DK3572527T3 - Fremgangsmåder og præparater til fremstilling af nukleinsyrebiblioteker - Google Patents
Fremgangsmåder og præparater til fremstilling af nukleinsyrebiblioteker Download PDFInfo
- Publication number
- DK3572527T3 DK3572527T3 DK19167673.3T DK19167673T DK3572527T3 DK 3572527 T3 DK3572527 T3 DK 3572527T3 DK 19167673 T DK19167673 T DK 19167673T DK 3572527 T3 DK3572527 T3 DK 3572527T3
- Authority
- DK
- Denmark
- Prior art keywords
- preparations
- manufacture
- methods
- nucleic acid
- acid libraries
- Prior art date
Links
- 238000004519 manufacturing process Methods 0.000 title 1
- 238000000034 method Methods 0.000 title 1
- 150000007523 nucleic acids Chemical class 0.000 title 1
- 102000039446 nucleic acids Human genes 0.000 title 1
- 108020004707 nucleic acids Proteins 0.000 title 1
- 238000002360 preparation method Methods 0.000 title 1
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6806—Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/1034—Isolating an individual clone by screening libraries
- C12N15/1093—General methods of preparing gene libraries, not provided for in other subgroups
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Health & Medical Sciences (AREA)
- Organic Chemistry (AREA)
- Engineering & Computer Science (AREA)
- Genetics & Genomics (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Biotechnology (AREA)
- General Engineering & Computer Science (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Molecular Biology (AREA)
- Biochemistry (AREA)
- Microbiology (AREA)
- General Health & Medical Sciences (AREA)
- Analytical Chemistry (AREA)
- Biophysics (AREA)
- Physics & Mathematics (AREA)
- Biomedical Technology (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Immunology (AREA)
- Plant Pathology (AREA)
- Crystallography & Structural Chemistry (AREA)
- Bioinformatics & Computational Biology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201361892220P | 2013-10-17 | 2013-10-17 | |
| US201361914204P | 2013-12-10 | 2013-12-10 | |
| EP14796335.9A EP3058092B1 (en) | 2013-10-17 | 2014-10-16 | Methods and compositions for preparing nucleic acid libraries |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| DK3572527T3 true DK3572527T3 (da) | 2021-08-23 |
Family
ID=51871288
Family Applications (2)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| DK14796335.9T DK3058092T3 (da) | 2013-10-17 | 2014-10-16 | Fremgangsmåder og præparater til fremstilling af nukleinsyrebiblioteker |
| DK19167673.3T DK3572527T3 (da) | 2013-10-17 | 2014-10-16 | Fremgangsmåder og præparater til fremstilling af nukleinsyrebiblioteker |
Family Applications Before (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| DK14796335.9T DK3058092T3 (da) | 2013-10-17 | 2014-10-16 | Fremgangsmåder og præparater til fremstilling af nukleinsyrebiblioteker |
Country Status (6)
| Country | Link |
|---|---|
| US (5) | US10294511B2 (da) |
| EP (3) | EP3875601A1 (da) |
| DK (2) | DK3058092T3 (da) |
| ES (1) | ES2885191T3 (da) |
| HU (1) | HUE045954T2 (da) |
| WO (1) | WO2015057985A1 (da) |
Families Citing this family (59)
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| US8835358B2 (en) | 2009-12-15 | 2014-09-16 | Cellular Research, Inc. | Digital counting of individual molecules by stochastic attachment of diverse labels |
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| CN105705659B (zh) | 2013-08-28 | 2019-11-29 | 贝克顿迪金森公司 | 大规模平行单细胞分析 |
| US20150353989A1 (en) * | 2014-06-09 | 2015-12-10 | Illumina Cambridge Limited | Sample preparation for nucleic acid amplification |
| EP3164489B1 (en) * | 2014-07-03 | 2020-05-13 | Rhodx, Inc. | Tagging and assessing a target sequence |
