ATE474064T1 - Probenaufbereitung zur genotypisierung mittels massenspektroskopie - Google Patents
Probenaufbereitung zur genotypisierung mittels massenspektroskopieInfo
- Publication number
- ATE474064T1 ATE474064T1 AT01954272T AT01954272T ATE474064T1 AT E474064 T1 ATE474064 T1 AT E474064T1 AT 01954272 T AT01954272 T AT 01954272T AT 01954272 T AT01954272 T AT 01954272T AT E474064 T1 ATE474064 T1 AT E474064T1
- Authority
- AT
- Austria
- Prior art keywords
- genotyping
- sample preparation
- mass spectroscopy
- mass spectrometry
- products
- Prior art date
Links
- 238000003205 genotyping method Methods 0.000 title abstract 3
- 238000004949 mass spectrometry Methods 0.000 title abstract 3
- 238000000034 method Methods 0.000 abstract 2
- 108700028369 Alleles Proteins 0.000 abstract 1
- 238000012217 deletion Methods 0.000 abstract 1
- 230000037430 deletion Effects 0.000 abstract 1
- 238000003780 insertion Methods 0.000 abstract 1
- 230000037431 insertion Effects 0.000 abstract 1
- 239000002773 nucleotide Substances 0.000 abstract 1
- 125000003729 nucleotide group Chemical group 0.000 abstract 1
- 102000054765 polymorphisms of proteins Human genes 0.000 abstract 1
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
- C12Q1/6858—Allele-specific amplification
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/156—Polymorphic or mutational markers
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Organic Chemistry (AREA)
- Engineering & Computer Science (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Health & Medical Sciences (AREA)
- Molecular Biology (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Immunology (AREA)
- Microbiology (AREA)
- Biophysics (AREA)
- Analytical Chemistry (AREA)
- Physics & Mathematics (AREA)
- Biotechnology (AREA)
- Biochemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Other Investigation Or Analysis Of Materials By Electrical Means (AREA)
- Investigating, Analyzing Materials By Fluorescence Or Luminescence (AREA)
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| EP00401886A EP1170379A1 (de) | 2000-06-30 | 2000-06-30 | Erstellung von Proben zur Genotypisierung mittels Massenspektroskopie |
| PCT/IB2001/001439 WO2002000931A2 (en) | 2000-06-30 | 2001-06-29 | Sample generation for genotyping by mass spectrometry |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| ATE474064T1 true ATE474064T1 (de) | 2010-07-15 |
Family
ID=8173746
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| AT01954272T ATE474064T1 (de) | 2000-06-30 | 2001-06-29 | Probenaufbereitung zur genotypisierung mittels massenspektroskopie |
Country Status (9)
| Country | Link |
|---|---|
| US (1) | US20040038234A1 (de) |
| EP (2) | EP1170379A1 (de) |
| AT (1) | ATE474064T1 (de) |
| AU (1) | AU2001276613A1 (de) |
| CA (1) | CA2414585A1 (de) |
| DE (1) | DE60142566D1 (de) |
| DK (1) | DK1297181T3 (de) |
| ES (1) | ES2347416T3 (de) |
| WO (1) | WO2002000931A2 (de) |
Families Citing this family (47)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US7534568B2 (en) * | 1999-10-29 | 2009-05-19 | Hologic Inc. | Methods for detection of a target nucleic acid by forming a cleavage structure with a cleavage resistant probe |
| EP1364046B1 (de) * | 2000-05-23 | 2011-11-30 | Variagenics, Inc. | Methode zur genetischen analyse von dna und zur detektion von sequenzvarianten |
| DE10108453B4 (de) * | 2001-02-22 | 2005-10-20 | Bruker Daltonik Gmbh | Massenspektrometrische Mutationsanalyse mit photolytisch spaltbaren Primern |
| US7226739B2 (en) | 2001-03-02 | 2007-06-05 | Isis Pharmaceuticals, Inc | Methods for rapid detection and identification of bioagents in epidemiological and forensic investigations |
