13C NMR (75 MHz, CDCI3) δ 166.4, 138.9, 136.8, 136.5, 128.8, 128.2, 126.3, 125.8, 123.2, 120.9, 120.4, 119.7, 117.4, 117.0, 109.3, 50.5, 44.3, 30.5, 21.4, 6.5. HRMS (ESI) calcd for C21H24N3O 334.1914 (M + H)+, found 334.1922.
[0100] 2-(3-((Benzylamino)methyl)-l //-indol- 1 -yl)-A-(m -tolyl)acetamide (PW01007). Following the similar synthetic procedure that used to prepare compound PW0999, compound PW01007 as a colorless oil (60 mg, 79%). 1H NMR (300 MHz, Chloroform-c/( 3 7.74 (dd, J= 7.7, 1.3 Hz, 1H), 7.46 - 7.28 (m, 7H), 7.27 - 7.18 (m, 2H), 7.18 - 7.12 (m, 3H), 7.10 (s, 1H), 7.00 - 6.87 (m, 1H), 4.85 (s, 2H), 4.06 (s, 2H), 3.94 (s, 2H), 2.29 (s, 3H). 13C NMR (75 MHz, CDCI3) 3 166.5, 140.2, 138.9, 136.9, 136.5, 128.8, 128.5, 128.2, 128.1, 127.1, 126.5, 125.8, 123.2, 120.9, 120.5, 119.7, 117.5, 116.5, 109.3, 53.6, 50.5, 44.1, 21.3. HRMS (ESI) calcd for C25H26N3O 384.2070 (M + H)+, found 384.2079.
[0101] 2-(3-(((2- 1 lydroxyethyl )ainino)meth yl )- 1H- indol- 1 -yl
Figure imgf000029_0001
tolyl)acetamide (PW01006). Following the similar synthetic procedure that used to prepare compound PW0999, compound PW01006 as a white solid (49 mg, 73%). 1H NMR (300 MHz, DMSO-d6) δ 10.24 (s, 1H), 7.63 (d, J= 7.8 Hz, 1H), 7.49 - 7.32 (m, 3H), 7.28 (s, 1H), 7.16 (dt, J= 19.1, 7.7 Hz, 2H), 7.03 (t, J= 7.4 Hz, 1H), 6.88 (d, J= 7.5 Hz, 1H), 4.99 (s, 2H), 4.48 (s, 1H), 3.90 (s, 2H), 3.57 - 3.44 (m, 2H), 2.68 (t, J= 5.7 Hz, 2H), 2.26 (s, 3H). 13C NMR (75 MHz, DMSO) δ
166.8, 139.1, 138.5, 137.3, 129.1, 128.6, 127.9, 124.6, 121.7, 120.2, 119.5, 119.1,
116.8, 113.6, 110.1, 60.6, 51.6, 49.6, 44.5, 21.6. HRMS (ESI) calcd for C20H24N3O2 338.1863 (M + H)+, found 338.1870.
[0102] 2-(3-(( Dimet hylamino)methyl)-1H- indol-l-yl)-\-(m -ttolyl)acetamide (PW01001). Following the similar synthetic procedure that used to prepare compound PW0999, compound PW01001 as a white solid (51 mg, 82%). 1H NMR (300 MHz, Chloroforms/) δ 7.80 - 7.71 (m, 1H), 7.43 - 7.26 (m, 3H), 7.22 (ddd, J= 8.0, 6.7, 1.5 Hz, 1H), 7.19 - 7.05 (m, 4H), 6.96 - 6.86 (m, 1H), 4.88 (s, 2H), 3.72 (s, 2H), 2.36 (s, 6H), 2.27 (s, 3H). 13C NMR (75 MHz, CDCI3) δ 166.4,
138.9, 136.6, 128.8, 128.6, 128.1, 125.8, 123.1, 120.9, 120.6, 119.8, 117.4, 113.3, 109.4, 54.1, 50.4, 45.0, 21.3. HRMS (ESI) calcd for C20H24N3O 322.1914 (M + H)+, found 322.1921.
[0103] 2-(3-((Diethylainino)methyl)-l //-indol- 1 -yl)-N-( m -ttolyl)acetainide (PW01003). Following the similar synthetic procedure that used to prepare compound PW0999, compound PW01003 as a white solid (41 mg, 59%). 1H NMR (300 MHz, Chloroforms/) δ 7.84 (d, J= 7.8 Hz, 1H), 7.40 - 7.28 (m, 2H), 7.28 - 7.14 (m, 2H), 7.12 (dd, J= 4.5, 2.9 Hz, 3H), 7.00 (s, 1H), 6.92 (d, J= 7.0 Hz, 1H), 4.89 (s, 2H), 3.84 (s, 2H), 2.63 (q, J= 7.1 Hz, 4H), 2.29 (s, 3H), 1.14 (t, .7= 7.1 Hz, 6H). 13C NMR (75 MHz, CDCI3) δ 166.5, 138.9, 136.7, 136.5, 129.0, 128.8, 127.0, 125.8, 123.1, 120.7, 120.4, 117.2, 115.7, 109.1, 50.5, 48.1, 46.9, 21.3, 12.0. HRMS (ESI) calcd for C22H28N3O 350.2227 (M + H)+, found 350.2234. [0104] 2-(3-( l’yrrolidin-1 -ylmethyl)- 1H- indol- 1 -yl)- Nm-(-ttolyl)acetainide (PW01002). Following the similar synthetic procedure that used to prepare compound PW0999, compound PW01002 as a white solid (53 mg, 74%). 1 H NMR (300 MHz, Chloroforms/) δ 7.87 - 7.61 (m, 2H), 7.37 - 7.30 (m, 1H), 7.30 - 7.09 (m, 6H), 6.90 (d, J= 7.2 Hz, 1H), 4.84 (s, 2H), 3.93 (s, 2H), 2.88 - 2.70 (m, 4H), 2.26 (s, 3H), 1.83 (q, J = 3.4 Hz, 4H). 13C NMR (75 MHz, CDC13) δ
166.4, 138.9, 136.8, 136.6, 128.8, 128.7, 128.2, 125.7, 123.1, 120.9, 120.7, 119.4,
117.4, 111.4, 109.6, 53.8, 50.3, 49.8, 23.3, 21.3. HRMS (ESI) cal cd for C22H26N3O 348.2070 (M + H)+, found 348.2079.
[0105] 2-(3-(Morpholinomethyl)- 1H- indol-1 -yl)- N-(m -ttolyl)acetainide
(PW09100). Following the similar synthetic procedure that used to prepare compound PW0999, compound PW09100 as a white solid (57 mg, 79%). 1 H NMR (300 MHz, Chloroforms/) δ 7.84 (d, J= 7.8 Hz, 1H), 7.38 - 7.29 (m, 2H), 7.27 - 7.19 (m, 2H), 7.14 (dd, J= 7.4, 5.0 Hz, 4H), 6.93 (dd, J= 6.7, 2.1 Hz, 1H), 4.88 (s, 2H), 3.81 - 3.70 (m, 6H), 2.56 (dd, J= 5.7, 3.6 Hz, 4H), 2.29 (s, 3H). 13C NMR (75 MHz, CDCI3) δ 166.4, 139.0, 136.8, 136.5, 128.8, 127.6, 125.9, 123.2, 120.9, 120.5, 120.3, 117.4, 113.5, 109.3, 67.0, 53.8, 53.6, 50.4, 21.4. HRMS (ESI) calcd for C22H26N3O2 364.2020 (M + H)+, found 364.2029.
Figure imgf000030_0001
[0106] Reagents and conditions: (a) tert-butyl 2-bromoacetate, K2CO3, DMF, rt, overnight, 93%. (b) TFA, rt, 4 h, quant, (c) (1) m-toluidine, EDCI, DMAP, DMF, rt, overnight, 86%.
[0107] Methyl l-(2-(te/7-biitoxy)-2-oxoethyl)-1H- indole-3-carboxylate (PW01014). Following the similar synthetic procedure that used to prepare compound PW0985, compound PW01014 as a white solid (540 mg, 93%). 1 H NMR (300 MHz, Chloroforms/) 5 8.25 - 8.17 (m, 1H), 7.84 (s, 1H), 7.35 - 7.28 (m, 3H), 4.78 (s, 2H), 3.93 (s, 3H), 1.46 (s, 9H). [0108] 2-(3-(Methoxycarbonyl)-1H- indol-l-yl)acetic acid (PW01018). Following the similar synthetic procedure that used to prepare compound PW0985, compound PW01018 as a white solid (quant.). 1H NMR (300 MHz, DMSO-tfc) 5
13.15 (s, 1H), 8.14 (s, 1H), 8.06 - 7.95 (m, 1H), 7.55 - 7.47 (m, 1H), 7.30 - 7.18 (m, 2H), 5.14 (s, 2H), 3.82 (s, 3H).
[0109] Methyl 1 -(2-oxo-2-(m -ttolylainino)et hyl)- 1H- indole-3-carboxylate (PW01020). Following the similar synthetic procedure that used to prepare compound PW0985, compound PW01020 as a white solid (55 mg, 89%). 1H NMR (300 MHz, DMSO-d6) δ 10.36 (s, 1H), 8.18 (s, 1H), 8.08 - 7.99 (m, 1H), 7.54 - 7.48 (m, 1H), 7.43 (t, J= 1.8 Hz, 1H), 7.37 (d, J = 8.3 Hz, 1H), 7.30 - 7.16 (m, 3H), 6.89 (d, J= 7.5 Hz, 1H), 5.16 (s, 2H), 3.83 (s, 3H), 2.27 (s, 3H). 13C
NMR (75 MHz, DMSO) δ 165.8, 164.9, 138.9, 138.5, 137.4, 137.3, 129.1, 126.5,
124.8, 123.0, 122.1, 121.1, 120.2, 116.8, 111.2, 106.2, 51.2, 49.9, 21.6. HRMS
(ESI) calcd for C19H19N2O3 323.1390 (M + H)+, found 323.1398.
Figure imgf000031_0001
[0110] Reagents and conditions: (a) (1) corresponding substituted aniline, EDCI, DMAP, DMF, rt, overnight; (2) NaBH4, MeOH, 0 °C, 30 min, 34%-82% for two steps.
