ATE321308T1 - Verfahren zur auswahl von oligonukleotiden mit niedriger kreuzhybridisierung - Google Patents

Verfahren zur auswahl von oligonukleotiden mit niedriger kreuzhybridisierung

Info

Publication number: ATE321308T1
Authority: AT; Austria
Prior art keywords: methods; present; targets; low cross; cross hybridization
Prior art date: 1999-01-25

Application number

AT00914442T

Other languages

English (en)

Inventor

Brooke P Anderson

Donald D Montgomery

Original Assignee

Combimatrix Corp

Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)

1999-01-25

Filing date

2000-01-25

Publication date

2006-04-15

2000-01-25 Application filed by Combimatrix Corp filed Critical Combimatrix Corp

2006-04-15 Application granted granted Critical

2006-04-15 Publication of ATE321308T1 publication Critical patent/ATE321308T1/de

Links

238000000034 method Methods 0.000 title abstract 5
108091034117 Oligonucleotide Proteins 0.000 title 1
JLCPHMBAVCMARE-UHFFFAOYSA-N [3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methyl [5-(6-aminopurin-9-yl)-2-(hydroxymethyl)oxolan-3-yl] hydrogen phosphate Polymers Cc1cn(C2CC(OP(O)(=O)OCC3OC(CC3OP(O)(=O)OCC3OC(CC3O)n3cnc4c3nc(N)[nH]c4=O)n3cnc4c3nc(N)[nH]c4=O)C(COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3CO)n3cnc4c(N)ncnc34)n3ccc(N)nc3=O)n3cnc4c(N)ncnc34)n3ccc(N)nc3=O)n3ccc(N)nc3=O)n3ccc(N)nc3=O)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cc(C)c(=O)[nH]c3=O)n3cc(C)c(=O)[nH]c3=O)n3ccc(N)nc3=O)n3cc(C)c(=O)[nH]c3=O)n3cnc4c3nc(N)[nH]c4=O)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)O2)c(=O)[nH]c1=O JLCPHMBAVCMARE-UHFFFAOYSA-N 0.000 title 1
238000009396 hybridization Methods 0.000 title 1
239000000523 sample Substances 0.000 abstract 2

Classifications

- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
- G16B25/20—Polymerase chain reaction [PCR]; Primer or probe design; Probe optimisation
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression

Landscapes

Physics & Mathematics (AREA)
Health & Medical Sciences (AREA)
Life Sciences & Earth Sciences (AREA)
Biophysics (AREA)
Genetics & Genomics (AREA)
Molecular Biology (AREA)
Engineering & Computer Science (AREA)
Bioinformatics & Cheminformatics (AREA)
Bioinformatics & Computational Biology (AREA)
Biotechnology (AREA)
Evolutionary Biology (AREA)
General Health & Medical Sciences (AREA)
Medical Informatics (AREA)
Spectroscopy & Molecular Physics (AREA)
Theoretical Computer Science (AREA)
Chemical & Material Sciences (AREA)
Chemical Kinetics & Catalysis (AREA)
Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Saccharide Compounds (AREA)

AT00914442T 1999-01-25 2000-01-25 Verfahren zur auswahl von oligonukleotiden mit niedriger kreuzhybridisierung ATE321308T1 (de)

Applications Claiming Priority (1)

Application Number	Priority Date	Filing Date	Title
US11695699P	1999-01-25	1999-01-25

Publications (1)

Publication Number	Publication Date
ATE321308T1 true ATE321308T1 (de)	2006-04-15

Family

ID=22370249

Family Applications (1)

Application Number	Title	Priority Date	Filing Date
AT00914442T ATE321308T1 (de)	1999-01-25	2000-01-25	Verfahren zur auswahl von oligonukleotiden mit niedriger kreuzhybridisierung

Country Status (7)

Country	Link
EP (1)	EP1145178B1 (de)
AT (1)	ATE321308T1 (de)
AU (1)	AU3583200A (de)
CA (1)	CA2361373A1 (de)
DE (1)	DE60026830T2 (de)
ES (1)	ES2260003T3 (de)
WO (1)	WO2000043942A2 (de)

Families Citing this family (6)

* Cited by examiner, † Cited by third party
Publication number	Priority date	Publication date	Assignee	Title
US7013221B1 (en)	1999-07-16	2006-03-14	Rosetta Inpharmatics Llc	Iterative probe design and detailed expression profiling with flexible in-situ synthesis arrays
US7371516B1 (en)	1999-07-16	2008-05-13	Rosetta Inpharmatics Llc	Methods for determining the specificity and sensitivity of oligonucleo tides for hybridization
WO2001042431A2 (en) *	1999-12-08	2001-06-14	Bayer Aktiengesellschaft	Regulation of human mitochondrial deformylase
US6713257B2 (en)	2000-08-25	2004-03-30	Rosetta Inpharmatics Llc	Gene discovery using microarrays
US7807447B1 (en)	2000-08-25	2010-10-05	Merck Sharp & Dohme Corp.	Compositions and methods for exon profiling
AU2004280531B2 (en) *	2003-05-23	2010-03-25	Cold Spring Harbor Laboratory	Counting exact word matches in genomes

Family Cites Families (3)

* Cited by examiner, † Cited by third party
Publication number	Priority date	Publication date	Assignee	Title
US5403707A (en) *	1993-05-14	1995-04-04	Eastman Kodak Company	Diagnostic compositions, elements, methods and test kits for amplification and detection of retroviral DNA using primers having matched melting temperatures
US5716784A (en) *	1996-02-05	1998-02-10	The Perkin-Elmer Corporation	Fluorescence detection assay for homogeneous PCR hybridization systems
US6458530B1 (en) *	1996-04-04	2002-10-01	Affymetrix Inc.	Selecting tag nucleic acids

2000
- 2000-01-25 AT AT00914442T patent/ATE321308T1/de not_active IP Right Cessation
- 2000-01-25 ES ES00914442T patent/ES2260003T3/es not_active Expired - Lifetime
- 2000-01-25 CA CA002361373A patent/CA2361373A1/en not_active Abandoned
- 2000-01-25 WO PCT/US2000/002000 patent/WO2000043942A2/en not_active Ceased
- 2000-01-25 AU AU35832/00A patent/AU3583200A/en not_active Abandoned
- 2000-01-25 EP EP00914442A patent/EP1145178B1/de not_active Expired - Lifetime
- 2000-01-25 DE DE60026830T patent/DE60026830T2/de not_active Expired - Lifetime

Also Published As

Publication number	Publication date
EP1145178B1 (de)	2006-03-22
DE60026830T2 (de)	2007-03-29
ES2260003T3 (es)	2006-11-01
DE60026830D1 (de)	2006-05-11
WO2000043942A3 (en)	2001-01-25
WO2000043942A2 (en)	2000-07-27
CA2361373A1 (en)	2000-07-27
AU3583200A (en)	2000-08-07
EP1145178A2 (de)	2001-10-17

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Legal Events

Date	Code	Title	Description
2006-09-15	RER	Ceased as to paragraph 5 lit. 3 law introducing patent treaties