| US7666588B2 (en) * | 2001-03-02 | 2010-02-23 | Ibis Biosciences, Inc. | Methods for rapid forensic analysis of mitochondrial DNA and characterization of mitochondrial DNA heteroplasmy |
| US20040121309A1 (en) * | 2002-12-06 | 2004-06-24 | Ecker David J. | Methods for rapid detection and identification of bioagents in blood, bodily fluids, and bodily tissues |
| US7718354B2 (en) | 2001-03-02 | 2010-05-18 | Ibis Biosciences, Inc. | Methods for rapid identification of pathogens in humans and animals |
| US20030027135A1 (en) * | 2001-03-02 | 2003-02-06 | Ecker David J. | Method for rapid detection and identification of bioagents |
| WO2004060278A2 (en) | 2002-12-06 | 2004-07-22 | Isis Pharmaceuticals, Inc. | Methods for rapid identification of pathogens in humans and animals |
| US8073627B2 (en) | 2001-06-26 | 2011-12-06 | Ibis Biosciences, Inc. | System for indentification of pathogens |
| US7217510B2 (en) * | 2001-06-26 | 2007-05-15 | Isis Pharmaceuticals, Inc. | Methods for providing bacterial bioagent characterizing information |
| US8046171B2 (en) * | 2003-04-18 | 2011-10-25 | Ibis Biosciences, Inc. | Methods and apparatus for genetic evaluation |
| US8057993B2 (en) | 2003-04-26 | 2011-11-15 | Ibis Biosciences, Inc. | Methods for identification of coronaviruses |
| US7964343B2 (en) * | 2003-05-13 | 2011-06-21 | Ibis Biosciences, Inc. | Method for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture |
| US8158354B2 (en) | 2003-05-13 | 2012-04-17 | Ibis Biosciences, Inc. | Methods for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture |
| US20100035239A1 (en) * | 2003-09-11 | 2010-02-11 | Isis Pharmaceuticals, Inc. | Compositions for use in identification of bacteria |
| US20080138808A1 (en) * | 2003-09-11 | 2008-06-12 | Hall Thomas A | Methods for identification of sepsis-causing bacteria |
| US8097416B2 (en) | 2003-09-11 | 2012-01-17 | Ibis Biosciences, Inc. | Methods for identification of sepsis-causing bacteria |
| US20060240412A1 (en) * | 2003-09-11 | 2006-10-26 | Hall Thomas A | Compositions for use in identification of adenoviruses |
| US8546082B2 (en) | 2003-09-11 | 2013-10-01 | Ibis Biosciences, Inc. | Methods for identification of sepsis-causing bacteria |
| US20120122102A1 (en) | 2003-09-11 | 2012-05-17 | Rangarajan Sampath | Compositions for use in identification of bacteria |
| US8163895B2 (en) | 2003-12-05 | 2012-04-24 | Ibis Biosciences, Inc. | Compositions for use in identification of orthopoxviruses |
| US7666592B2 (en) | 2004-02-18 | 2010-02-23 | Ibis Biosciences, Inc. | Methods for concurrent identification and quantification of an unknown bioagent |
| US8119336B2 (en) * | 2004-03-03 | 2012-02-21 | Ibis Biosciences, Inc. | Compositions for use in identification of alphaviruses |
| WO2005113804A1 (en) * | 2004-05-20 | 2005-12-01 | Trillion Genomics Limited | Use of mass labelled probes to detect target nucleic acids using mass spectrometry |
| JP4810533B2 (ja) | 2004-05-24 | 2011-11-09 | アイビス バイオサイエンシズ インコーポレイティッド | ディジタルスレショルド化による選択的イオン濾過作用を用いた質量分光測定法 |
| US20050266411A1 (en) * | 2004-05-25 | 2005-12-01 | Hofstadler Steven A | Methods for rapid forensic analysis of mitochondrial DNA |
| US7811753B2 (en) | 2004-07-14 | 2010-10-12 | Ibis Biosciences, Inc. | Methods for repairing degraded DNA |
| US8084207B2 (en) * | 2005-03-03 | 2011-12-27 | Ibis Bioscience, Inc. | Compositions for use in identification of papillomavirus |
| US20060205040A1 (en) * | 2005-03-03 | 2006-09-14 | Rangarajan Sampath | Compositions for use in identification of adventitious viruses |
| US8026084B2 (en) * | 2005-07-21 | 2011-09-27 | Ibis Biosciences, Inc. | Methods for rapid identification and quantitation of nucleic acid variants |