[0111] 2-(3-(IIydroxymethyl)-1H- indol-l-yl)-\-phenylacetainide (PW01022). In a round-bottom flask, compound PW0985B (52 mg, 0.2 mmol) was dissolved in 2 mL of anhydrous DMF, and the solution was cooled to 0 °C with an ice bath. aniline (37 mg, 0.4 mmol), EDCI (58 mg, 0.3 mmol), DMAP (49 mg, 0.4 mmol) were added to the solution at 0 °C. Then removed the ice bath and the mixture solution was stirred at rt overnight until TLC indicated the end of reaction. Then poured the solution into ice water (10 mL) and extracted with EtOAc (10 mL x 3). The organic phase was washed with 1 N HC1, 1 N NaHCCh, and brine, dried over Na2SO4, and then concentrated under reduced pressure. The residue was dissolved in 5 mL of MeOH, and the solution was cooled to 0 °C with an ice bath. NaBJL (15 mg, 0.4 mmol) was added to solution and the solution was continually stirred for 30 min until TLC indicated the end of reaction. Then poured the solution into ice water (10 mL) and extracted with EtOAc (10 mL x 3). The organic phase was washed with brine, dried over Na2SO4, and then concentrated under reduced pressure. The residue was purified by flash column chromatography (DCM/MeOH = 30/1) to get the PW01022 as a white solid (48 mg, 86%). 1H NMR (300 MHz, Methanol-d4) δ 7.71 (dt, J= 7.8, 1.0 Hz, 1H), 7.56 - 7.51 (m, 2H), 7.39 - 7.26 (m, 4H), 7.24 - 7.17 (m, 1H), 7.15 - 7.08 (m, 2H), 4.99 (s, 2H), 4.83 (s, 2H). 13C NMR (75 MHz, MeOD) δ 167.5, 137.9, 137.4, 128.4, 127.7, 127.6, 124.1, 121.7, 120.0, 119.2, 118.8, 115.5, 109.0, 55.6, 49.0. HRMS (ESI) calcd for C17H17N2O2 281.1285 (M + H)+, found 281.1285.
[0112N] -( 3-( hlorophenyl)-2-(3-(hydroxymethyl)- 1H- indol-1 -yl)acetainide (PW01023). Following the similar synthetic procedure that used to prepare compound PW01022, compound PW01023 as a white solid (47 mg, 76%). 1 H NMR (300 MHz, DMSO-d 6) δ 10.59 (s, 1H), 7.79 (s, 1H), 7.61 (d, J= 7.7 Hz, 1H), 7.48 (d, J= 8.1 Hz, 1H), 7.41 - 7.31 (m, 2H), 7.28 (s, 1H), 7.12 (d, J= 7.7 Hz, 2H), 7.03 (t, J= 7.4 Hz, 1H), 5.03 (s, 2H), 4.80 (t, J= 5.4 Hz, 1H), 4.65 (d, J = 5.3 Hz, 2H). 13C NMR (75 MHz, DM SO) δ 167.3, 140.6, 137.3, 133.6, 131.0, 128.2, 127.5, 123.7, 121.8, 119.6, 119.2, 119.1, 118.0, 116.3, 110.1, 55.7, 49.5. HRMS (ESI) calcd for Ci7Hi6ClN2O2Na 337.0714 (M + Na)+, found 337.0708.
[0113N] -( 3-I liiorophenyl)-2-(3-(hydroxymethyl)-1H- indol-l-yl)acetamide (PW01024). Following the similar synthetic procedure that used to prepare compound PW01022, compound PW01024 as a white solid (44 mg, 73%). 1 H NMR (300 MHz, DMSO-d6) δ 10.56 (s, 1H), 7.69 - 7.50 (m, 2H), 7.44 - 7.25 (m, 4H), 7.13 (ddd, J= 8.2, 7.0, 1.3 Hz, 1H), 7.03 (ddd, J= 8.0, 7.0, 1.1 Hz, 1H), 6.95 - 6.83 (m, 1H), 5.02 (s, 2H), 4.81 (t, J= 5.4 Hz, 1H), 4.71 - 4.56 (m, 2H). 13C NMR (75 MHz, DM SO) δ 167.3, 162.6 (d, J= 241.5 Hz), 140.9 (d, J= 11.0 Hz), 137.4, 131.0 (d, J= 9.5 Hz), 128.2, 127.5, 121.8, 119.6, 119.2, 116.3, 115.4 (d, J = 2.7 Hz), 110.4 (d, J= 21.2 Hz), 110.1, 106.41 (d, J = 26.2 Hz), 55.8, 49.5. HRMS (ESI) calcd for 321.1010 (M + Na)+, found 321.1012.
Figure imgf000033_0001
[0114] 2-(3-( Hydroxymethyl)-1H- indol-l-yl)-\-(3-
(trifluoromethyl)phenyl)acetamide (PW01025). Following the similar synthetic procedure that used to prepare compound PW01022, compound PW01025 as a white solid (43 mg, 61%). 1H NMR (300 MHz, Methanol-d4) δ 7.97 (s, 1H), 7.73 (dd, J= 11.4, 7.9 Hz, 2H), 7.47 (t, J= 8.0 Hz, 1H), 7.41 - 7.31 (m, 2H), 7.27 - 7.16 (m, 2H), 7.11 (t, J= 7.4 Hz, 1H), 4.97 (s, 2H), 4.83 (s, 2H). 13C NMR (75 MHz, MeOD) δ 138.8, 137.4, 130.8 (d, J= 32.3 Hz), 129.4, 127.7, 127.6, 123.0, 121.8, 120.3 (q, J= 3.4 Hz), 119.3, 118.9, 116.2 (d, J= 3.8 Hz), 115.5, 108.9,
55.6, 48.9. HRMS (ESI) calcd for C18H16F3N2O2 349.1158 (M + H)+, found 349.1154.
[0115] 2-(3-(Hydroxymethyl)-1H- indol-l-yl)-\-(3-methoxyphenyl)acetamide (PW01026). Following the similar synthetic procedure that used to prepare compound PW01022, compound PW01026 as a white solid (46 mg, 74%). 1 H NMR (300 MHz, Methanol-d4) δ 7.70 (d, J= 7.8 Hz, 1H), 7.35 (d, J= 8.1 Hz, 1H), 7.29 - 7.16 (m, 4H), 7.14 - 7.01 (m, 2H), 6.68 (dd, J= 8.3, 2.6 Hz, 1H), 4.94 (s, 2H), 4.81 (s, 2H), 3.74 (s, 3H). 13C NMR (75 MHz, MeOD) δ 167.5, 160.1, 139.0, 137.4, 129.2, 127.7, 127.6, 121.7, 119.2, 118.8, 115.4, 112.0, 109.7, 109.0, 105.7, 55.6, 54.3, 49.0. HRMS (ESI) calcd for C18H19N2O3 311.1390 (M + H)+, found 311.1393.
[0116N] -( 3-Cyanophenyl)-2-(3-(hydroxymethyl)-1H- indol-l-yl)acetamide (PW01027). Following the similar synthetic procedure that used to prepare compound PW01022, compound PW01027 as a white solid (41 mg, 67%). 1H NMR (300 MHz, Methanol-d4) δ 7.97 (t, J= 1.7 Hz, 1H), 7.78 - 7.72 (m, 1H), 7.69 (d, J= 7.8 Hz, 1H), 7.42 (d, J= 7.6 Hz, 2H), 7.33 (d, J= 8.1 Hz, 1H), 7.24 - 7.15 (m, 2H), 7.11 (d, J= 7.5 Hz, 1H), 4.96 (s, 2H), 4.81 (s, 2H). 13C NMR (75 MHz, MeOD) δ 167.8, 139.0, 137.4, 129.7, 129.7, 127.7, 127.6, 127.3, 124.0,
122.6, 121.8, 119.3, 118.9, 118.0, 115.5, 112.3, 108.9, 55.6, 48.9. HRMS (ESI) calcd for C18H16N3O2 306.1237 (M + H)+, found 306.1241.
[0117] Ethyl 3-(2-(3-(hydroxymethyl)-1H- indol-l-yl)acetaniido)benzoate (PW01028). Following the similar synthetic procedure that used to prepare compound PW01022, compound PW01028 as a white solid (52 mg, 74%). 1 H NMR (300 MHz, DMSO-d6) δ 10.58 (s, 1H), 8.25 (d, J= 2.0 Hz, 1H), 7.85 (d, J = 8.1 Hz, 1H), 7.64 (dd, J= 12.3, 7.7 Hz, 2H), 7.47 (t, J= 7.9 Hz, 1H), 7.39 (d, J= 8.1 Hz, 1H), 7.29 (s, 1H), 7.13 (t, J= 7.4 Hz, 1H), 7.03 (t, J= 13 Hz, 1H), 5.03 (s, 2H), 4.81 (t, J= 5.3 Hz, 1H), 4.65 (d, J= 5.4 Hz, 2H), 4.30 (q, J= 7.2 Hz, 2H), 1.31 (t, .7= 7.0 Hz, 3H). 13C NMR (75 MHz, DMSO) δ 167.2, 165.9, 139.5, 137.4, 130.9, 129.8, 128.2, 127.5, 124.5, 124.0, 121.8, 120.0, 119.6, 119.2, 116.3, 110.1, 61.3, 55.8, 49.5, 14.6. HRMS (ESI) calcd for C2oH2oFN204Na 375.1315 (M + Na)+, found 375.1321.
[0118] 2-(3-(IIydroxymethyl)-1H- indol-l-yl)-\-(3- (hydroxymethyl)phenyl)acetamide (PW01029). Following the similar synthetic procedure that used to prepare compound PW01022, compound PW01029 as a white solid (39 mg, 63%). 1H NMR (300 MHz, DMSO-d6) δ 10.32 (s, 1H), 7.67 - 6.94 (m, 9H), 5.17 (t, J= 5.7 Hz, 1H), 4.99 (s, 2H), 4.79 (d, J= 6.0 Hz, 1H), 4.64 (d, J= 5.5 Hz, 2H), 4.45 (d, J= 5.6 Hz, 2H). 13C NMR (75 MHz, DMSO) δ 166.8,
143.8, 139.0, 137.3, 128.9, 128.3, 127.5, 122.0, 121.7, 119.6, 119.2, 117.9, 117.7, 116.2, 110.1, 63.2, 55.8, 49.6. HRMS (ESI) calcd for C18H19N2O3 311.1390 (M + H)+, found 311.1395.
[0119] N-(3-( Diniethylaniino)phenyl)-2-(3-(hydroxymethyl)- 1H- indol-1 - yl)acetamide (PW01030). Following the similar synthetic procedure that used to prepare compound PW01022, compound PW01030 as a white solid (27 mg, 42%). 1H NMR (300 MHz, DMSO-d6) δ 10.16 (s, 1H), 7.61 (d, J= 7.6 Hz, 1H), 7.38 (d, J= 8.1 Hz, 1H), 7.27 (s, 1H), 7.07 (dq, J= 18.0, 7.6, 7.1 Hz, 4H), 6.87 (d, J= 8.0 Hz, 1H), 6.44 (d, J= 8.4 Hz, 1H), 4.97 (s, 2H), 4.79 (t, J= 5.0 Hz, 1H), 4.64 (d, J= 5.4 Hz, 2H), 2.85 (s, 6H). 13C NMR (75 MHz, DMSO) 5 166.7, 151.3,
139.9, 137.3, 129.6, 128.3, 127.5, 121.7, 119.6, 119.2, 116.1, 110.1, 108.4, 107.8, 103.6, 55.7, 49.6, 40.5. HRMS (ESI) calcd for C19H22N3O2 324.1707 (M + H)+, found 324.1713.
