ES2570828T3 - Método de análisis de metilación - Google Patents

Método de análisis de metilación

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Publication number
ES2570828T3
ES2570828T3 ES12164321T ES12164321T ES2570828T3 ES 2570828 T3 ES2570828 T3 ES 2570828T3 ES 12164321 T ES12164321 T ES 12164321T ES 12164321 T ES12164321 T ES 12164321T ES 2570828 T3 ES2570828 T3 ES 2570828T3
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ES
Spain
Prior art keywords
terminal
oligonucleotide
nucleotides
seq
variant
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Active
Application number
ES12164321T
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English (en)
Inventor
Theo Devos
Cathy Lofton-Day
Andrew Sledziewski
Fabian Model
Michael Krouse
Mathias Schuster
Jürgen Distler
Reimo Tetzner
Jesse Ho
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Epigenomics AG
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Epigenomics AG
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Publication date
Application filed by Epigenomics AG filed Critical Epigenomics AG
Application granted granted Critical
Publication of ES2570828T3 publication Critical patent/ES2570828T3/es
Active legal-status Critical Current
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Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6806—Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6827—Hybridisation assays for detection of mutation or polymorphism
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10—TECHNICAL SUBJECTS COVERED BY FORMER USPC
    • Y10T—TECHNICAL SUBJECTS COVERED BY FORMER US CLASSIFICATION
    • Y10T436/00—Chemistry: analytical and immunological testing
    • Y10T436/14—Heterocyclic carbon compound [i.e., O, S, N, Se, Te, as only ring hetero atom]
    • Y10T436/142222—Hetero-O [e.g., ascorbic acid, etc.]
    • Y10T436/143333—Saccharide [e.g., DNA, etc.]

Landscapes

  • Chemical & Material Sciences (AREA)
  • Organic Chemistry (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Analytical Chemistry (AREA)
  • Biophysics (AREA)
  • Biochemistry (AREA)
  • Microbiology (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Physics & Mathematics (AREA)
  • Genetics & Genomics (AREA)
  • Immunology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Investigating Or Analysing Materials By The Use Of Chemical Reactions (AREA)

Abstract

Un método para análisis de metilación, comprende a) tratar ADN genómico con uno o más reactivos para convertir bases de citosina no metiladas a sulfonato de uracilo o a otra base que tenga un comportamiento de unión diferente de citosina, mientras que la citosina metilada permanece sin cambio; b) amplificar el ADN tratado por medio de i) un oligonucleótido que comprende o que consiste de una secuencia definida por la SEQ ID NO: 5 o una variante de la misma con supresión de 5'-terminal y/o 3'-terminal de 1, 2, 3, 4 o 5 nucleótidos; y ii) un oligonucleótido que comprende o que consiste de una secuencia que se define por la SEQ ID NO: 44 o una variante de la misma con supresión de 5'-terminal y/o 3'-terminal de 1, 2, 3, 4 o 5 nucleótidos; en donde dichos oligonucleótidos son adecuados para uso como cebadores; c) deducir la presencia o ausencia de metilación de los dinucleótidos CpG amplificados en la etapa b) a partir de los resultados de la etapa b).
ES12164321T 2007-06-08 2008-06-06 Método de análisis de metilación Active ES2570828T3 (es)

Applications Claiming Priority (7)

Application Number Priority Date Filing Date Title
EP07109907 2007-06-08
EP07110409 2007-06-15
EP07113516 2007-07-31
EP07114659 2007-08-21
EP07114863 2007-08-23
EP08150552 2008-01-23
EP08151442 2008-02-14

Publications (1)

Publication Number Publication Date
ES2570828T3 true ES2570828T3 (es) 2016-05-20

Family

ID=40094240

Family Applications (2)

Application Number Title Priority Date Filing Date
ES16163841T Active ES2769841T3 (es) 2007-06-08 2008-06-06 Método de análisis de metilación
ES12164321T Active ES2570828T3 (es) 2007-06-08 2008-06-06 Método de análisis de metilación

Family Applications Before (1)