| DE102006003415A1 (de) * | 2006-01-24 | 2007-08-02 | Siemens Ag | Verfahren zur Analyse einer Probe |
| WO2008143627A2 (en) * | 2006-09-14 | 2008-11-27 | Ibis Biosciences, Inc. | Targeted whole genome amplification method for identification of pathogens |
| JP5680304B2 (ja) * | 2007-02-23 | 2015-03-04 | アイビス バイオサイエンシズ インコーポレイティッド | 迅速な法医学的dna分析法 |
| WO2008118809A1 (en) * | 2007-03-23 | 2008-10-02 | Ibis Biosciences, Inc. | Compositions for use in identification of mixed populations of bioagents |
| US9598724B2 (en) | 2007-06-01 | 2017-03-21 | Ibis Biosciences, Inc. | Methods and compositions for multiple displacement amplification of nucleic acids |
| JP2009047956A (ja) * | 2007-08-21 | 2009-03-05 | Sony Corp | 撮像装置 |
| EP2344893B1 (de) | 2008-09-16 | 2014-10-15 | Ibis Biosciences, Inc. | Mikroplatten-handhabungssysteme und verfahren |
| EP2347254A2 (de) | 2008-09-16 | 2011-07-27 | Ibis Biosciences, Inc. | Probenverarbeitungseinheiten, -systeme und damit verbundene verfahren |
| EP2349549B1 (de) | 2008-09-16 | 2012-07-18 | Ibis Biosciences, Inc. | Mischpatronen, mischstationen und verwandte ausrüstungen, und system |
| EP2396803A4 (de) | 2009-02-12 | 2016-10-26 | Ibis Biosciences Inc | Ionisationssondenanordnungen |
| EP2233580A1 (de) | 2009-03-05 | 2010-09-29 | The Ohio State University | Schnelle SNP-Genotypisierung |
| US8950604B2 (en) * | 2009-07-17 | 2015-02-10 | Ibis Biosciences, Inc. | Lift and mount apparatus |
| WO2011008972A1 (en) | 2009-07-17 | 2011-01-20 | Ibis Biosciences, Inc. | Systems for bioagent identification |
| US20110091882A1 (en) * | 2009-10-02 | 2011-04-21 | Ibis Biosciences, Inc. | Determination of methylation status of polynucleotides |
| US9890408B2 (en) * | 2009-10-15 | 2018-02-13 | Ibis Biosciences, Inc. | Multiple displacement amplification |
| NL2022038B1 (en) * | 2018-11-21 | 2020-06-05 | Biosparq B V | Method for analysing an analyte sample and matrix material therefore |
Family Cites Families (11)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US5130538A (en) * | 1989-05-19 | 1992-07-14 | John B. Fenn | Method of producing multiply charged ions and for determining molecular weights of molecules by use of the multiply charged ions of molecules |
| GB2236184B (en) * | 1989-09-12 | 1993-07-28 | Finnigan Mat Ltd | Method of preparing samples for laser spectrometry analysis |
| US5605798A (en) * | 1993-01-07 | 1997-02-25 | Sequenom, Inc. | DNA diagnostic based on mass spectrometry |
| JPH10509594A (ja) * | 1994-11-28 | 1998-09-22 | イー・アイ・デユポン・ドウ・ヌムール・アンド・カンパニー | 遺伝的多型の検出のための複合ミクロサテライトプライマー |
| GB9504598D0 (en) * | 1995-03-03 | 1995-04-26 | Imp Cancer Res Tech | Method of nucleic acid analysis |
| US6004770A (en) * | 1995-06-07 | 1999-12-21 | Arizona State University Board Of Regents | Sample presentation apparatus for mass spectrometry |
| PT840804E (pt) * | 1996-01-23 | 2000-10-31 | Qiagen Genomics Inc | Metodos e composicoes para a analise de moleculas de acidos nocleicos usando tecnicas de separacao por dimensoes |
| US5885775A (en) * | 1996-10-04 | 1999-03-23 | Perseptive Biosystems, Inc. | Methods for determining sequences information in polynucleotides using mass spectrometry |
| DE19824280B4 (de) * | 1998-05-29 | 2004-08-19 | Bruker Daltonik Gmbh | Mutationsanalyse mittels Massenspektrometrie |
| US6703228B1 (en) * | 1998-09-25 | 2004-03-09 | Massachusetts Institute Of Technology | Methods and products related to genotyping and DNA analysis |
| US6440705B1 (en) * | 1998-10-01 | 2002-08-27 | Vincent P. Stanton, Jr. | Method for analyzing polynucleotides |
-
2000
- 2000-06-30 EP EP00401886A patent/EP1170379A1/de not_active Withdrawn
-
2001