[0120] N-( 3-Ethylphenyl)-2-(3-(hydroxymethyl)-l //-indol- 1 -yl)acetainide (PW01031). Following the similar synthetic procedure that used to prepare compound PW01022, compound PW01031 as a white solid (52 mg, 84%). 1 H NMR (300 MHz, DMSO-d6) δ 10.27 (s, 1H), 7.61 (d, J= 7.8 Hz, 1H), 7.40 (dd, J = 16.7, 10.5 Hz, 3H), 7.28 (s, 1H), 7.16 (dt, J= 25.0, 7.8 Hz, 2H), 7.02 (t, J= 13 Hz, 1H), 6.91 (d, J= 7.5 Hz, 1H), 4.98 (s, 2H), 4.79 (d, J= 5.4 Hz, 1H), 4.65 (d, J = 5.4 Hz, 2H), 2.56 (d, J= 7.4 Hz, 2H), 1.15 (t, J = 7.6 Hz, 3H). 13C NMR (75 MHz, DMSO) 5 166.8, 144.8, 139.2, 137.3, 129.2, 128.3, 127.5, 123.5, 121.7,
119.6, 119.2, 119.0, 117.0, 116.2, 110.1, 55.8, 49.6, 28.7, 15.9. HRMS (ESI) calcd for C19H22N3O2 331.1417 (M + H)+, found 331.1424.
[0121] 2-(3-(Hydroxymethyl)- 1H- indol- 1 -y I )-\-( o-t oly I )acet a m ide (PW 01032).
Following the similar synthetic procedure that used to prepare compound PW01022, compound PW01032 as a white solid (35 mg, 59%). 1H NMR (300 MHz, Methanol-t/4) d 7.73 (d, J= 7.8 Hz, 1H), 7.47 - 7.35 (m, 2H), 7.30 (s, 1H), 7.24 (t, J= 7.6 Hz, 1H), 7.20 - 7.09 (m, 4H), 5.03 (s, 2H), 4.83 (s, 2H), 2.05 (s, 3H). 13C NMR (75 MHz, MeOD) δ 168.1, 137.2, 134.9, 132.2, 130.1, 127.7,
127.6, 126.0, 125.9, 124.9, 121.9, 119.5, 119.0, 115.9, 109.1, 55.6, 49.0, 16.4. HRMS (ESI) calcd for Ci8Hi8N2O2Na 317.1260 (M + Na)+, found 317.1266.
[0122] 2-(3-( Hydroxymethyl)-1H- indol- l-yl)-\-(p-tolyl)acetainide (PW01033).
Following the similar synthetic procedure that used to prepare compound PW01022, compound PW01033 as a white solid (40 mg, 68%). 1H NMR (300 MHz, Methanol-t/4) 8 7.71 (d, J= 8.0 Hz, 1H), 7.38 (t, J= 9.6 Hz, 3H), 7.30 - 7.04 (m, 5H), 4.97 (s, 2H), 4.83 (s, 2H), 2.30 (s, 3H). 13C NMR (75 MHz, MeOD) 6 167.3, 137.4, 135.2, 134.0, 128.9, 127.7, 121.7, 120.0, 119.2, 118.8, 115.5, 109.0, 55.6, 49.0, 19.5. HRMS (ESI) calcd for Ci8Hi8N2O2Na 317.1260 (M + Na)+, found 317.1266.
[0123] 7V-(3-Chloro-5-fluorophenyl)-2-(3-(hydroxymethyl)-lH-indol-l- yl)acetamide (PW01034). Following the similar synthetic procedure that used to prepare compound PW01022, compound PW01034 as a white solid (31 mg, 47%). 1H NMR (300 MHz, Methanol-^) δ 7.70 (d, J= 7.8 Hz, 1H), 7.41 (dt, J = 12.4, 2.1 Hz, 2H), 7.33 (d, J= 8.1 Hz, 1H), 7.26 - 7.16 (m, 2H), 7.15 - 7.07 (m, 1H), 6.92 (dd, J= 8.5, 2.1 Hz, 1H), 4.97 (s, 2H), 4.82 (s, 2H). 13C NMR (75 MHz, MeOD) δ 167.8, 164.4, 161.1, 140.6 (d, J = 12.3 Hz), 137.4, 134.8 (d, J= 12.5 Hz), 127.6, 127.5, 121.8, 119.3, 118.8, 115.5, 115.3 (d, J= 3.3 Hz), 111.0 (d, = 25.5 Hz), 108.9, 105.1 (d, J= 26.5 Hz)., 55.6, 48.9. HRMS (ESI) calcd for C17H15CIFN2O2 333.0801 (M + H)+, found 333.0809.
[0124] 7V-(3-Chloro-4-fluorophenyl)-2-(3-(hydroxymethyl)-lH-indol-l- yl)acetamide (PW01035). Following the similar synthetic procedure that used to prepare compound PW01022, compound PW01035 as a white solid (28 mg, 42%). 1H NMR (300 MHz, Methanol-^) δ 7.80 (dd, J= 6.7, 2.6 Hz, 1H), 7.71 (dt, J= 7.8, 1.0 Hz, 1H), 7.43 (ddd, J= 9.0, 4.2, 2.6 Hz, 1H), 7.38 - 7.32 (m, 1H), 7.26 (s, 1H), 7.24 - 7.15 (m, 2H), 7.11 (ddd, J= 8.0, 7.0, 1.1 Hz, 1H), 4.98 (s, 2H), 4.82 (s, 2H). 13C NMR (75 MHz, MeOD) 5 167.6, 156.2, 152.9, 137.4, 135.0, 127.6 (d, J= 5.5 Hz), 121.8 (d, J= 3.8 Hz), 120.2 (d, J= 18.6 Hz), 119.9 (d, .7= 7.0 Hz), 119.3, 118.8, 116.2 (d, J = 22.2 Hz), 115.5, 108.9, 55.6, 48.9. HRMS (ESI) calcd for C17H15CIFN2O2 333.0801 (M + H)+, found 333.0809.
[0125] 7V-(4-Chloro-3-fluorophenyl)-2-(3-(hydroxymethyl)- 1 //-indol-1 - yl)acetamide (PW01036). Following the similar synthetic procedure that used to prepare compound PW01022, compound PW01036 as a white solid (37 mg, 56%). 1 H NMR (300 MHz, Methanol-^) δ 7.75 - 7.63 (m, 2H), 7.46 - 7.32 (m, 2H), 7.31 - 7.24 (m, 2H), 7.20 (ddd, J= 8.3, 7.0, 1.3 Hz, 1H), 7.11 (ddd, J= 8.0, 7.0, 1.1 Hz, 1H), 5.00 (s, 2H), 4.83 (s, 2H). 13C NMR (75 MHz, MeOD) δ 167.7, 166.6, 137.4, 130.2, 127.6 (d, J = 6.4 Hz), 121.8, 119.2, 118.8, 116.1 (d, J= 3.5 Hz), 115.5, 108.9, 108.0 (d, = 26.0 Hz), 55.6, 48.9. HRMS (ESI) calcd for C17H15CIFN2O2 333.0801 (M + H)+, found 333.0809.
[0126]N-( 3-( hloro-4-(trinuoroniethyl)phenyl)-2-(3-(hydroxymethyl)- 1H- indol- l-yl)acetamide (PW01037). Following the similar synthetic procedure that used to prepare compound PW01022, compound PW01037 as a white solid (33 mg, 43%). 1H NMR (300 MHz, Methanol-^) δ 7.95 (d, J= 1.9 Hz, 1H), 7.71 (dd, J= 8.4, 1.8 Hz, 2H), 7.63 (dd, J= 8.8, 2.0 Hz, 1H), 7.38 - 7.32 (m, 1H), 7.27 (s, 1H), 7.21 (ddd, J= 8.2, 7.0, 1.3 Hz, 1H), 7.12 (ddd, J= 8.0, 7.0, 1.1 Hz, 1H), 5.04 (s, 2H), 4.83 (s, 2H). 13C NMR (75 MHz, MeOD) δ 168.0, 166.6, 142.6, 137.4, 132.3 - 132.1 (m), 127.9 (d, J= 5.4 Hz), 127.6 (2C), 124.8, 123.0, 122.8 (d, J= 32.0 Hz), 121.5, 121.2, 119.3, 118.8, 117.2, 115.6, 108.9, 55.6, 48.9. HRMS (ESI) calcd for CI8HI5C1F3N2O2 383.0769 (M + H)+, found 383.0776.
[0127]N-( 3.5-l)ichlorophenyl)-2-(3-(hydroxymethyl)-l //-indol- 1 -yl)acetainide (PW01038). Following the similar synthetic procedure that used to prepare compound PW01022, compound PW01038 as a white solid (57 mg, 81%). 1H NMR (300 MHz, Methanol-^) 5 7.70 (dd, J= 7.8, 1.2 Hz, 1H), 7.60 (d, J= 1.8 Hz, 2H), 7.34 (d, J= 8.1 Hz, 1H), 7.26 - 7.17 (m, 2H), 7.16 - 7.06 (m, 2H), 4.98 (s, 2H), 4.82 (s, 2H). 13C NMR (75 MHz, MeOD) 5 167.8, 140.3, 137.4, 134.8, 127.6, 127.5, 123.4, 121.8, 119.3, 118.8, 117.8, 115.6, 108.9, 55.6, 48.9. HRMS (ESI) calcd for CnHuCh^ChNa 371.0325 (M + Na)+, found 371.0332.
[0128]N-( 3.4-l)iniioroplieiiyl)-2-(3-(hydroxyniethyl)- 1H- indol-1 -yl)acetainide (PW01039). Following the similar synthetic procedure that used to prepare compound PW01022, compound PW01039 as a white solid (36 mg, 57%). JH NMR (300 MHz, Methanol-^) δ 7.68 (dd, J= 13.7, 7.0 Hz, 2H), 7.22 (ddt, J= 28.1, 19.1, 8.0 Hz, 6H), 4.97 (s, 2H), 4.82 (s, 2H). 13C NMR (75 MHz, MeOD) 5
167.5, 137.4, 127.6 (d, J= 6.5 Hz), 121.8, 119.2, 118.8, 116.8 (d, J= 18.9 Hz), 115.8 (dd, J= 5.6, 3.3 Hz), 115.5, 109.1 (d, J = 22.0 Hz), 108.9, 55.6, 48.9. HRMS (ESI) calcd for Ci7Hi4F2N2O2Na 339.0916 (M + Na)+, found 339.0916.
