ATE519864T1 - Dna-konformation (loop-strukturen) bei normaler und anomaler genexpression - Google Patents
Dna-konformation (loop-strukturen) bei normaler und anomaler genexpressionInfo
- Publication number
- ATE519864T1 ATE519864T1 AT07712741T AT07712741T ATE519864T1 AT E519864 T1 ATE519864 T1 AT E519864T1 AT 07712741 T AT07712741 T AT 07712741T AT 07712741 T AT07712741 T AT 07712741T AT E519864 T1 ATE519864 T1 AT E519864T1
- Authority
- AT
- Austria
- Prior art keywords
- gene expression
- normal
- abnormal gene
- loop structures
- dna conformation
- Prior art date
Links
- 230000002159 abnormal effect Effects 0.000 title abstract 3
- 230000014509 gene expression Effects 0.000 title abstract 3
- 210000001726 chromosome structure Anatomy 0.000 abstract 1
- 238000001514 detection method Methods 0.000 abstract 1
- 238000003745 diagnosis Methods 0.000 abstract 1
- 238000000034 method Methods 0.000 abstract 1
- 108090000623 proteins and genes Proteins 0.000 abstract 1
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6809—Methods for determination or identification of nucleic acids involving differential detection
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
- C12Q1/6886—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material for cancer
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/136—Screening for pharmacological compounds
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/16—Primer sets for multiplex assays
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Organic Chemistry (AREA)
- Health & Medical Sciences (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Engineering & Computer Science (AREA)
- Analytical Chemistry (AREA)
- Genetics & Genomics (AREA)
- Immunology (AREA)
- Molecular Biology (AREA)
- Biochemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Microbiology (AREA)
- General Health & Medical Sciences (AREA)
- General Engineering & Computer Science (AREA)
- Biotechnology (AREA)
- Biophysics (AREA)
- Physics & Mathematics (AREA)
- Pathology (AREA)
- Hospice & Palliative Care (AREA)
- Oncology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Investigating Or Analysing Biological Materials (AREA)
- Saccharide Compounds (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Micro-Organisms Or Cultivation Processes Thereof (AREA)
- Breeding Of Plants And Reproduction By Means Of Culturing (AREA)
- Medicines That Contain Protein Lipid Enzymes And Other Medicines (AREA)
- General Chemical & Material Sciences (AREA)
- Pharmaceuticals Containing Other Organic And Inorganic Compounds (AREA)
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| GBGB0603251.0A GB0603251D0 (en) | 2006-02-17 | 2006-02-17 | DNA conformation |
| PCT/GB2007/000564 WO2007093819A2 (en) | 2006-02-17 | 2007-02-19 | Dna conformation (loop structures) in normal and abnormal gene expression |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| ATE519864T1 true ATE519864T1 (de) | 2011-08-15 |
Family
ID=36142050
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| AT07712741T ATE519864T1 (de) | 2006-02-17 | 2007-02-19 | Dna-konformation (loop-strukturen) bei normaler und anomaler genexpression |
Country Status (15)
| Country | Link |
|---|---|
| US (2) | US9777327B2 (de) |
| EP (1) | EP1991697B1 (de) |
| JP (1) | JP5345857B2 (de) |
| CN (1) | CN101384734B (de) |
| AT (1) | ATE519864T1 (de) |
| AU (1) | AU2007216315B2 (de) |
| CA (1) | CA2642331C (de) |
| DK (1) | DK1991697T3 (de) |
| ES (1) | ES2368767T3 (de) |