| WO2016138496A1 (en) | 2015-02-27 | 2016-09-01 | Cellular Research, Inc. | Spatially addressable molecular barcoding |
| CN107406888A (zh) | 2015-03-30 | 2017-11-28 | 赛卢拉研究公司 | 用于组合条形编码的方法和组合物 |
| EP3286326B1 (en) | 2015-04-23 | 2025-01-22 | Becton, Dickinson and Company | Method for whole transcriptome amplification |
| CN115261468A (zh) | 2015-07-06 | 2022-11-01 | 伊卢米纳剑桥有限公司 | 用于核酸扩增的样品制备 |
| WO2017044574A1 (en) | 2015-09-11 | 2017-03-16 | Cellular Research, Inc. | Methods and compositions for nucleic acid library normalization |
| CN108350492A (zh) * | 2015-11-05 | 2018-07-31 | 通用电气公司 | 连接酶辅助的核酸环化和扩增 |
| WO2017160686A1 (en) * | 2016-03-15 | 2017-09-21 | Georgetown University | Next-generation sequencing to identify abo blood group |
| US10301677B2 (en) | 2016-05-25 | 2019-05-28 | Cellular Research, Inc. | Normalization of nucleic acid libraries |
| US10640763B2 (en) | 2016-05-31 | 2020-05-05 | Cellular Research, Inc. | Molecular indexing of internal sequences |
| US10202641B2 (en) | 2016-05-31 | 2019-02-12 | Cellular Research, Inc. | Error correction in amplification of samples |
| IL265478B2 (en) | 2016-09-26 | 2024-10-01 | Becton Dickinson Co | Measurement of protein expression using reagents with barcoded oligonucleotide sequences |
| CN110312825A (zh) | 2016-10-24 | 2019-10-08 | 吉内恩福赛克公司 | 隐藏核酸内存在的信息 |
| KR102061396B1 (ko) * | 2016-11-04 | 2019-12-31 | 울산대학교 산학협력단 | 엔도뉴클레이즈를 이용한 ffpe 조직 유래 dna 라이브러리 제작 방법 |
| US11359192B1 (en) * | 2016-11-04 | 2022-06-14 | Genopeaks Co., Ltd. | Method for preparing DNA library derived from FFPE tissue using endonuclease |
| US11319583B2 (en) | 2017-02-01 | 2022-05-03 | Becton, Dickinson And Company | Selective amplification using blocking oligonucleotides |
| US10689684B2 (en) | 2017-02-14 | 2020-06-23 | Microsoft Technology Licensing, Llc | Modifications to polynucleotides for sequencing |
| US10930370B2 (en) | 2017-03-03 | 2021-02-23 | Microsoft Technology Licensing, Llc | Polynucleotide sequencer tuned to artificial polynucleotides |
| CN108624584A (zh) * | 2017-03-16 | 2018-10-09 | 上海融享生物科技有限公司 | 一种针对ctDNA低频检测的文库构建方法 |
| JP7536450B2 (ja) | 2017-06-05 | 2024-08-20 | ベクトン・ディキンソン・アンド・カンパニー | 単一細胞用のサンプルインデックス付加 |
| WO2019070598A1 (en) * | 2017-10-04 | 2019-04-11 | Toma Biosciences, Inc. | PREPARATION OF LIBRARIES FOR GENOME SEQUENCING |
| CA3302676A1 (en) | 2018-04-02 | 2026-05-13 | Grail, Inc. | Methylation markers and targeted methylation probe panels |
| EP3788170B1 (en) | 2018-05-03 | 2025-01-01 | Becton, Dickinson and Company | Molecular barcoding on opposite transcript ends |
| CA3097976A1 (en) | 2018-05-03 | 2019-11-07 | Becton, Dickinson And Company | High throughput multiomics sample analysis |
| EP3856903A4 (en) | 2018-09-27 | 2022-07-27 | Grail, LLC | METHYLATION MARKER AND TARGETED METHYLATION PROBE PANEL |
| EP3861134B1 (en) | 2018-10-01 | 2024-09-04 | Becton, Dickinson and Company | Determining 5' transcript sequences |
| US11926821B2 (en) | 2018-10-22 | 2024-03-12 | The Chinese University Of Hong Kong | Cell-free DNA quality |
| EP3877520B1 (en) | 2018-11-08 | 2025-03-19 | Becton, Dickson And Company | Whole transcriptome analysis of single cells using random priming |
| EP3894552B1 (en) | 2018-12-13 | 2026-01-28 | Becton, Dickinson and Company | Selective extension in single cell whole transcriptome analysis |
| EP3914728B1 (en) | 2019-01-23 | 2023-04-05 | Becton, Dickinson and Company | Oligonucleotides associated with antibodies |
| CN113454234B (zh) | 2019-02-14 | 2025-03-18 | 贝克顿迪金森公司 | 杂合体靶向和全转录物组扩增 |
| WO2020236939A2 (en) * | 2019-05-23 | 2020-11-26 | Paradigm Diagnostics | Tissue preparation using nuclease |
| WO2021016239A1 (en) | 2019-07-22 | 2021-01-28 | Becton, Dickinson And Company | Single cell chromatin immunoprecipitation sequencing assay |
