ES2176358T3 - Deteccion mediada por glucosilasa de secuencias nucleotidicas conocidas. - Google Patents

Deteccion mediada por glucosilasa de secuencias nucleotidicas conocidas.

Info

Publication number
ES2176358T3
ES2176358T3 ES95942776T ES95942776T ES2176358T3 ES 2176358 T3 ES2176358 T3 ES 2176358T3 ES 95942776 T ES95942776 T ES 95942776T ES 95942776 T ES95942776 T ES 95942776T ES 2176358 T3 ES2176358 T3 ES 2176358T3
Authority
ES
Spain
Prior art keywords
nucleic acid
sample
dna
glucosylase
absence
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Expired - Lifetime
Application number
ES95942776T
Other languages
English (en)
Inventor
Thomas Valentine Mccarthy
Patrick Martin Vaughan
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
University College Cork
Bioresearch Ireland
Original Assignee
University College Cork
Bioresearch Ireland
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Family has litigation
First worldwide family litigation filed litigation Critical https://patents.darts-ip.com/?family=11040818&utm_source=google_patent&utm_medium=platform_link&utm_campaign=public_patent_search&patent=ES2176358(T3) "Global patent litigation dataset” by Darts-ip is licensed under a Creative Commons Attribution 4.0 International License.
Application filed by University College Cork, Bioresearch Ireland filed Critical University College Cork
Application granted granted Critical
Publication of ES2176358T3 publication Critical patent/ES2176358T3/es
Anticipated expiration legal-status Critical
Expired - Lifetime legal-status Critical Current

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6827—Hybridisation assays for detection of mutation or polymorphism
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • C12Q1/6853—Nucleic acid amplification reactions using modified primers or templates
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/156—Polymorphic or mutational markers

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Zoology (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Wood Science & Technology (AREA)
  • Analytical Chemistry (AREA)
  • Microbiology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Molecular Biology (AREA)
  • Immunology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Biochemistry (AREA)
  • Physics & Mathematics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Saccharide Compounds (AREA)

Abstract

UN METODO PARA DETECCION RAPIDA DE LA PRESENCIA O AUSENCIA DE UNA SECUENCIA PARTICULAR DE ACIDO NUCLEICO EN UN LOCUS CANDIDATO EN UNA MUESTRA DE ACIDO NUCLEICO DIANA QUE COMPRENDE LAS SIGUIENTES FASES: I) INTRODUCCION DE UNA BASE MODIFICADA QUE ES UN SUSTRATO PARA UNA GLUCOSILASA DE ADN EN DICHO LOCUS CANDIDATO EN UNA O MAS POSICIONES PRESELECCIONADAS; II) EXTRACCION DE LA BASE MODIFICADA POR MEDIO DE LA MENCIONADA GLUCOSILASA DE ADN PARA GENERAR UNA ZONA ABASICA; III) ESCISION DE LOS ENLACES FOSFATO EN LAS ZONAS ABASICAS GENERADAS EN LA FASE II); Y IV) ANALISIS DE LOS PRODUCTOS DE ESCISION DE LA FASE III) A FIN DE IDENTIFICAR EN DICHA SECUENCIA DE ACIDO NUCLEICO DIANA LA PRESENCIA O AUSENCIA DE LA MENCIONADA SECUENCIA PARTICULAR DE ACIDO NUCLEICO EN EL LOCUS CANDIDATO. EL METODO TIENE UNA APLICACION PARTICULAR PARA DETECTAR MUTACIONES ESPECIFICAS EN UNA MUESTRA DE ADN, INCLUYENDO LA DETECCION DE MULTIPLES MUTACIONES CONOCIDAS EN EL ADN. PUEDE LOGRARSE RAPIDA Y FACILMENTE UNA GRAN CANTIDADDE MUESTRA.
ES95942776T 1995-07-11 1995-12-21 Deteccion mediada por glucosilasa de secuencias nucleotidicas conocidas. Expired - Lifetime ES2176358T3 (es)

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
IE950526 1995-07-11

Publications (1)

Publication Number Publication Date
ES2176358T3 true ES2176358T3 (es) 2002-12-01

Family

ID=11040818

Family Applications (1)

Application Number Title Priority Date Filing Date
ES95942776T Expired - Lifetime ES2176358T3 (es) 1995-07-11 1995-12-21 Deteccion mediada por glucosilasa de secuencias nucleotidicas conocidas.

Country Status (13)

Country Link
US (1) US5952176A (es)
EP (1) EP0843735B2 (es)
JP (1) JP3790797B2 (es)
AT (1) ATE220725T1 (es)
AU (1) AU708821B2 (es)
CA (1) CA2226542C (es)
DE (1) DE69527444T3 (es)
DK (1) DK0843735T4 (es)
ES (1) ES2176358T3 (es)
NO (1) NO980105L (es)
NZ (1) NZ298494A (es)
PT (1) PT843735E (es)
WO (1) WO1997003210A1 (es)