- 2001-06-29 EP EP01954272A patent/EP1297181B1/de not_active Expired - Lifetime
- 2001-06-29 DE DE60142566T patent/DE60142566D1/de not_active Expired - Lifetime
- 2001-06-29 ES ES01954272T patent/ES2347416T3/es not_active Expired - Lifetime
- 2001-06-29 CA CA002414585A patent/CA2414585A1/en not_active Abandoned
- 2001-06-29 AT AT01954272T patent/ATE474064T1/de not_active IP Right Cessation
- 2001-06-29 DK DK01954272.9T patent/DK1297181T3/da active
- 2001-06-29 WO PCT/IB2001/001439 patent/WO2002000931A2/en not_active Ceased
- 2001-06-29 AU AU2001276613A patent/AU2001276613A1/en not_active Abandoned
- 2001-06-29 US US10/311,331 patent/US20040038234A1/en not_active Abandoned
Also Published As
| Publication number | Publication date |
|---|---|
| EP1297181B1 (de) | 2010-07-14 |
| ES2347416T3 (es) | 2010-10-29 |
| WO2002000931A2 (en) | 2002-01-03 |
| AU2001276613A1 (en) | 2002-01-08 |
| EP1170379A1 (de) | 2002-01-09 |
| EP1297181A2 (de) | 2003-04-02 |
| US20040038234A1 (en) | 2004-02-26 |
| DK1297181T3 (da) | 2010-09-20 |
| CA2414585A1 (en) | 2002-01-03 |
| WO2002000931A3 (en) | 2002-05-23 |
| DE60142566D1 (de) | 2010-08-26 |
Similar Documents
| Publication | Publication Date | Title |
|---|---|---|
| DE60142566D1 (de) | Probenaufbereitung zur genotypisierung mittels massenspektroskopie | |
| EP2088210A3 (de) | Verbesserte Bisulfit-Umwandlung von DNA | |
| DE60219132D1 (de) | Mutationsanalyse Mittels PCR und Massenspektrometrie | |
| DE69929542D1 (de) | Komplexitätsmanagement und analyse genomischer dna | |
| AU6163399A (en) | Methods and products related to genotyping and dna analysis | |
| WO2003027326A3 (en) | Nucleic acid sequencing by raman monitoring of molecular deconstruction | |
| DE60116651D1 (de) | Methode zur amplifizierung und möglicher charakterisierung von nukleinsäuren | |
| Fei et al. | Analysis of single nucleotide polymorphisms by primer extension and matrix‐assisted laser desorption/ionization time‐of‐flight mass spectrometry | |
| WO2002072880A3 (de) | Verfahren zum nachweis von cytosin-methylierungsmustern mit hoher sensitivität | |
| EP1234888A3 (de) | Mutationsanalyse nach Massenspektrometrie mit photolytically spaltbaren Primer | |
| WO2003031649A3 (de) | Verfahren zum nachweis von cytosin-methylierung in cpg-inseln | |
| US20160298183A1 (en) | High-throughput sequencing detection method for methylated cpg islands | |
| WO2003057909A3 (de) | Verfahren zum nachweis von cytosin-methylierungsmustern durch exponentielle ligation hybridisierter sondenoligonukleotide (mla) | |
| EP1362929A3 (de) | Methoden zur Genotypisierung | |
| DE69940623D1 (de) | Prozess zur Synthetisierung von Nukleinsäure | |
| WO2003036434A3 (en) | A system and method for consensus-calling with per-base quality values for sample assemblies | |
| WO2003002760A3 (de) | Verfahren zum nachweis von cytosin-methylierung durch vergleichende analyse der einzelstränge von amplifikaten | |
| DE60122899D1 (de) | Verfahren zur detektion von haplotypen mittels massenspektrometrie | |
| Azhikina et al. | Study of tissue-specific CpG methylation of DNA in extended genomic loci | |
| WO2004067764A2 (en) | Nucleic acid sequencing using nicking agents | |
| Bus et al. | Multiplex pyrosequencing of InDel markers for forensic DNA analysis | |
| DE602004028281D1 (de) | Verfahren zur hla-typisierung | |
| WO2003002752A3 (en) | Methods of using nick translate libraries for snp analysis | |
| AU7703896A (en) | Methods for separating and/or identifying dna molecules | |
| WO2005003390A3 (en) | Method for detection of mutations in dna |
Legal Events
| Date | Code | Title | Description |
|---|---|---|---|
| RER | Ceased as to paragraph 5 lit. 3 law introducing patent treaties |