| GB201911515D0 (en) * | 2019-08-12 | 2019-09-25 | Univ London Queen Mary | Methods for generating a population of polynucleotide molecules |
| CN110511978A (zh) * | 2019-09-09 | 2019-11-29 | 北京优迅医学检验实验室有限公司 | Ffpe样本dna文库及其构建方法 |
| CN110669830B (zh) * | 2019-10-24 | 2023-05-23 | 裕策医疗器械江苏有限公司 | 一种低质量ffpe dna的处理方法、装置和存储介质 |
| EP4055160B1 (en) | 2019-11-08 | 2024-04-10 | Becton Dickinson and Company | Using random priming to obtain full-length v(d)j information for immune repertoire sequencing |
| EP4083278A4 (en) | 2019-11-15 | 2024-02-28 | Kao Corporation | METHOD FOR CREATING A SEQUENCING LIBRARY |
| CN115279919A (zh) | 2020-01-13 | 2022-11-01 | 贝克顿迪金森公司 | 使用含有du的寡核苷酸的细胞捕获 |
| CN115244184A (zh) | 2020-01-13 | 2022-10-25 | 贝克顿迪金森公司 | 用于定量蛋白和rna的方法和组合物 |
| WO2021155057A1 (en) | 2020-01-29 | 2021-08-05 | Becton, Dickinson And Company | Barcoded wells for spatial mapping of single cells through sequencing |
| US11211144B2 (en) | 2020-02-18 | 2021-12-28 | Tempus Labs, Inc. | Methods and systems for refining copy number variation in a liquid biopsy assay |
| US11211147B2 (en) | 2020-02-18 | 2021-12-28 | Tempus Labs, Inc. | Estimation of circulating tumor fraction using off-target reads of targeted-panel sequencing |
| US11475981B2 (en) | 2020-02-18 | 2022-10-18 | Tempus Labs, Inc. | Methods and systems for dynamic variant thresholding in a liquid biopsy assay |
| US12153043B2 (en) | 2020-02-25 | 2024-11-26 | Becton, Dickinson And Company | Bi-specific probes to enable the use of single-cell samples as single color compensation control |
| WO2021231779A1 (en) | 2020-05-14 | 2021-11-18 | Becton, Dickinson And Company | Primers for immune repertoire profiling |
| CN115803445A (zh) | 2020-06-02 | 2023-03-14 | 贝克顿迪金森公司 | 用于5撇基因表达测定的寡核苷酸和珠 |
| US11932901B2 (en) | 2020-07-13 | 2024-03-19 | Becton, Dickinson And Company | Target enrichment using nucleic acid probes for scRNAseq |
| WO2022026909A1 (en) | 2020-07-31 | 2022-02-03 | Becton, Dickinson And Company | Single cell assay for transposase-accessible chromatin |
| WO2022109343A1 (en) | 2020-11-20 | 2022-05-27 | Becton, Dickinson And Company | Profiling of highly expressed and lowly expressed proteins |
| US20240110223A1 (en) * | 2020-12-11 | 2024-04-04 | The Broad Institute, Inc. | Methods for duplex repair |
| CN116685850A (zh) | 2020-12-15 | 2023-09-01 | 贝克顿迪金森公司 | 单细胞分泌组分析 |
| CN112680794A (zh) * | 2020-12-28 | 2021-04-20 | 深圳海普洛斯医学检验实验室 | 一种应用于ngs平台的超微量核酸样本建库方法 |
| EP4215619A1 (en) * | 2022-01-21 | 2023-07-26 | Genomill Health Oy | Methods for sensitive and accurate parallel quantification of nucleic acids |
| CA3265783A1 (en) * | 2022-08-31 | 2024-03-07 | Saga Diagnostics Ab | PREPARATION OF BANK PACKS FROM FIXED SAMPLES |
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| US5714330A (en) | 1994-04-04 | 1998-02-03 | Lynx Therapeutics, Inc. | DNA sequencing by stepwise ligation and cleavage |
| ATE226983T1 (de) | 1994-08-19 | 2002-11-15 | Pe Corp Ny | Gekoppeltes ampflikation- und ligationverfahren |
| US5695934A (en) | 1994-10-13 | 1997-12-09 | Lynx Therapeutics, Inc. | Massively parallel sequencing of sorted polynucleotides |
| US5750341A (en) | 1995-04-17 | 1998-05-12 | Lynx Therapeutics, Inc. | DNA sequencing by parallel oligonucleotide extensions |
| GB9620209D0 (en) | 1996-09-27 | 1996-11-13 | Cemu Bioteknik Ab | Method of sequencing DNA |
| GB9626815D0 (en) | 1996-12-23 | 1997-02-12 | Cemu Bioteknik Ab | Method of sequencing DNA |
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| JP2001519538A (ja) | 1997-10-10 | 2001-10-23 | プレジデント・アンド・フェローズ・オブ・ハーバード・カレッジ | 核酸アレイのレプリカ増幅 |