[0129]N-( 3.5-Dinuorophenyl)-2-(3-(hydroxymethyl)- 1H- indol-1 -yl)acetainide (PW01040). Following the similar synthetic procedure that used to prepare compound PW01022, compound PW01040 as a white solid (24 mg, 38%). 1H NMR (300 MHz, Methanol-^) 3 1.16 - 7.67 (m, 1H), 7.38 - 7.32 (m, 1H), 7.30 - 7.17 (m, 4H), 7.11 (td, J= 7.4, 1.1 Hz, 1H), 6.68 (tt, J= 9.2, 2.4 Hz, 1H), 5.00 (s, 2H), 4.83 (s, 2H). 13C NMR (75 MHz, MeOD) 5 167.7, 164.8 (d, J= 14.5 Hz)„ 161.5 (d, J= 14.8 Hz), 140.7, 137.4, 127.6 (2C), 121.8, 119.2, 118.8, 115.5, 108.9, 102.4 (d, J= 29.4 Hz), 98.6 (t, J= 26.1 Hz), 55.6, 48.9. HRMS (ESI) calcd for Ci7Hi5F2N2O2 317.1096 (M + H)+, found 317.1100.
[0130] 7V-(3-Fluoro-5-(trifluoromethyl)phenyl)-2-(3-(hydroxymethyl)-lH-indol-l- yl)acetamide (PW01041). Following the similar synthetic procedure that used to prepare compound PW01022, compound PW01041 as a white solid (26 mg, 36%). 1H NMR (300 MHz, Methanol-^) 8 7.79 - 7.66 (m, 3H), 7.35 (d, J= 8.1 Hz, 1H), 7.26 (s, 1H), 7.24 - 7.08 (m, 3H), 5.02 (s, 2H), 4.83 (s, 2H). 13C NMR (75 MHz, MeOD) δ 167.9, 164.3, 161.1, 141.6 - 140.5 (m), 140.8, 137.4, 127.6,
127.6, 121.8, 119.3, 118.8, 115.6, 112.0 - 111.7 (m), 110.0, 109.6, 108.9, 107.6 - 107.3 (m), 107.10 (d, J= 3.7 Hz), 55.6, 48.9. HRMS (ESI) calcd for Ci8Hi4F4N2O2Na 389.0884 (M + Na)+, found 389.0891.
[0131] Methyl 3-(2-(3-(hydroxymethyl)-lH-indol-l-yl)acetamido)benzoate (PW01050). Following the similar synthetic procedure that used to prepare compound PW01022, compound PW01050 as a white solid (50 mg, 74%). 1 H NMR (300 MHz, DMSO-t/6) δ 10.57 (s, 1H), 8.27 (s, 1H), 7.83 (d, J= 8.1 Hz, 1H), 7.63 (dd, J= 12.3, 7.8 Hz, 2H), 7.47 (t, J= 8.0 Hz, 1H), 7.39 (d, J= 8.2 Hz, 1H), 7.29 (s, 1H), 7.13 (t, J= 7.6 Hz, 1H), 7.03 (t, J= 7.5 Hz, 1H), 5.02 (s, 2H), 4.80 (s, 1H), 4.65 (d, J= 5.2 Hz, 2H), 3.83 (s, 3H). 13C NMR (75 MHz, DMSO) 3 167.2, 166.4, 139.5, 137.4, 130.6, 129.8, 128.2, 127.5, 124.5, 124.0, 121.8, 120.1,
119.6, 119.2, 116.3, 110.1, 55.8, 52.6, 49.5. HRMS (ESI) calcd for C19H19N2O4 339.1339 (M + H)+, found 339.1343.
[0132] Methyl 2-fluoro-5-(2-(3-(hydroxymethyl)-LH-indol-l- yl)acetamido)benzoate (PW01051). Following the similar synthetic procedure that used to prepare compound PW01022, compound PW01051 as a white solid (52 mg, 73%)1.H NMR (300 MHz, DMSO-d6) δ 10.59 (s, 1H), 8.19 (dd, J= 6.5, 2.8 Hz, 1H), 7.90 - 7.77 (m, 1H), 7.62 (d, J= 7.8 Hz, 1H), 7.43 - 7.30 (m, 2H), 7.29 (s, 1H), 7.13 (t, J= 7.8 Hz, 1H), 7.03 (t, J= 7.4 Hz, 1H), 5.01 (s, 2H), 4.81 (t, J= 5.3 Hz, 1H), 4.65 (d, J= 5.3 Hz, 2H), 3.84 (s, 3H). 13C NMR (75 MHz, DMSO) 5 167.1, 164.2 (d, J= 3.4 Hz), 157.2 (d, J= 254.2 Hz), 137.4, 135.5 (d, J = 3.0 Hz), 128.2, 127.5, 125.9 (d, J= 8.7 Hz), 122.2, 121.8, 119.6, 119.2, 118.4 (d, J= 11.0 Hz), 118.0 (d, J= 23.6 Hz), 116.3, 110.1, 55.8, 52.9, 49.4. HRMS (ESI) calcd for Ci9Hi7FN2O4Na 379.1065 (M + Na)+, found 379.1071.
[0133] 3-(2-(3-( Hydroxymethyl)-1H- indol-l-yl)acetainido)benzainide (PW01053).
Following the similar synthetic procedure that used to prepare compound PW01022, compound PW01053 as a white solid (23 mg, 36%). 1H NMR (300 MHz, DMSO-d6) 8 10.47 (s, 1H), 8.03 (s, 1H), 7.92 (s, 1H), 7.77 (d, J= 8.1 Hz, 1H), 7.58 (dd, J= 18.7, 7.8 Hz, 2H), 7.35 (dd, J= 25.1, 8.8 Hz, 4H), 7.13 (t, J= 7.5 Hz, 1H), 7.03 (t, J= 13 Hz, 1H), 5.01 (s, 2H), 4.81 (d, J= 5.3 Hz, 1H), 4.65 (d, J= 5.4 Hz, 2H). 13C NMR (75 MHz, DMSO) δ 168.2, 167.0, 139.2, 137.3,
135.6, 129.1, 128.3, 127.5, 122.7, 122.3, 121.7, 119.6, 119.2, 119.2, 116.2, 110.1, 55.8, 49.5. HRMS (ESI) calcd for C18H18N3O3 324.1343 (M + H)+, found 324.1347.
[0134]N-( (3x.5x.7x)-Adaniantan-l -yl)-2-(3-(hydroxymethyl)- 1H- indol- 1 - yl)acetamide (PW01043). Following the similar synthetic procedure that used to prepare compound PW01022, compound PW01043 as a white solid (51 mg, 76%). 1 H NMR (300 MHz, Methanol-d4) δ 7.69 (d, J= 7.8 Hz, 1H), 7.31 (d, J= 8.1 Hz, 1H), 7.24 - 7.15 (m, 3H), 7.14 - 7.07 (m, 1H), 4.81 (s, 2H), 4.72 (s, 2H), 2.06 - 1.98 (m, 9H), 1.71 (d, J= 3.0 Hz, 6H). 13C NMR (75 MHz, MeOD) δ 168.1, 166.6, 137.1, 127.6, 121.7, 119.2, 118.8, 115.4, 109.0, 55.6, 51.9, 49.2, 40.9, 36.0, 29.5. HRMS (ESI) calcd for C2iH26N2O2Na 361.1886 (M + Na)+, found 361.1890.
[0135]N-( ( LS.2.S.4/?)-Bicyclo|2.2.1 |heptan-2-yl)-2-(3-(hydroxyniethyl)-1H- indol- l-yl)acetamide (PW01044). Following the similar synthetic procedure that used to prepare compound PW01022, compound PW01044 as a white solid (26 mg, 44%). 'HNMR (300 MHz, Methanol-d4) δ 7.69 (dt, J= 7.8, 1.0 Hz, 1H), 7.31 (dt, J= 8.2, 1.0 Hz, 1H), 7.26 - 7.14 (m, 3H), 7.10 (ddd, J= 8.1, 7.0, 1.2 Hz, 1H), 4.80 (s, 2H), 4.77 (s, 2H), 3.65 - 3.59 (m, 1H), 2.26 (t, J= 3.8 Hz, 1H), 2.16 (d, J = 3.8 Hz, 1H), 1.72 (ddd, J= 13.1, 8.1, 2.4 Hz, 1H), 1.50 (tdd, J= 6.0, 5.0, 4.5, 2.5 Hz, 2H), 1.39 (dt, J= 10.0, 1.9 Hz, 1H), 1.26 - 1.12 (m, 4H). 13C NMR (75 MHz, MeOD) δ 168.3, 137.2, 127.6, 121.6, 119.2, 118.8, 115.4, 109.0, 55.6, 53.0,
48.6, 42.1, 38.7, 35.5, 34.7, 27.8, 25.9. HRMS (ESI) calcd for Ci8H22N2O2Na 321.1573 (M + Na)+, found 321.1582.
[0136] \-( yclohexyl-2-(3-(hydroxymethyl)-l //-indol- 1 -yl)acetainide (PW01045).
Following the similar synthetic procedure that used to prepare compound PW01022, compound PW01045 as a white solid (33 mg, 58%). 1H NMR (300 MHz, DMSOs e) δ 8.06 (d, J= 7.8 Hz, 1H), 7.59 (d, J= 7.8 Hz, 1H), 7.31 (d, J= 8.1 Hz, 1H), 7.20 (s, 1H), 7.11 (ddd, J= 8.3, 7.0, 1.3 Hz, 1H), 7.05 - 6.96 (m, 1H), 4.78 (s, 1H), 4.72 (s, 2H), 4.63 (s, 2H), 3.61 - 3.46 (m, 1H), 1.71 (d, J= 31.4 Hz, 4H), 1.54 (d, J= 11.1 Hz, 1H), 1.22 (q, J= 12.8, 12.1 Hz, 5H). 13C NMR (75 MHz, DMSO) δ 166.7, 137.1, 128.2, 127.5, 121.6, 119.5, 119.1, 115.9, 110.1,
55.7, 49.2, 48.1, 32.8, 25.6, 24.8. HRMS (ESI) calcd for CI7H23N2O2 287.1754 (M + H)+, found 287.1757.