Application Number Title Priority Date Filing Date
ES16163841T Active ES2769841T3 (es) 2007-06-08 2008-06-06 Método de análisis de metilación

Country Status (11)

Country Link
US (1) US8623599B2 (es)
EP (3) EP2479289B1 (es)
CY (1) CY1118259T1 (es)
DK (2) DK3101141T3 (es)
ES (2) ES2769841T3 (es)
HR (2) HRP20160425T1 (es)
HU (1) HUE028727T2 (es)
LT (1) LT3101141T (es)
PL (1) PL2479289T3 (es)
SI (2) SI2479289T1 (es)
WO (1) WO2008149237A2 (es)

Families Citing this family (35)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7601497B2 (en) 2000-06-15 2009-10-13 Qiagen Gaithersburg, Inc. Detection of nucleic acids by target-specific hybrid capture method
TWI419974B (zh) 2008-10-27 2013-12-21 Qiagen Gaithersburg Inc 於自動平台上之快速結果雜交捕捉法
WO2010127228A1 (en) 2009-05-01 2010-11-04 Qiagen Gaithersburg, Inc. A non-target amplification method for detection of rna splice-forms in a sample
JP5826752B2 (ja) 2009-09-14 2015-12-02 キアジェン ゲイサーズバーグ インコーポレイテッド 細胞学用培地に固定された組織サンプルから核酸またはタンパク質を回収するための組成物および方法
US8889353B2 (en) 2009-09-23 2014-11-18 Koninklijke Philips N.V. Method for monitoring the bisulfite-mediated conversion of DNA
JP2013517803A (ja) 2010-01-29 2013-05-20 キアジェン ゲイサーズバーグ インコーポレイテッド サンプル中のｈｐｖの存在を決定および確認する方法
CA2787924A1 (en) 2010-01-29 2011-08-04 Qiagen Gaithersburg, Inc. Methods and compositions for sequence-specific purification and multiplex analysis of nucleic acids
EP2572001A2 (en) 2010-05-19 2013-03-27 QIAGEN Gaithersburg, Inc. Methods and compositions for sequence-specific purification and multiplex analysis of nucleic acids
JP6153866B2 (ja) 2010-05-25 2017-06-28 キアゲン ガイサーズバーグ アイエヌシー． 迅速なハイブリッド捕捉アッセイ、及び関連する戦略的に切断されたプローブ
US9725754B2 (en) * 2010-07-29 2017-08-08 Sean F. Boyle Generic sample preparation
US8361720B2 (en) 2010-11-15 2013-01-29 Exact Sciences Corporation Real time cleavage assay
US8916344B2 (en) 2010-11-15 2014-12-23 Exact Sciences Corporation Methylation assay
WO2012116220A2 (en) 2011-02-24 2012-08-30 Qiagen Gaithersburg, Inc. Materials and methods for detection of hpv nucleic acid
US9315853B2 (en) * 2012-01-30 2016-04-19 Exact Sciences Corporation Modification of DNA on magnetic beads
JP6224689B2 (ja) * 2012-03-15 2017-11-01 ニユー・イングランド・バイオレイブス・インコーポレイテツド シトシンとこれの修飾物とを識別するための、およびメチローム分析のための方法および組成物