| GB (1) | GB0603251D0 (de) |
| MY (1) | MY182608A (de) |
| NO (1) | NO343718B1 (de) |
| NZ (1) | NZ571201A (de) |
| WO (1) | WO2007093819A2 (de) |
| ZA (1) | ZA200807948B (de) |
Families Citing this family (58)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| GB0603251D0 (en) | 2006-02-17 | 2006-03-29 | Isis Innovation | DNA conformation |
| EP2245459A1 (de) | 2008-01-23 | 2010-11-03 | Herlev Hospital | Ykl-40 als genereller marker für nichtspezifische erkrankungen |
| GB0810051D0 (en) * | 2008-06-02 | 2008-07-09 | Oxford Biodynamics Ltd | Method of diagnosis |
| AU2009291312A1 (en) | 2008-09-15 | 2010-03-18 | Herlev Hospital | YKL-40 as a marker for gastrointestinal cancers |
| AU2011274642B2 (en) * | 2010-07-09 | 2015-05-21 | Cergentis B.V. | 3-d genomic region of interest sequencing strategies |
| US10323279B2 (en) | 2012-08-14 | 2019-06-18 | 10X Genomics, Inc. | Methods and systems for processing polynucleotides |
| US10584381B2 (en) | 2012-08-14 | 2020-03-10 | 10X Genomics, Inc. | Methods and systems for processing polynucleotides |
| US10273541B2 (en) | 2012-08-14 | 2019-04-30 | 10X Genomics, Inc. | Methods and systems for processing polynucleotides |
| US10221442B2 (en) | 2012-08-14 | 2019-03-05 | 10X Genomics, Inc. | Compositions and methods for sample processing |
| US11591637B2 (en) | 2012-08-14 | 2023-02-28 | 10X Genomics, Inc. | Compositions and methods for sample processing |
| US10752949B2 (en) | 2012-08-14 | 2020-08-25 | 10X Genomics, Inc. | Methods and systems for processing polynucleotides |
| CN114891871A (zh) | 2012-08-14 | 2022-08-12 | 10X基因组学有限公司 | 微胶囊组合物及方法 |
| US9701998B2 (en) | 2012-12-14 | 2017-07-11 | 10X Genomics, Inc. | Methods and systems for processing polynucleotides |
| US9951386B2 (en) | 2014-06-26 | 2018-04-24 | 10X Genomics, Inc. | Methods and systems for processing polynucleotides |
| EP3567116A1 (de) | 2012-12-14 | 2019-11-13 | 10X Genomics, Inc. | Verfahren und systeme zur verarbeitung von polynukleotiden |
| US10533221B2 (en) | 2012-12-14 | 2020-01-14 | 10X Genomics, Inc. | Methods and systems for processing polynucleotides |
| US9411930B2 (en) * | 2013-02-01 | 2016-08-09 | The Regents Of The University Of California | Methods for genome assembly and haplotype phasing |
| KR20230003659A (ko) | 2013-02-08 | 2023-01-06 | 10엑스 제노믹스, 인크. | 폴리뉴클레오티드 바코드 생성 |
| US10059989B2 (en) | 2013-05-23 | 2018-08-28 | The Board Of Trustees Of The Leland Stanford Junior University | Transposition of native chromatin for personal epigenomics |
| US9694361B2 (en) | 2014-04-10 | 2017-07-04 | 10X Genomics, Inc. | Fluidic devices, systems, and methods for encapsulating and partitioning reagents, and applications of same |
| KR20170026383A (ko) | 2014-06-26 | 2017-03-08 | 10엑스 제노믹스, 인크. | 핵산 서열의 분석 |
| EP4574974A3 (de) | 2014-06-26 | 2025-10-08 | 10x Genomics, Inc. | Verfahren zur analyse von nukleinsäuren aus einzelnen zellen oder zellpopulationen |
| US12312640B2 (en) | 2014-06-26 | 2025-05-27 | 10X Genomics, Inc. | Analysis of nucleic acid sequences |
| AU2015296029B2 (en) | 2014-08-01 | 2022-01-27 | Dovetail Genomics, Llc | Tagging nucleic acids for sequence assembly |
| JP2017532042A (ja) | 2014-10-29 | 2017-11-02 | １０エックス ゲノミクス，インコーポレイテッド | 標的化核酸配列決定のための方法及び組成物 |
| US9975122B2 (en) | 2014-11-05 | 2018-05-22 | 10X Genomics, Inc. | Instrument systems for integrated sample processing |