[0137] /V-Cyclopentyl-2-(3-(hydroxymethyl)-lH-indol-l-yl)acetamide (PW01046). Following the similar synthetic procedure that used to prepare compound PW01022, compound PW01046 as a white solid (30 mg, 56%). 1H NMR (300 MHz, Chloroforms/ and Methanol-d4) δ 7.69 (d, J= 7.8 Hz, 1H), 7.30 - 7.10 (m, 3H), 7.00 (s, 1H), 5.87 (d, J= 6.2 Hz, 1H), 4.79 (s, 2H), 4.63 (s, 2H), 4.11 (q, .7= 7.1 Hz, 1H), 1.92 - 1.72 (m, 2H), 1.50 - 1.39 (m, 4H), 1.21 - 1.06 (m, 2H). 13C NMR (75 MHz, Chloroforms/ and Methanol s/4) δ 168.1, 136.8, 127.4, 127.0, 122.8, 120.3, 119.5, 116.7, 109.2, 56.4, 51.3, 49.7, 32.5, 32.5, 23.4, 23.4. HRMS (ESI) calcd for CI6H2IN2O2 273.1598 (M + H)+, found 273.1602.
Figure imgf000040_0001
[0138] Reagents and conditions: (a) hexamethylenetetramine, H2O, AcOH, reflux, 6 h, (b) tert-butyl 2-bromoacetate, K2CO3, DMF, rt, overnight, 96%. (b) TFA, rt, 4 h, quant, (c) m-toluidine, EDCI, DMAP, DMF, rt, overnight, 82%. (d) NaBF , MeOH, 0 °C, 1 h, 79%.
[0139] Azaindole-3-carbaldehyde. To a mixture of hexamethylenetetramine (2.1 g, 15 mmol) and azaindole (1.2 g, 10 mmol) in water (6 mL) was added acetic acid (3 mL) at room temperature. The mixture was heated to reflux and stirred at reflux for 2 h until TLC indicated the end of reaction. The mixture was diluted with water at room temperature and cooled to 0 °C. The precipitates were collected by filtration, washed with cold water, and dried to get the compound.
[0140] l//-I’yrrolo|2.3-/flpyridine-3-carbaldehyde Yellow solid (760 mg, 52%). 1H NMR (300 MHz, DMSO-d6) δ 12.69 (s, 1H), 9.92 (s, 1H), 8.46 (s, 1H), 8.43 - 8.33 (m, 2H), 7.28 (dd, J= 7.8, 4.7 Hz, 1H).
[0141] 1H-Pyrrolo |3.2-/flpyridine-3-carbaldehyde Yellow solid (730 mg, 50%). 1H NMR (300 MHz, DMSO-d6) δ 12.35 (s, 1H), 10.18 (s, 1H), 8.50 (dd, J= 4.7, 1.5 Hz, 1H), 8.42 (s, 1H), 7.91 (dd, J= 8.2, 1.5 Hz, 1H), 7.27 (dd, J= 8.3, 4.6 Hz, 1H).
[0142] l//-I’yrrolo|3.2-c|pyridine-3-carbaldehyde Yellow solid (804 mg, 55%). 1H NMR (300 MHz, DMSO-d6) δ 12.42 (s, 1H), 9.99 (s, 1H), 9.28 (d, J= 1.1 Hz, 1H), 8.42 (s, 1H), 8.34 (d, J= 5.7 Hz, 1H), 7.52 (dd, J= 5.6, 1.2 Hz, 1H). [0143] l//-Pyrrolo[2,3-c|pyridine-3-carbaldehyde Yellow solid (570 mg, 39%). 1H NMR (300 MHz, DMSO-d6) δ 12.55 (s, 1H), 10.00 (s, 1H), 8.87 (d, J= 1.2 Hz, 1H), 8.50 (s, 1H), 8.32 (d, J= 5.4 Hz, 1H), 7.99 (dd, J= 5.4, 1.2 Hz, 1H).
[0144] Butyl 2-(3-formyl-l//-pyrrolo|2.3-/>|pyridin-l-yl)acetate (PW01009).
Following the similar synthetic procedure that used to prepare compound PW0985, compound PW01009 as a light yellow solid (410 mg, 79%). 'HNMR (300 MHz, Chloroform-t/) δ 10.03 (s, 1H), 8.58 (dd, J= 7.8, 1.6 Hz, 1H), 8.42 (dd, J= 4.8, 1.6 Hz, 1H), 7.95 (s, 1H), 7.34 - 7.24 (m, 2H), 5.06 (s, 2H), 1.50 (s, 9H).
[0145] tert- Butyl 2-(3-formyl-l//-pyrrolo|3.2-/>|pyridin-l-yl)acetate (PW01056).
Following the similar synthetic procedure that used to prepare compound PW0985, compound PW01056 as a light yellow solid (630 mg, 81%). 'HNMR (300 MHz, DMSO-7) δ 10.19 (s, 1H), 8.54 (dd, J= 4.7, 1.4 Hz, 1H), 8.43 (s, 1H), 8.00 (dd, J= 8.4, 1.4 Hz, 1H), 7.32 (dd, J= 8.4, 4.6 Hz, 1H), 5.22 (s, 2H), 1.42 (d, .7= 2.2 Hz, 9H).
[0146] Butyl 2-(3-formyl-l//-pyrrolo|3.2-c|pyridin-l-yl)acetate (PW01065).
Following the similar synthetic procedure that used to prepare compound PW0985, compound PW01065 as a light brown solid (600 mg, 77%). 1H NMR (300 MHz, DMSO-7) δ 10.00 (s, 1H), 9.30 (d, J= 1.0 Hz, 1H), 8.40 (d, J= 6.2 Hz, 2H), 7.61 (dd, J= 5.8, 1.1 Hz, 1H), 5.23 (s, 2H), 1.43 (s, 9H).
[0147] tert- Butyl 2-(3-formyl-l//-pyrrolo|2.3-c|pyridin-l-yl)acetate (PW01066).
Following the similar synthetic procedure that used to prepare compound PW0985, compound PW01065 as a light brown solid (560 mg, 72%). 1H NMR (300 MHz, DMSO-7) δ 10.00 (s, 1H), 8.92 (d, J= 1.1 Hz, 1H), 8.46 (s, 1H), 8.37 (d, J= 5.4 Hz, 1H), 8.01 (dd, J= 5.4, 1.1 Hz, 1H), 5.31 (s, 2H), 1.43 (s, 9H).
[0148] 2-(3-I orniyl- 1 //-pyrrolo|2.3-/?|pyridin- 1 -yl)acetic acid (PW01012).
Following the similar synthetic procedure that used to prepare compound PW0985B, compound PW01012 as a yellow solid. 1H NMR (300 MHz, DMSO- tZ6) δ 13.18 (s, 1H), 9.96 (s, 1H), 8.51 (s, 1H), 8.44 (dd, J= 7.8, 1.6 Hz, 1H), 8.40 (dd, J= 4.8, 1.7 Hz, 1H), 7.35 (dd, J= 7.8, 4.8 Hz, 1H), 5.17 (s, 2H).
[0149] 2-(3-l orniyl- 1 //-pyrrolo|3.2-/?|pyridin- 1 -yl)acetic acid (PW01059).
Following the similar synthetic procedure that used to prepare compound PW0985B, compound PW01059 as a yellow solid. 1H NMR (300 MHz, DMSO- d&) 5 10.16 (s, 1H), 8.72 (s, 1H), 8.65 (dd, J= 5.2, 1.3 Hz, 1H), 8.49 (dd, J= 8.4, 1.2 Hz, 1H), 7.61 (dd, J= 8.4, 5.2 Hz, 1H), 5.34 (s, 2H).
[0150] 2-(3-l ormyl- 1 //-pyrrolo|3.2-c|pyridin-l -yl)acetic acid (PW01067).
Following the similar synthetic procedure that used to prepare compound PW0985B, compound PW01067 as a yellow solid. 1 H NMR (300 MHz, DMSO- dd) 8 10.14 (s, 1H), 9.50 (s, 1H), 8.86 (s, 1H), 8.72 (d, J= 6.7 Hz, 1H), 8.36 (d, J = 6.8 Hz, 1H), 5.46 (s, 2H).
[0151] 2-(3-l ormyl- 1 //-pyrrolo|2.3-c|pyridin-l -yl)acetic acid (PW01082).
Following the similar synthetic procedure that used to prepare compound PW0985B, compound PW01082 as a yellow solid.
[0152] 2-(3-( I lydroxymethyl)- 1 //-pyrrolo|2.3-/?|pyridin- 1 -yl)- N-m( -t tolyl)acetamide (PW01016). In a round-bottom flask, compound PW01012 (41 mg, 0.2 mmol) was dissolved in 2 mL of anhydrous DMF, and the solution was cooled to 0 °C with an ice bath. m-Toluidine (43 mg, 0.4 mmol), EDCI (77 mg, 0.4 mmol), DMAP (49 mg, 0.4 mmol) were added to the solution at 0 °C. Then removed the ice bath and the mixture solution was stirred at rt overnight until TLC indicated the end of reaction. Then poured the solution into ice water (10 mL) and extracted with EtOAc (10 mL x 3). The organic phase was washed with brine, dried over Na2SO4, and then concentrated under reduced pressure. The residue was used directly to the next step. In a round-bottom flask, the residue was dissolved in 2 mL of MeOH, and the solution was cooled to 0 °C with an ice bath. NaBH4 (8 mg, 0.4 mmol) was slowly added to solution in a small portion and the solution was continually stirred for 1 h until TLC indicated the end of reaction. Then poured the solution into ice water (10 mL) and extracted with EtOAc (10 mL x 3). The organic phase was washed with brine, dried over Na2SO4, and then concentrated under reduced pressure. The residue was purified by flash column chromatography (DCM/MeOH = 50/1) to get the PW01016 as a white solid (22 mg, 39%). 'HNMR (300 MHz, DMSO-d6) δ 10.27 (s, 1H), 8.21 (d, J= 4.6 Hz, 1H), 8.03 (d, J= 7.8 Hz, 1H), 7.40 (dd, J= 20.6, 9.1 Hz, 3H), 7.25 - 7.03 (m, 2H), 6.87 (d, J= 7.5 Hz, 1H), 5.09 (s, 2H), 4.93 (t, J= 5.4 Hz, 1H), 4.66 (d, J= 5.5 Hz, 2H), 2.26 (s, 3H). 13C NMR (75 MHz, DMSO) δ 166.8, 166.6, 148.2, 142.7, 139.2, 138.4, 129.1, 128.4, 127.9, 124.5, 120.1, 119.6, 116.7, 115.8, 114.6, 55.8, 47.3, 21.6. HRMS (ESI) calcd for C17H18N3O2296.1394 (M + H)+, found 296.1399.
