ATE510024T1 - Verfahren zur herstellung eines gepaarten tag aus einer nukleinsäuresequenz sowie verfahren zur verwendung davon - Google Patents

Verfahren zur herstellung eines gepaarten tag aus einer nukleinsäuresequenz sowie verfahren zur verwendung davon

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Publication number
ATE510024T1
ATE510024T1 AT04810142T AT04810142T ATE510024T1 AT E510024 T1 ATE510024 T1 AT E510024T1 AT 04810142 T AT04810142 T AT 04810142T AT 04810142 T AT04810142 T AT 04810142T AT E510024 T1 ATE510024 T1 AT E510024T1
Authority
AT
Austria
Prior art keywords
nucleic acid
acid sequence
restriction endonuclease
paired
producing
Prior art date
Application number
AT04810142T
Other languages
English (en)
Inventor
Douglas Smith
Joel Malek
Kevin Mckernan
Original Assignee
Advanced Genetic Analysis Corp Ab
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First worldwide family litigation filed litigation Critical https://patents.darts-ip.com/?family=34549481&utm_source=google_patent&utm_medium=platform_link&utm_campaign=public_patent_search&patent=ATE510024(T1) "Global patent litigation dataset” by Darts-ip is licensed under a Creative Commons Attribution 4.0 International License.
Application filed by Advanced Genetic Analysis Corp Ab filed Critical Advanced Genetic Analysis Corp Ab
Application granted granted Critical
Publication of ATE510024T1 publication Critical patent/ATE510024T1/de

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    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6806Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12PFERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
    • C12P19/00Preparation of compounds containing saccharide radicals
    • C12P19/26Preparation of nitrogen-containing carbohydrates
    • C12P19/28N-glycosides
    • C12P19/30Nucleotides
    • C12P19/34Polynucleotides, e.g. nucleic acids, oligoribonucleotides
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813Hybridisation assays
    • C12Q1/6816Hybridisation assays characterised by the detection means

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  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Molecular Biology (AREA)
  • Analytical Chemistry (AREA)
  • General Engineering & Computer Science (AREA)
  • Genetics & Genomics (AREA)
  • Microbiology (AREA)
  • General Health & Medical Sciences (AREA)
  • Biotechnology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biochemistry (AREA)
  • Immunology (AREA)
  • Physics & Mathematics (AREA)
  • Biophysics (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • General Chemical & Material Sciences (AREA)
  • Enzymes And Modification Thereof (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
AT04810142T 2003-10-31 2004-10-29 Verfahren zur herstellung eines gepaarten tag aus einer nukleinsäuresequenz sowie verfahren zur verwendung davon ATE510024T1 (de)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US51608003P 2003-10-31 2003-10-31
PCT/US2004/036141 WO2005042781A2 (en) 2003-10-31 2004-10-29 Methods for producing a paired tag from a nucleic acid sequence and methods of use thereof

Publications (1)

Publication Number Publication Date
ATE510024T1 true ATE510024T1 (de) 2011-06-15

Family

ID=34549481

Family Applications (1)

Application Number Title Priority Date Filing Date
AT04810142T ATE510024T1 (de) 2003-10-31 2004-10-29 Verfahren zur herstellung eines gepaarten tag aus einer nukleinsäuresequenz sowie verfahren zur verwendung davon

Country Status (4)

Country Link
US (4) US20060024681A1 (de)
EP (2) EP1682680B2 (de)
AT (1) ATE510024T1 (de)
WO (1) WO2005042781A2 (de)

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* Cited by examiner, † Cited by third party
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US9822395B2 (en) 2017-11-21
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US20100028888A1 (en) 2010-02-04
US9309560B2 (en) 2016-04-12
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