EP2746403A1 (de) 2012-12-21 2014-06-25 Life Science Inkubator GmbH & Co. KG Verfahren zur Bestimmung des DNA-Methylierungsgrades
CA2902916C (en) 2013-03-14 2018-08-28 Mayo Foundation For Medical Education And Research Detecting neoplasm
CN105026580A (zh) * 2013-03-15 2015-11-04 雅培分子公司 重亚硫酸盐转化的核苷酸序列的检测
WO2015159292A2 (en) 2014-04-14 2015-10-22 Yissum Research Development Company Of The Hebrew University Of Jerusalem Ltd. A method and kit for determining the tissue or cell origin of dna
US10184154B2 (en) 2014-09-26 2019-01-22 Mayo Foundation For Medical Education And Research Detecting cholangiocarcinoma
HUE044055T2 (hu) * 2014-12-19 2019-09-30 Epigenomics Ag A CPG metiláció kimutatására és a rák diagnosztizálására szolgáló eljárások
US10435755B2 (en) 2015-03-27 2019-10-08 Exact Sciences Development Company, Llc Detecting esophageal disorders
CN114574585A (zh) 2015-08-31 2022-06-03 梅约医药教育及研究基金会 检测胃肿瘤
CN108350485A (zh) 2015-10-30 2018-07-31 精密科学发展有限责任公司 血浆dna的多重扩增检测测定以及分离和检测
US11021743B2 (en) * 2015-11-27 2021-06-01 Agency For Science, Technology And Research Determination of nucleic acid methylation
CN105506133A (zh) * 2016-01-15 2016-04-20 武汉艾米森生命科技有限公司 用于检测sept9基因甲基化的组合物、试剂盒及方法
CN109563546B (zh) 2016-05-05 2022-09-09 精密科学发展有限责任公司 通过分析甲基化dna来检测肺肿瘤
KR102892245B1 (ko) 2017-01-27 2025-11-27 이그젝트 싸이언스 디블롭먼트 컴패니, 엘엘씨 메틸화된 dna 분석에 의한 결장 신조직형성의 검출
CN107164524A (zh) * 2017-06-27 2017-09-15 深圳市优圣康生物科技有限公司 用于基因甲基化检测的引物和探针、采样方法、试剂盒
WO2019012544A1 (en) 2017-07-13 2019-01-17 Yissum Research Development Company Of The Hebrew University Of Jerusalem Ltd. STRATEGY FOR DOUBLE PROBE DROPLETS FOR SPECIFIC DETECTION OF CIRCULATING DNA MOLECULES SPECIFIC TO A TISSUE
WO2019012542A1 (en) * 2017-07-13 2019-01-17 Yissum Research Development Company Of The Hebrew University Of Jerusalem Ltd. DETECTION OF SPECIFIC DNA FROM A FABRIC
US10648025B2 (en) 2017-12-13 2020-05-12 Exact Sciences Development Company, Llc Multiplex amplification detection assay II
CN108048570A (zh) * 2017-12-29 2018-05-18 韩林志 用于结直肠癌相关基因Septin9甲基化检测的引物对、试剂盒及方法
CN110283913A (zh) * 2019-07-21 2019-09-27 广州奥百阕谱生物科技有限公司 Rassf1a基因甲基化状态检测试剂盒及其应用
WO2025147442A1 (en) * 2024-01-02 2025-07-10 Grail, Inc. Rapid bisulfite conversion and recovery of nucleic acid molecules