[0153] 2-(3-( Hydroxymethyl)- 1 //-pyrrolo|3.2-/?|pyridin- 1 -yl)- N-m( -t tolyl)acetamide (PW01061). Following the similar synthetic procedure that used to prepare compound PW01016, compound PW01061 as a white solid (33 mg, 56%). 'HNMR (300 MHz, DMSO-d6) δ 10.29 (s, 1H), 8.42 - 8.24 (m, 1H), 7.80 (d, J= 8.2 Hz, 1H), 7.57 (s, 1H), 7.47 - 7.28 (m, 2H), 7.15 (dt, J= 12.9, 6.3 Hz, 2H), 6.87 (d, J= 7.5 Hz, 1H), 5.05 (s, 2H), 4.85 (s, 1H), 4.73 (d, J= 5.0 Hz, 2H), 2.25 (s, 3H). 13C NMR (75 MHz, DMSO) δ 166.5, 144.8, 142.4, 139.1, 138.5, 131.8, 130.1, 129.1, 124.7, 120.2, 117.5, 116.8, 116.7, 54.5, 49.7, 21.6. HRMS (ESI) calcd for C17H18N3O2 296.1394 (M + H)+, found 296.1395.
[0154] Ethyl 3-(2-(3-(hydroxymethyl)-l//-pyrrolo|3.2-/>|pyridin-l- yl)acetamido)benzoate (PW01062). Following the similar synthetic procedure that used to prepare compound PW01016, compound PW01062 as a white solid (26 mg, 37%). 'HNMR (300 MHz, DMSO-d6) δ 10.61 (s, 1H), 8.39 - 8.19 (m, 2H), 7.82 (d, J= 8.0 Hz, 2H), 7.70 - 7.54 (m, 2H), 7.46 (t, J= 8.1 Hz, 1H), 7.12 (dd, J= 8.3, 4.7 Hz, 1H), 5.10 (s, 2H), 4.86 (t, J= 5.5 Hz, 1H), 4.73 (d, J= 4.8 Hz, 2H), 4.29 (q, J= 7.1 Hz, 2H), 1.29 (t, J= 7.2 Hz, 3H). 13C NMR (75 MHz, DMSO) δ 167.0, 165.9, 144.8, 142.4, 139.5, 131.7, 130.9, 130.2, 129.8, 124.6, 124.0, 120.0, 117.5, 116.8, 116.7, 61.3, 54.5, 49.6, 14.6. HRMS (ESI) calcd for Ci9Hi9N3O4Na 376.1268 (M + Na)+, found 376.1274.
[0155] 2-(3-( Hydroxymethyl)- 1 //-pyrrolo|3.2-c|pyridin-l -yl)-N-( m -t tolyl)acetamide (PW01076). Following the similar synthetic procedure that used to prepare compound PW01016, compound PW01076 as a white solid (44 mg, 75%).1H NMR (300 MHz, DMSO-d6) δ 10.30 (s, 1H), 8.88 (s, 1H), 8.19 (d, J= 5.8 Hz, 1H), 7.49 - 7.29 (m, 4H), 7.19 (t, J= 7.8 Hz, 1H), 6.88 (d, J= 7.5 Hz, 1H), 5.03 (d, J= 3.8 Hz, 3H), 4.69 (d, J= 5.3 Hz, 2H), 2.26 (s, 3H). 13C NMR (75 MHz, DMSO) 5 166.3, 142.6, 141.0, 140.8, 139.0, 138.5, 129.1, 128.9, 124.7, 124.2, 120.1, 116.8, 116.5, 105.8, 55.5, 49.2, 21.6. HRMS (ESI) calcd for Ci7Hi8N3O2 296.1394 (M + H)+, found 296.1395.
[0156] Ethyl 3-(2-(3-( Hydroxymethyl)- l//-pyrrolo|3.2-c|pyridin-l- yl)acetamido)benzoate (PW01074). Following the similar synthetic procedure that used to prepare compound PW01016, compound PW01074 as a white solid (43 mg, 61%). 'HNMR (300 MHz, DMSO-d6) δ 10.61 (s, 1H), 8.89 (s, 1H), 8.30 - 8.16 (m, 2H), 7.89 - 7.78 (m, 1H), 7.66 (dt, J= 7.8, 1.3 Hz, 1H), 7.53 - 7.40 (m, 2H), 7.36 (s, 1H), 5.08 (s, 2H), 5.03 (t, J= 5.4 Hz, 1H), 4.70 (d, J= 5.4 Hz, 2H), 4.30 (q, J= 7.1 Hz, 2H), 1.30 (t, J= 7.1 Hz, 3H). 13C NMR (75 MHz, DMSO) 5
166.8, 165.9, 142.6, 141.0, 140.8, 139.5, 130.9, 129.8, 128.9, 124.6, 124.2, 124.0, 120.0, 116.5, 105.8, 61.3, 55.5, 49.1, 14.6. HRMS (ESI) calcd for C19H20N3O4 354.1448 (M + H)+, found 354.1460.
[0157] 2-(3-( I lydroxymethyl)- 1 //-pyrrolo|2.3-c|pyridin-l -yl)-N-(in- tolyl)acetamide (PW01083). Following the similar synthetic procedure that used to prepare compound PW01016, compound PW01083 as a white solid (24 mg, 41%).1H NMR (300 MHz, DMSO) δ 10.35 (s, 1H), 8.79 (s, 1H), 8.14 (s, 1H), 7.83 - 7.09 (m, 5H), 6.90 (s, 1H), 5.45 - 4.84 (m, 3H), 4.66 (s, 2H), 2.27 (s, 3H). 13C NMR (75 MHz, DMSO) 5 166.4, 139.0, 138.5, 138.1, 134.4, 133.6, 132.0,
131.8, 129.2, 124.7, 120.2, 116.8, 115.9, 114.2, 55.3, 49.7, 21.6. HRMS (ESI) calcd for Ci7Hi8N3O2 296.1394 (M + H)+, found 296.1395
[0158] Ethyl 3-(2-(3-( hydroxy met hyl )- 1 //-pyrrolo [2,3-c] pyridin-1- yl)acetamido)benzoate (PW01084). Following the similar synthetic procedure that used to prepare compound PW01016, compound PW01084 as a white solid (28 mg, 40%). 1H NMR (300 MHz, DMSO) δ 10.62 (s, 1H), 8.77 (s, 1H), 8.37 - 7.99 (m, 2H), 7.94 - 7.36 (m, 5H), 5.33 - 4.84 (m, 3H), 4.63 (s, 2H), 4.27 (s, 2H), 1.27 (s, 3H). 13C NMR (75 MHz, DMSO) 5 166.9, 165.9, 139.5, 138.1, 134.4,
133.6, 132.0, 131.8, 130.9, 129.8, 124.6, 124.0, 120.1, 116.0, 114.2, 61.3, 55.3,
49.6, 14.6. HRMS (ESI) calcd for C19H20N3O4 354.1448 (M + H)+, found 354.1460.
Figure imgf000044_0001
[0159] Reagents and conditions: (a) tert-butyl 2-bromoacetate, K2CO3, DMF, rt, overnight, 90%. (b) TFA, rt, 4 h, quant, (c) (1) m-toluidine, EDCI, DMAP, DMF, rt, overnight; (2) NaBH4, MeOH, 0 °C, 1 h, 79%. [0160] tert- Butyl 2-(5-cyano-3-formyl-lZ7-indol-l-yl)acetate (PW01010).
Following the similar synthetic procedure that used to prepare compound PW0985, compound PW01010 as a white solid (510 mg, 90%). 1H NMR (300 MHz, Chloroform-t/) 5 10.07 (s, 1H), 8.71 (dd, J= 1.6, 0.8 Hz, 1H), 7.88 (s, 1H), 7.60 (dd, J= 8.6, 1.6 Hz, 1H), 7.38 (dd, J= 8.6, 0.7 Hz, 1H), 4.86 (s, 2H), 1.48 (s, 9H).
[0161] 2-(5-Cyano-3-formyl-lH-indol-l-yl)acetic acid (PW01012). Following the similar synthetic procedure that used to prepare compound PW0985B, compound PW01012 as a white solid (quant.). 'HNMR (300 MHz, DMSO-d6) δ 13.18 (s, 1H), 9.96 (s, 1H), 8.51 (s, 1H), 8.44 (dd, J= 7.8, 1.6 Hz, 1H), 8.40 (dd, J= 4.8,
1.7 Hz, 1H), 7.35 (dd, J= 7.8, 4.8 Hz, 1H), 5.17 (s, 2H).
[0162] 2-(5-Cyano-3-(hydr oxymethyl)- 1H- indol- 1 -y 1
Figure imgf000045_0001
oly 1 )acet a m ide
(PW01017). Following the similar synthetic procedure that used to prepare compound PW0989, compound PW01017 as a white solid (41 mg, 64%). 1H NMR (300 MHz, DMSO-d6) δ 10.29 (s, 1H), 8.13 (s, 1H), 7.60 (d, J= 8.6 Hz, 1H), 7.49 (d, J= 6.7 Hz, 2H), 7.42 (s, 1H), 7.36 (d, J= 8.4 Hz, 1H), 7.19 (t, J=
7.8 Hz, 1H), 6.88 (d, J= 7.5 Hz, 1H), 5.09 (s, 2H), 5.00 (t, J= 5.6 Hz, 1H), 4.68 (d, J= 5.5 Hz, 2H), 2.26 (s, 3H). 13C NMR (75 MHz, DMSO) δ 166.2, 139.1, 139.0, 138.5, 130.6, 129.1, 127.2, 125.3, 124.7, 124.5, 121.1, 120.2, 117.4, 116.8, 111.7, 101.3, 55.4, 49.6, 21.6. HRMS (ESI) calcd for C19H18N3O2 320.1394 (M + H)+, found 320.1398.
Figure imgf000045_0002
PW01068 PW01069 PW01072
Reagents and conditions: (a) methyl 2-bromopropanoate, K2CO3, DMF, rt, overnight, 94%. (b) LiOH, MeOH, rt, overnight, 92%. (c) (1) m-toluidine, EDCI, DMAP, DMF, rt, overnight; (2) NaBH4, MeOH, 0 °C, 1 h, 60%.
[0163] Methyl 2-(3-formyl-lH-indol-l-yl)propanoate (PW01068). Following the similar synthetic procedure that used to prepare compound PW0985, compound PW01068 as a white solid (2.17 g, 94%). 'HNMR (300 MHz, Chloroform^/) δ 10.08 (s, 1H), 8.42 - 8.28 (m, 1H), 7.95 (s, 1H), 7.42 - 7.31 (m, 3H), 5.23 (q, J = 13 Hz, 1H), 3.77 (s, 3H), 1.92 (d, J= 13 Hz, 3H).