| AU2016207023B2 (en) | 2015-01-12 | 2019-12-05 | 10X Genomics, Inc. | Processes and systems for preparing nucleic acid sequencing libraries and libraries prepared using same |
| JP6777966B2 (ja) | 2015-02-17 | 2020-10-28 | ダブテイル ゲノミクス エルエルシー | 核酸配列アセンブリ |
| EP4286516A3 (de) | 2015-02-24 | 2024-03-06 | 10X Genomics, Inc. | Partitionsverarbeitungsverfahren und -systeme |
| AU2016222719B2 (en) | 2015-02-24 | 2022-03-31 | 10X Genomics, Inc. | Methods for targeted nucleic acid sequence coverage |
| WO2016154540A1 (en) | 2015-03-26 | 2016-09-29 | Dovetail Genomics Llc | Physical linkage preservation in dna storage |
| JP2018527016A (ja) * | 2015-06-24 | 2018-09-20 | オックスフォード バイオダイナミックス リミテッド | 染色体相互作用の検出 |
| SG11201803289VA (en) | 2015-10-19 | 2018-05-30 | Dovetail Genomics Llc | Methods for genome assembly, haplotype phasing, and target independent nucleic acid detection |
| KR102723865B1 (ko) | 2015-12-04 | 2024-10-29 | 10엑스 제노믹스, 인크. | 핵산 분석을 위한 방법 및 조성물 |
| US10975417B2 (en) | 2016-02-23 | 2021-04-13 | Dovetail Genomics, Llc | Generation of phased read-sets for genome assembly and haplotype phasing |
| GB201608000D0 (en) | 2016-05-06 | 2016-06-22 | Oxford Biodynamics Ltd | Chromosome detection |
| WO2017197343A2 (en) | 2016-05-12 | 2017-11-16 | 10X Genomics, Inc. | Microfluidic on-chip filters |
| WO2017197300A1 (en) | 2016-05-13 | 2017-11-16 | Dovetail Genomics Llc | Recovering long-range linkage information from preserved samples |
| WO2017197338A1 (en) | 2016-05-13 | 2017-11-16 | 10X Genomics, Inc. | Microfluidic systems and methods of use |
| ES2971286T3 (es) * | 2016-12-01 | 2024-06-04 | Oxford BioDynamics PLC | Aplicación de interacciones cromosómicas epigenéticas en diagnóstico de cáncer |
| US10011872B1 (en) | 2016-12-22 | 2018-07-03 | 10X Genomics, Inc. | Methods and systems for processing polynucleotides |
| US10815525B2 (en) | 2016-12-22 | 2020-10-27 | 10X Genomics, Inc. | Methods and systems for processing polynucleotides |
| US10550429B2 (en) | 2016-12-22 | 2020-02-04 | 10X Genomics, Inc. | Methods and systems for processing polynucleotides |
| CA3047888C (en) * | 2016-12-23 | 2025-05-27 | Oxford BioDynamics PLC | Method for typing epigenetic chromosome interactions |
| US12264411B2 (en) | 2017-01-30 | 2025-04-01 | 10X Genomics, Inc. | Methods and systems for analysis |
| EP4310183B1 (de) | 2017-01-30 | 2025-07-09 | 10X Genomics, Inc. | Verfahren und systeme zur tröpfchenbasierten einzelzellenbarcodierung |
| CN116064732A (zh) | 2017-05-26 | 2023-05-05 | 10X基因组学有限公司 | 转座酶可接近性染色质的单细胞分析 |
| US10844372B2 (en) | 2017-05-26 | 2020-11-24 | 10X Genomics, Inc. | Single cell analysis of transposase accessible chromatin |
| CN111511930B (zh) | 2017-11-03 | 2024-11-22 | 牛津生物动力有限责任公司 | 通过染色体相互作用遗传调节免疫响应 |
| EP3625361A1 (de) | 2017-11-15 | 2020-03-25 | 10X Genomics, Inc. | Funktionalisierte gelperlen |
| WO2019099908A1 (en) | 2017-11-17 | 2019-05-23 | 10X Genomics, Inc. | Methods and systems for associating physical and genetic properties of biological particles |
| WO2019152543A1 (en) | 2018-01-31 | 2019-08-08 | Dovetail Genomics, Llc | Sample prep for dna linkage recovery |
| WO2019152108A1 (en) | 2018-02-05 | 2019-08-08 | The Board Of Trustees Of The Leland Stanford Junior University | Systems and methods for multiplexed measurements in single and ensemble cells |
| EP3775271B1 (de) | 2018-04-06 | 2025-03-12 | 10X Genomics, Inc. | Systeme und verfahren zur qualitätskontrolle in einer einzelzellenverarbeitung |
| JP2022523564A (ja) | 2019-03-04 | 2022-04-25 | アイオーカレンツ， インコーポレイテッド | 機械学習を使用するデータ圧縮および通信 |