Family Cites Families (27)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
DE3525072A1 (de) 1985-07-13 1987-01-22 Basf Ag Verfahren zur herstellung von ueber o,o'-methylenether verknuepften phenolharzen und deren verwendung
DE3924052A1 (de) 1989-07-21 1991-01-24 Bayer Ag N- (indol-6-yl)-heterocyclen
CA2062918A1 (en) 1991-04-01 1992-10-02 Richard A. Carpenter Method for operating a networked computer system to minimize data conversion overhead
EP0833319A3 (en) 1993-01-21 2002-04-03 Matsushita Electric Industrial Co., Ltd. Disc-shaped recording medium
US5786146A (en) 1996-06-03 1998-07-28 The Johns Hopkins University School Of Medicine Method of detection of methylated nucleic acid using agents which modify unmethylated cytosine and distinguishing modified methylated and non-methylated nucleic acids
US6251594B1 (en) 1997-06-09 2001-06-26 Usc/Norris Comprehensive Cancer Ctr. Cancer diagnostic method based upon DNA methylation differences
DE19754482A1 (de) 1997-11-27 1999-07-01 Epigenomics Gmbh Verfahren zur Herstellung komplexer DNA-Methylierungs-Fingerabdrücke
GB9812768D0 (en) 1998-06-13 1998-08-12 Zeneca Ltd Methods
US6277607B1 (en) 1999-05-24 2001-08-21 Sanjay Tyagi High specificity primers, amplification methods and kits
DE19957827C2 (de) 1999-11-25 2003-06-12 Epigenomics Ag Verwendung eines Oligomer-Arrays mit PNA- und/oder DNA-Oligomeren auf einer Oberfläche
DE10010280B4 (de) 2000-02-25 2006-08-10 Epigenomics Ag Verfahren zur Detektion von Cytosin-Methylierung in DNA Proben
DE10010281B4 (de) 2000-02-25 2005-03-10 Epigenomics Ag Ligase/Polymerase-Verfahren zur Detektion von Cytosin-Methylierung in DNA Proben
DE10010282B4 (de) 2000-02-25 2006-11-16 Epigenomics Ag Verfahren zur Detektion von Cytosin-Methylierung in DNA Proben
DE10029915B4 (de) 2000-06-19 2005-06-16 Epigenomics Ag Verfahren zum Nachweis von Cytosin-Methylierungen
US7214485B2 (en) 2000-08-25 2007-05-08 Lovelace Respiratory Research Institute Nested methylation-specific polymerase chain reaction cancer detection method
IL154663A0 (en) 2000-09-01 2003-09-17 Epigenomics Ag Method for determining the degree of methylation of defined cytosines in genomic dna in the sequence context 5'-cpg-3'
DE10112515B4 (de) 2001-03-09 2004-02-12 Epigenomics Ag Verfahren zum Nachweis von Cytosin-Methylierungsmustern mit hoher Sensitivität
US6927028B2 (en) 2001-08-31 2005-08-09 Chinese University Of Hong Kong Non-invasive methods for detecting non-host DNA in a host using epigenetic differences between the host and non-host DNA
DE10338308B4 (de) 2003-08-15 2006-10-19 Epigenomics Ag Verfahren zum Nachweis von Cytosin-Methylierungen in DNA
CA2540310A1 (en) 2003-10-09 2005-04-28 Epigenomics Ag Improved bisulfite conversion of dna
WO2007039101A1 (en) 2005-09-30 2007-04-12 Epigenomics Ag Method for the quantification of nucleic acids, in particular bisulfite treated dna
ES2787454T3 (es) 2004-09-30 2020-10-16 Epigenomics Ag Método para proveer fragmentos de ADN derivados de una muestra archivada
WO2006040187A2 (en) 2004-10-11 2006-04-20 Epigenomics Ag A method for the carry-over protection in dna amplification systems targeting methylation analysis achieved by a modified pre-treatment of nucleic acids
EP1693468A1 (en) 2005-02-16 2006-08-23 Epigenomics AG Method for determining the methylation pattern of a polynucleic acid
EP2803734B1 (en) 2005-04-01 2017-09-20 Epigenomics AG Improved bisulfite conversion of DNA
EA013634B1 (ru) 2005-04-15 2010-06-30 Эпиджиномикс Аг Способы и нуклеиновые кислоты для анализов клеточных пролиферативных нарушений
WO2006113770A1 (en) * 2005-04-15 2006-10-26 Epigenomics Ag A method for providing dna fragments derived from a remote sample

Also Published As

Publication number Publication date
HRP20200059T1 (hr) 2020-04-03
SI3101141T1 (sl) 2020-03-31
EP3101141A2 (en) 2016-12-07
EP2479289A2 (en) 2012-07-25
EP2152902A2 (en) 2010-02-17
US20110009277A1 (en) 2011-01-13
LT3101141T (lt) 2020-03-10
HRP20160425T1 (hr) 2016-08-12
US8623599B2 (en) 2014-01-07
WO2008149237A2 (en) 2008-12-11
EP2479289B1 (en) 2016-04-06
DK2479289T3 (en) 2016-05-02
DK3101141T3 (da) 2020-02-03
ES2769841T3 (es) 2020-06-29
WO2008149237A3 (en) 2009-06-04
HK1172656A1 (en) 2013-04-26
SI2479289T1 (sl) 2016-10-28
CY1118259T1 (el) 2017-06-28
HUE028727T2 (en) 2017-01-30
EP3101141A3 (en) 2017-01-11
EP3101141B1 (en) 2019-10-16
EP2479289A3 (en) 2013-06-19
PL2479289T3 (pl) 2016-10-31

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