[0164] 2-(3-Formyl-lH-indol-l-yl)propanoic acid (PW01069). Following the similar synthetic procedure that used to prepare compound PW0985, compound PW01069 as a white solid (1.0 g, 90%). 'HNMR (300 MHz, DMSO-d6) δ 13.23 (s, 1H), 9.95 (s, 1H), 8.47 (s, 1H), 8.26 - 8.01 (m, 1H), 7.71 - 7.49 (m, 1H), 7.41 - 7.16 (m, 2H), 5.50 (q, J= 7.2 Hz, 1H), 1.81 (d, J = 7.3 Hz, 3H).
[0165] 2-(3-(Hydroxymethyl)-1H- indol-l-yl)-\-(m -ttolyl)propanamide (PW01072). Following the similar synthetic procedure that used to prepare compound PW0989, compound PW01072 as a white solid (35 mg, 60%). 1H NMR (300 MHz, DMSO-d6) δ 10.30 (s, 1H), 7.60 (d, J= 7.9 Hz, 1H), 7.50 (d, J= 8.2 Hz, 1H), 7.40 (dd, J= 18.4, 8.9 Hz, 3H), 7.23 - 6.99 (m, 3H), 6.87 (d, J= 7.5 Hz, 1H), 5.30 (q, J= 6.6, 5.9 Hz, 1H), 4.82 (t, J= 5.5 Hz, 1H), 4.65 (d, J= 5.3 Hz, 2H), 2.25 (s, 3H), 1.71 (d, J = 7.1 Hz, 3H). 13C NMR (75 MHz, DMSO) δ
169.6, 138.9, 138.5, 136.7, 129.1, 127.6, 124.8, 124.6, 121.7, 120.4, 119.7, 119.4, 117.0, 116.4, 110.0, 55.9, 54.5, 21.6, 18.1. HRMS (ESI) calcd for Ci9H20N2O2Na 331.1417 (M + Na)+, found 331.1422.
[0166] Ethyl 3-(2-(3-(hydroxymethyl)-1H- indol-l-yl)propananiido)benzoate (PW01073). Following the similar synthetic procedure that used to prepare compound PW0989, compound PW01073 as a white solid (38 mg, 52%). 1H NMR (300 MHz, DMSO-d6) δ 10.62 (s, 1H), 8.23 (s, 1H), 7.87 (d, J= 8.1 Hz, 1H), 7.63 (dd, J= 12.9, 7.8 Hz, 2H), 7.47 (q, J= 8.2, 7.6 Hz, 3H), 7.14 (t, J= 1.1 Hz, 1H), 7.03 (t, J= 1A Hz, 1H), 5.32 (d, J= 1A Hz, 1H), 4.82 (s, 1H), 4.65 (d, J = 4.2 Hz, 2H), 4.29 (q, J= 1A Hz, 2H), 1.73 (d, J= 6.9 Hz, 3H), 1.30 (t, J= 1A Hz, 3H). 13C NMR (75 MHz, DMSO) δ 170.0, 165.9, 139.4, 136.7, 130.9, 129.8,
127.6, 124.8, 124.7, 124.2, 121.8, 120.2, 119.8, 119.5, 116.5, 110.0, 61.3, 55.9,
54.6, 18.0, 14.6. HRMS (ESI) calcd for Ci9H20N2O2Na 389.1472 (M + Na)+, found 389.1479.
[0167] It is to be understood that the foregoing descriptions are exemplary, and thus do not restrict the scope of the invention.
LIST OF EMBODIMENTS The following is a non-limiting list of embodiments:
1. A compound of Formula I or a pharmaceutically acceptable salt thereof, wherein:
Figure imgf000047_0001
Formula I
R1 is H, alkyl, alkoxy, halogen, cyano, amino, hydroxyl, NO2, CF3 or -OCF3;
A is an aryl ring or a heteroaryl ring (e.g., pyridine), wherein ring A is fused to the C4 and C5 of the 5 -membered N-heterocycle ring moiety of Formula I, e,g, as shown the compounds exemplified below;
R2 is H, alkyl, alkoxy, halogen, -CO2R10, -CChMe or hydroxyl;
R3 is H, alkyl, alkoxy, halogen or hydroxyl; or R2 and R3 together form a 3-6 membered cycloalkyl ring;
R4 is H, alkyl, alkoxy, halogen, cyano, hydroxyl or NT1!2;
T1 is H, alkyl;
T2 is independently chosen from: H, alkyl, cycloalkyl, benzyl, allyl, hydroxyl-alkyl; or T1 and T2 together form a 4-12 membered cycloalkyl ring or cycloheteroalkyl ring, wherein the 4-12 membered cycloalkyl ring or cycloheteroalkyl ring is optionally substituted with one or more groups selected independently from alkyl, cycloalkyl, alkenyl, aryl, heteroaryl, benzyl, alkoxy, halogen, cyan, nitro, amino, hydroxyl, CHF2, CF3 or -OCF3; n = 0, 1, 2, 3, or 4;
R5 is H, alkyl, aryl, cycloalkyl (e.g., is a bridged 6-14-membered bicyclic cycloalkyl, with 1-3 carbon length “bridge”); or heteroaryl, wherein each ring is optionally substituted with one or more groups selected independently from: H, alkyl, cycloalkyl, alkenyl, aryl, heteroaryl, benzyl, alkoxy (e.g., OMe, 3-OMe), halogen, cyano (e.g., 3-CN), nitro, amino, amido (e.g., 3-amido hydroxyl, -COOR8 (e.g., -COOMe), -CONHR9, CHF2, CF3 or -OCF3, wherein alkyl is optionally substituted with one or more substituents chosen from: hydroxyl, cyan, amino, or halogen; R6, and R7 are independently chosen from H, alkyl, F, CHF2, CF3, etc., or R6 and R7 taken together form a 3-7 membered ring (e.g., cyclopropane);
R8 is independently chosen from: H, alkyl, aryl, cycloalkyl, benzyl; and
R9 is independently chosen from: H, alkyl, aryl, cycloalkyl, benzyl, or substituted benzyl.
R10 is alkyl (e.g., Cl-C6-alkyl), aryl, or alkylaryl.
2. The compound of embodiment 1, wherein R1 is H and CN.
3. The compound of embodiment 1, wherein R2 is H and -CChMe.
4. The compound of embodiment 1, wherein R2 and R3 are H. 5. The compound of embodiment 1, wherein R4 is OH.
6. The compound of Formula (I) wherein R4 is NT1N2.
7. The compound of embodiment 1, wherein n = 0, 1, 2, or 3.
8. The compound of embodiment 1, wherein: R1, R2 and R3 are H.
9. The compound of embodiment 1, wherein A is the aryl ring or pyridyl. 10. The compound of embodiment 1, wherein the compound structure is any one of the following:
Figure imgf000048_0001
Figure imgf000049_0001
Figure imgf000050_0001
Figure imgf000051_0001
Figure imgf000052_0001
Figure imgf000053_0001
Figure imgf000054_0001
Figure imgf000055_0001
Figure imgf000056_0001
Figure imgf000057_0001
Figure imgf000058_0001
Figure imgf000059_0001
Figure imgf000060_0001
Figure imgf000061_0001
A compound of the Formula (II) or a pharmaceutically acceptable salt thereof, wherein:
Figure imgf000062_0001
Formula II
R4 is hydroxyl or NT1!2; wherein T1 is H or alkyl; and wherein T2 is independently chosen from H, alkyl, cycloalkyl, benzyl, allyl, hydroxyl-alkyl; or T1 and T2 together form a 4-12 membered cycloalkyl ring or cycloheteralkyl ring, wherein the 4-12 membered cycloalkyl ring is optionally substituted with one or more groups selected independently from alkyl, cycloalkyl, alkenyl, aryl, heteroaryl, benzyl, alkoxy, halogen, cyan, nitro, amino, hydroxyl, CHF2, CF3 or -OCF3;
R5 is an aryl ring or a cycloalkyl ring, wherein each ring is optionally substituted with one or more groups selected independently from: H, alkyl, cycloalkyl, alkenyl, aryl, heteroaryl, benzyl, alkoxy, halogen, cyano, nitro, amino, hydroxyl, -COOR8, -CONHR9, CHF2, CF3 or -OCF3, wherein alkyl is optionally substituted with one or more chosen substituents chosen from: hydroxyl, cyano, amino, or halogen;
R8 is independently chosen from: H, alkyl, aryl, cycloalkyl, or benzyl; and
R8 is independently chosen from: H, alkyl, aryl, cycloalkyl, benzyl, or substituted benzyl. The compound of embodiment 11, wherein R4 is hydroxyl. The compound of embodiment 11, wherein R4 is NTXT2. The compound of embodiment 13, wherein T1 is H. The compound of embodiment 11, wherein R5 is an aryl ring. The compound of embodiment 15, wherein the aryl ring is substituted with one or more substituents selected independently from: H, alkyl, benzyl, alkoxy, halogen, cyano, nitro, amino, hydroxyl, -COOR8, -CONHR9, CHF2, CF3 or -OCF3, wherein alkyl is optionally substituted with one or more chosen substituents chosen from: hydroxyl, cyano, amino, or halogen;
R8 is H, alkyl; and R9 is independently chosen from: H, alkyl, aryl, cycloalkyl, benzyl, or substituted benzyl.
17. The compound of embodiment 15, wherein the R5 aryl ring is substituted with alkyl (e.g., at the 2-, 3-, or 4- position of the aryl ring, such as 3-Me, 3-Et, 2 -Me, or 4-Me).
18. A compound of Formula III, or a pharmaceutically acceptable salt thereof, wherein:
Figure imgf000063_0001
Formula III wherein A, n, R1, R4, and R5 are as defined for the compound of Formula I. 19. A compound of Formula IV, or a pharmaceutically acceptable salt thereof, wherein:
Figure imgf000063_0002
Formula IV wherein A, n, R1, and R5 are defined as for the compound of Formula I.
20. A compound of Formula V, or a pharmaceutically acceptable salt thereof, wherein:
Figure imgf000064_0001
Formula V wherein A, n, R1, R5, T1, and T2 are defined as for the compound of Formula I.
21. A compound of Formula VI, or a pharmaceutically acceptable salt thereof, wherein:
Figure imgf000064_0002
Formula VI wherein R1, R4, and R5 are defined as for the compound of Formula I.
22. A compound of Formula VII, or a pharmaceutically acceptable salt thereof, wherein:
Figure imgf000064_0003
Formula VII wherein R1 and R5are defined as for the compound of Formula I.
23. A compound of Formula VIII, or a pharmaceutically acceptable salt thereof, wherein:
Figure imgf000065_0001
Formula VIII wherein R1, R5, T1, and T2 are defined as for the compound of Formula I.
24. A compound of Formula IX, or a pharmaceutically acceptable salt thereof, wherein:
Figure imgf000065_0002
Formula IX wherein R1, R5, T1, and T2 are defined as for the compound of Formula I.