| AU2020381516A1 (en) * | 2019-11-15 | 2022-06-02 | Phase Genomics Inc. | Chromosome conformation capture from tissue samples |
| CN114550817B (zh) * | 2022-01-25 | 2022-12-23 | 云南大学 | 基于多特征的ctcf介导染色质环预测方法 |
| CN114841294B (zh) * | 2022-07-04 | 2022-10-28 | 杭州德适生物科技有限公司 | 一种检测染色体结构异常的分类器模型训练方法及装置 |
Family Cites Families (7)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| AU2002220521A1 (en) | 2000-11-29 | 2002-06-11 | Statens Seruminstitut | A screening assay for detecting chromosome rearrangements or recombinations |
| CN1231596C (zh) * | 2001-12-27 | 2005-12-14 | 赵兴波 | 利用线粒体dna指纹进行动物遗传信息鉴定的方法 |
| CN1515692A (zh) * | 2003-01-02 | 2004-07-28 | 缪金明 | “锚定点灯”式寡核苷酸芯片的检测技术 |
| EP1713938A2 (de) | 2004-02-09 | 2006-10-25 | Thomas Jefferson University | Diagnose und behandlung von krebserkrankungen mit oder nahe mit krebs in zusammenhang stehenden chromosomalen merkmalen lokalisierter microrna |
| US20060015264A1 (en) | 2004-06-02 | 2006-01-19 | Mcshea Andrew | Interfering stem-loop sequences and method for identifying |
| AU2006264564B2 (en) | 2005-07-04 | 2012-04-19 | Erasmus University Medical Center | Chromosome conformation capture-on-chip (4c) assay |
| GB0603251D0 (en) | 2006-02-17 | 2006-03-29 | Isis Innovation | DNA conformation |
-
2006
- 2006-02-17 GB GBGB0603251.0A patent/GB0603251D0/en not_active Ceased
-
2007
- 2007-02-19 CN CN2007800057991A patent/CN101384734B/zh active Active
- 2007-02-19 AU AU2007216315A patent/AU2007216315B2/en active Active
- 2007-02-19 AT AT07712741T patent/ATE519864T1/de not_active IP Right Cessation
- 2007-02-19 CA CA2642331A patent/CA2642331C/en active Active
- 2007-02-19 MY MYPI20083134A patent/MY182608A/en unknown
- 2007-02-19 US US12/279,133 patent/US9777327B2/en active Active
- 2007-02-19 ZA ZA200807948A patent/ZA200807948B/xx unknown
- 2007-02-19 NZ NZ571201A patent/NZ571201A/en unknown
- 2007-02-19 JP JP2008554852A patent/JP5345857B2/ja active Active
- 2007-02-19 ES ES07712741T patent/ES2368767T3/es active Active
- 2007-02-19 WO PCT/GB2007/000564 patent/WO2007093819A2/en not_active Ceased
- 2007-02-19 DK DK07712741.3T patent/DK1991697T3/da active
- 2007-02-19 EP EP07712741A patent/EP1991697B1/de active Active
-
2008
- 2008-09-17 NO NO20083957A patent/NO343718B1/no unknown
-
2017
- 2017-08-22 US US15/683,504 patent/US11384396B2/en active Active
Also Published As
| Publication number | Publication date |
|---|---|
| WO2007093819A2 (en) | 2007-08-23 |
| JP5345857B2 (ja) | 2013-11-20 |
| US11384396B2 (en) | 2022-07-12 |
| EP1991697A2 (de) | 2008-11-19 |
| NO20083957L (no) | 2008-11-14 |
| US20180080081A1 (en) | 2018-03-22 |
| MY182608A (en) | 2021-01-26 |
| CN101384734B (zh) | 2013-10-30 |
| US9777327B2 (en) | 2017-10-03 |
| CN101384734A (zh) | 2009-03-11 |
| HK1125416A1 (en) | 2009-08-07 |
| CA2642331A1 (en) | 2007-08-23 |
| JP2009526543A (ja) | 2009-07-23 |
| US20090186352A1 (en) | 2009-07-23 |
| ZA200807948B (en) | 2009-11-25 |
| WO2007093819A3 (en) | 2007-10-04 |
| GB0603251D0 (en) | 2006-03-29 |
| EP1991697B1 (de) | 2011-08-10 |
| NZ571201A (en) | 2011-07-29 |
| ES2368767T3 (es) | 2011-11-22 |
| AU2007216315A1 (en) | 2007-08-23 |
| AU2007216315B2 (en) | 2012-10-04 |
| CA2642331C (en) | 2018-06-19 |
| DK1991697T3 (da) | 2011-09-19 |
| NO343718B1 (no) | 2019-05-20 |
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Legal Events
| Date | Code | Title | Description |
|---|---|---|---|
| RER | Ceased as to paragraph 5 lit. 3 law introducing patent treaties |