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US6117634A (en) * 1997-03-05 2000-09-12 The Reagents Of The University Of Michigan Nucleic acid sequencing and mapping
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US5885958A (en) * 1997-03-25 1999-03-23 Administrators Of The Tulane Educational Fund Mu-opiate receptor peptides
WO1998054571A1 (en) * 1997-05-28 1998-12-03 The Walter And Eliza Hall Institute Of Medical Research Nucleic acid diagnostics based on mass spectrometry or mass separation and base specific cleavage
US6090553A (en) * 1997-10-29 2000-07-18 Beckman Coulter, Inc. Use of uracil-DNA glycosylase in genetic analysis
WO1999042622A1 (en) * 1998-02-23 1999-08-26 Dana-Farber Cancer Institute, Inc. Method for identifying mismatch repair glycosylase reactive sites, compound and uses thereof_____________________________________
AU753661B2 (en) * 1998-04-22 2002-10-24 Enterprise Ireland Trading As Bioresearch Ireland A method for the characterisation of nucleic acid molecules involving generation of extendible upstream DNA fragments resulting from the cleavage of nucleic acid at an abasic site
US6048696A (en) * 1998-05-13 2000-04-11 Epicentre Technologies Corporation Method of identifying nucleic acid molecules
US7270958B2 (en) 1998-09-10 2007-09-18 The Regents Of The University Of Michigan Compositions and methods for analysis of nucleic acids
US6440705B1 (en) * 1998-10-01 2002-08-27 Vincent P. Stanton, Jr. Method for analyzing polynucleotides
EP1041159A3 (de) * 1999-03-26 2000-10-25 MIRA Diagnostika GmbH Verfahren, Oligonucleotide zum Abbau von in-vitro synthetisierten Nucleinsäuremolekülen
US20060275782A1 (en) 1999-04-20 2006-12-07 Illumina, Inc. Detection of nucleic acid reactions on bead arrays
US20030207295A1 (en) * 1999-04-20 2003-11-06 Kevin Gunderson Detection of nucleic acid reactions on bead arrays
US7332275B2 (en) 1999-10-13 2008-02-19 Sequenom, Inc. Methods for detecting methylated nucleotides
US20030207297A1 (en) * 1999-10-13 2003-11-06 Hubert Koster Methods for generating databases and databases for identifying polymorphic genetic markers
JP2003519829A (ja) 1999-10-13 2003-06-24 シークエノム・インコーポレーテツド データベースを作成する方法および多型遺伝的マーカーを同定するためのデータベース
US6958214B2 (en) 2000-07-10 2005-10-25 Sequenom, Inc. Polymorphic kinase anchor proteins and nucleic acids encoding the same
DE60131903T2 (de) * 2000-10-24 2008-11-27 The Board of Trustees of the Leland S. Stanford Junior University, Palo Alto Direkte multiplex charakterisierung von genomischer dna
WO2002103013A2 (en) * 2000-10-30 2002-12-27 Gene Logic, Inc. Partially double-stranded nucleic acids, methods of making, and use thereof
IE20000887A1 (en) * 2000-11-03 2002-12-11 Univ College Cork Nat Univ Ie Method for the amplification and optional characterisation of nucleic acids
WO2002081753A1 (en) * 2001-04-04 2002-10-17 Advanced Research & Technology Institute Method for identifying and characterizing individual dna molecules
US20110151438A9 (en) 2001-11-19 2011-06-23 Affymetrix, Inc. Methods of Analysis of Methylation
US7208295B2 (en) * 2001-11-19 2007-04-24 Affymetrix, Inc. Multiplex oligonucleotide addition and target amplification
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IE20020544A1 (en) * 2002-06-28 2003-12-31 Univ College Cork Nat Univ Ie Method for the characterisation of nucleic acid molecules
EP1613723B1 (en) * 2002-11-27 2013-05-15 Sequenom, Inc. Fragmentation-based methods for sequence variation detection and discovery
EP1601332A4 (en) 2003-03-07 2012-05-02 Verenium Corp HYDROLASES, NUCLEIC ACIDS ENCODING THEM, AND METHODS OF MAKING AND USING SAME
US20050239087A1 (en) * 2003-04-29 2005-10-27 Haiguang Xiao Multiply-primed amplification of nucleic acid sequences
US7670810B2 (en) 2003-06-20 2010-03-02 Illumina, Inc. Methods and compositions for whole genome amplification and genotyping
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Also Published As

Publication number Publication date
JP3790797B2 (ja) 2006-06-28
PT843735E (pt) 2002-11-29
DE69527444T2 (de) 2003-02-20
DE69527444D1 (de) 2002-08-22
DK0843735T3 (da) 2002-11-11
DK0843735T4 (da) 2007-01-22
DE69527444T3 (de) 2007-08-16
EP0843735A1 (en) 1998-05-27
JP2000509241A (ja) 2000-07-25
AU708821B2 (en) 1999-08-12
CA2226542A1 (en) 1997-01-30
NO980105L (no) 1998-03-10
EP0843735B2 (en) 2006-12-27
CA2226542C (en) 2006-04-04
AU4399596A (en) 1997-02-10
ATE220725T1 (de) 2002-08-15
US5952176A (en) 1999-09-14
EP0843735B1 (en) 2002-07-17
NZ298494A (en) 1999-09-29
NO980105D0 (no) 1998-01-09
WO1997003210A1 (en) 1997-01-30

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