25. A compound of Formula X, or a pharmaceutically acceptable salt thereof, wherein:
Figure imgf000065_0003
Formula X wherein A is a heteroaryl ring, n, R1, R4 and R5 are defined as for the compound of
Formula I.
26. A method of treating a disease or condition in a patient comprising administering to the patient a therapeutically effective amount of a compound of any of the preceding embodiments or a pharmaceutically acceptable salt thereof. 27. The method of embodiment 26, wherein treatment of the disease or condition involves modulating a FGF14:NAV1.6 channel complex protein-protein interaction.
28. The method of embodiment 26, wherein said compound modulates voltage-gated Na+ (Nav) channels and their isoforms (such as Navi.6).
29. The method of embodiment 26, wherein said compound modulates voltage-gated sodium channels and their accessory regulator proteins complex protein-protein interactions.
30. The method of embodiment 26, wherein said compound modulates voltage-gated sodium channel accessory regulator proteins (such as intracellular fibroblast growth factors (e.g., FGF14, FGF13, FGF12 and FGF11)).
31. The method of embodiment 26, said compound modulates FGF14:Navl.6 channel complex formation and increases Navi.6 channel availability (and medium spiny neuron (MSN) firing).
32. The method of embodiment 26, said compound modulates reward-related behaviors within the mesocorticolimbic circuit.
33. The method of embodiment 26, wherein the disease or condition is a central nervous system chosen from any of brain disorders, neurological disorders, psychiatric disorders, substance abuse disorders, neuroinflammation, or pain.
34. The method of embodiment 26, wherein the compound of Formula (I) is compound PW0989.
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Claims

CLAIMS We claim:
1. A compound of Formula I or a pharmaceutically acceptable salt thereof, wherein:
Figure imgf000082_0001
Formula I
R1 is H, alkyl, alkoxy, halogen, cyano, amino, hydroxyl, NO2, CF3 or -OCF3;
A is an aryl ring or a heteroaryl ring (e.g., pyridine), wherein ring A is fused to the C4 and C5 of the 5-membered N-heterocycle ring moiety of Formula I, e,g, as shown the compounds exemplified below;
R2 is H, alkyl, alkoxy, halogen, -CO2R10, -CCLMe or hydroxyl;
R3 is H, alkyl, alkoxy, halogen or hydroxyl; or R2 and R3 together form a 3-6 membered cycloalkyl ring;
R4 is H, alkyl, alkoxy, halogen, cyano, hydroxyl or NT1T2;
T1 is H, alkyl;
T2 is independently chosen from: H, alkyl, cycloalkyl, benzyl, allyl, hydroxyl-alkyl; or T1 and T2 together form a 4-12 membered cycloalkyl ring or cycloheteroalkyl ring, wherein the 4-12 membered cycloalkyl ring or cycloheteroalkyl ring is optionally substituted with one or more groups selected independently from alkyl, cycloalkyl, alkenyl, aryl, heteroaryl, benzyl, alkoxy, halogen, cyan, nitro, amino, hydroxyl, CHF2, CF3 or -OCF3; n = 0, 1, 2, 3, or 4;
R5 is H, alkyl, aryl, cycloalkyl (e.g., is a bridged 6-14-membered bicyclic cycloalkyl, with 1-3 carbon length “bridge”); or heteroaryl, wherein each ring is optionally substituted with one or more groups selected independently from: H, alkyl, cycloalkyl, alkenyl, aryl, heteroaryl, benzyl, alkoxy (e.g., OMe, 3-OMe), halogen, cyano (e.g., 3-CN), nitro, amino, amido (e.g., 3-amido hydroxyl, -COOR8 (e.g., -COOMe), -CONHR9, CHF2, CF3 or -OCF3, wherein alkyl is optionally substituted with one or more substituents chosen from: hydroxyl, cyan, amino, or halogen;
R6, and R7 are independently chosen from H, alkyl, F, CHF2, CF3, etc., or R6 and R7 taken together form a 3-7 membered ring (e.g., cyclopropane); R8 is independently chosen from: H, alkyl, aryl, cycloalkyl, benzyl; and
R9 is independently chosen from: H, alkyl, aryl, cycloalkyl, benzyl, or substituted benzyl.
R10 is alkyl (e.g., Cl-C6-alkyl), aryl, or alkylaryl.
2. The compound of claim 1, wherein R1 is H and CN.
3. The compound of claim 1, wherein R2 is H and -CChMe.
4. The compound of claim 1, wherein R2 and R3 are H.
5. The compound of claim 1, wherein R4 is OH.
6. The compound of Formula (I) wherein R4 is NT1N2.
7. The compound of claim 1, wherein n = 0, 1, 2, or 3.
8. The compound of claim 1, wherein: R1, R2 and R3 are H.
9. The compound of claim 1, wherein A is the aryl ring or pyridyl.
10. The compound of claim 1, wherein the compound structure is any one of the following:
Figure imgf000083_0001
Figure imgf000084_0001
Figure imgf000085_0001
Figure imgf000086_0001
Figure imgf000087_0001
Figure imgf000088_0001
Figure imgf000089_0001
Figure imgf000090_0001
Figure imgf000091_0001
Figure imgf000092_0001
Figure imgf000093_0001
Figure imgf000094_0001
Figure imgf000095_0001
Figure imgf000096_0001
11. A compound of the Formula (II) or a pharmaceutically acceptable salt thereof, wherein:
Figure imgf000097_0001
Formula II
R4 is hydroxyl or NT1!2; wherein T1 is H or alkyl; and wherein T2 is independently chosen from H, alkyl, cycloalkyl, benzyl, allyl, hydroxyl-alkyl; or T1 and T2 together form a 4-12 membered cycloalkyl ring or cycloheteralkyl ring, wherein the 4-12 membered cycloalkyl ring is optionally substituted with one or more groups selected independently from alkyl, cycloalkyl, alkenyl, aryl, heteroaryl, benzyl, alkoxy, halogen, cyan, nitro, amino, hydroxyl, CHF2, CF3 or -OCF3;
R5 is an aryl ring or a cycloalkyl ring, wherein each ring is optionally substituted with one or more groups selected independently from: H, alkyl, cycloalkyl, alkenyl, aryl, heteroaryl, benzyl, alkoxy, halogen, cyano, nitro, amino, hydroxyl, -COOR8, -CONHR9, CHF2, CF3 or -OCF3, wherein alkyl is optionally substituted with one or more chosen substituents chosen from: hydroxyl, cyano, amino, or halogen;
R8 is independently chosen from: H, alkyl, aryl, cycloalkyl, or benzyl; and
R8 is independently chosen from: H, alkyl, aryl, cycloalkyl, benzyl, or substituted benzyl.
12. The compound of claim 11, wherein R4 is hydroxyl.
13. The compound of claim 11, wherein R4 is NTXT2.
14. The compound of claim 13, wherein T1 is H.
15. The compound of claim 11, wherein R5 is an aryl ring.
16. The compound of claim 15, wherein the aryl ring is substituted with one or more substituents selected independently from: H, alkyl, benzyl, alkoxy, halogen, cyano, nitro, amino, hydroxyl, -COOR8, -CONHR9, CHF2, CF3 or -OCF3, wherein alkyl is optionally substituted with one or more chosen substituents chosen from: hydroxyl, cyano, amino, or halogen;
R8 is H, alkyl; and R9 is independently chosen from: H, alkyl, aryl, cycloalkyl, benzyl, or substituted benzyl.
17. The compound of claim 15, wherein the R5 aryl ring is substituted with alkyl (e.g., at the 2-, 3-, or 4- position of the aryl ring, such as 3-Me, 3-Et, 2 -Me, or 4-Me).
18. A compound of Formula III, or a pharmaceutically acceptable salt thereof, wherein:
Figure imgf000098_0001
Formula III wherein A, n, R1, R4, and R5 are as defined for the compound of Formula I.
19. A compound of Formula IV, or a pharmaceutically acceptable salt thereof, wherein:
Figure imgf000098_0002
Formula IV wherein A, n, R1, and R5 are defined as for the compound of Formula I.
20. A compound of Formula V, or a pharmaceutically acceptable salt thereof, wherein:
Figure imgf000099_0001
Formula V wherein A, n, R1, R5, T1, and T2 are defined as for the compound of Formula I.
21. A compound of Formula VI, or a pharmaceutically acceptable salt thereof, wherein:
Figure imgf000099_0002
Formula VI wherein R1, R4, and R5 are defined as for the compound of Formula I.
22. A compound of Formula VII, or a pharmaceutically acceptable salt thereof, wherein:
Figure imgf000099_0003
Formula VII wherein R1 and R5are defined as for the compound of Formula I.
23. A compound of Formula VIII, or a pharmaceutically acceptable salt thereof, wherein:
Figure imgf000100_0001
Formula VIII wherein R1, R5, T1, and T2 are defined as for the compound of Formula I.
24. A compound of Formula IX, or a pharmaceutically acceptable salt thereof, wherein:
Figure imgf000100_0002
Formula IX wherein R1, R5, T1, and T2 are defined as for the compound of Formula I.
25. A compound of Formula X, or a pharmaceutically acceptable salt thereof, wherein:
Figure imgf000100_0003
Formula X wherein A is a heteroaryl ring, n, R1, R4 and R5 are defined as for the compound of
Formula I.
26. A method of treating a disease or condition in a patient comprising administering to the patient a therapeutically effective amount of a compound of any of the preceding claims or a pharmaceutically acceptable salt thereof.
27. The method of claim 26, wherein treatment of the disease or condition involves modulating a FGF14:NAV1.6 channel complex protein-protein interaction.
28. The method of claim 26, wherein said compound modulates voltage-gated Na+ (Nav) channels and their isoforms (such as Navi.6).
29. The method of claim 26, wherein said compound modulates voltage-gated sodium channels and their accessory regulator proteins complex protein-protein interactions.
30. The method of claim 26, wherein said compound modulates voltage-gated sodium channel accessory regulator proteins (such as intracellular fibroblast growth factors (e.g., FGF14, FGF13, FGF12 and FGF11)).
31. The method of claim 26, said compound modulates FGF14:Navl.6 channel complex formation and increases Navi.6 channel availability (and medium spiny neuron (MSN) firing).
32. The method of claim 26, said compound modulates reward-related behaviors within the mesocorticolimbic circuit.
33. The method of claim 26, wherein the disease or condition is a central nervous system chosen from any of brain disorders, neurological disorders, psychiatric disorders, substance abuse disorders, neuroinflammation, or pain.
34. The method of claim 26, wherein the compound of Formula (I) is compound PW0989.
PCT/US2024/032668 2023-06-05 2024-06-05 Non-peptide small molecule fgf14:nav1.6 channel complex protein-protein interaction modulators Pending WO2024254218A2 (en)

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