| US6485944B1 (en) | 1997-10-10 | 2002-11-26 | President And Fellows Of Harvard College | Replica amplification of nucleic acid arrays |
| US6511803B1 (en) | 1997-10-10 | 2003-01-28 | President And Fellows Of Harvard College | Replica amplification of nucleic acid arrays |
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| DE602004026033D1 (de) | 2003-01-29 | 2010-04-29 | 454 Corp | Zweiendige sequenzierung |
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| DK1907571T3 (da) | 2005-06-15 | 2017-08-21 | Complete Genomics Inc | Nukleinsyreanalyse ved hjælp af tilfældige blandinger af ikke-overlappende fragmenter |
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| US20090275486A1 (en) * | 2006-05-16 | 2009-11-05 | Nurith Kurn | Nucleic acid separation and purification method based on reversible charge interactions |
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| EP2677309B9 (en) | 2006-12-14 | 2014-11-19 | Life Technologies Corporation | Methods for sequencing a nucleic acid using large scale FET arrays, configured to measure a limited pH range |
| US7862999B2 (en) * | 2007-01-17 | 2011-01-04 | Affymetrix, Inc. | Multiplex targeted amplification using flap nuclease |
| WO2009012984A1 (en) * | 2007-07-26 | 2009-01-29 | Roche Diagnostics Gmbh | Target preparation for parallel sequencing of complex genomes |
| US20100301398A1 (en) | 2009-05-29 | 2010-12-02 | Ion Torrent Systems Incorporated | Methods and apparatus for measuring analytes |
| US20100137143A1 (en) | 2008-10-22 | 2010-06-03 | Ion Torrent Systems Incorporated | Methods and apparatus for measuring analytes |
| EP2464738A4 (en) * | 2009-08-12 | 2013-05-01 | Nugen Technologies Inc | METHODS, COMPOSITIONS, AND KITS FOR GENERATING NUCLEIC ACID PRODUCTS SUBSTANTIALLY FREE OF MATRIX NUCLEIC ACID |
| US8409060B2 (en) | 2010-05-05 | 2013-04-02 | Gee Hoo Fitec Corp. | Exercise bike for rehabilitation |
| EP2714928B1 (en) * | 2011-05-27 | 2017-08-02 | Life Technologies Corporation | Methods for manipulating biomolecules |
| WO2013085918A1 (en) * | 2011-12-05 | 2013-06-13 | The Regents Of The University Of California | Methods and compostions for generating polynucleic acid fragments |
| WO2014018093A1 (en) | 2012-07-26 | 2014-01-30 | Illumina, Inc. | Compositions and methods for the amplification of nucleic acids |
-
2014
- 2014-10-16 ES ES19167673T patent/ES2885191T3/es active Active
- 2014-10-16 EP EP21171323.5A patent/EP3875601A1/en active Pending
- 2014-10-16 DK DK14796335.9T patent/DK3058092T3/da active
- 2014-10-16 DK DK19167673.3T patent/DK3572527T3/da active
- 2014-10-16 EP EP19167673.3A patent/EP3572527B1/en active Active
- 2014-10-16 US US15/029,103 patent/US10294511B2/en active Active
- 2014-10-16 HU HUE14796335A patent/HUE045954T2/hu unknown
- 2014-10-16 EP EP14796335.9A patent/EP3058092B1/en active Active
- 2014-10-16 WO PCT/US2014/060942 patent/WO2015057985A1/en not_active Ceased
-
2019
- 2019-04-02 US US16/372,793 patent/US10683532B2/en active Active
- 2019-12-04 US US16/703,527 patent/US10988797B2/en active Active
-
2020
- 2020-10-12 US US17/068,062 patent/US11512340B2/en active Active
-
2022
- 2022-11-01 US US18/051,836 patent/US12227791B2/en active Active
Also Published As
| Publication number | Publication date |
|---|---|
| US10294511B2 (en) | 2019-05-21 |
| EP3058092B1 (en) | 2019-05-22 |
| EP3058092A1 (en) | 2016-08-24 |
| US20190292583A1 (en) | 2019-09-26 |
| US20200181687A1 (en) | 2020-06-11 |
| WO2015057985A1 (en) | 2015-04-23 |
| EP3572527B1 (en) | 2021-05-26 |
| US20160265027A1 (en) | 2016-09-15 |
| US20210180113A1 (en) | 2021-06-17 |
| EP3875601A1 (en) | 2021-09-08 |
| DK3058092T3 (da) | 2019-08-19 |
| US12227791B2 (en) | 2025-02-18 |
| US10988797B2 (en) | 2021-04-27 |
| ES2885191T3 (es) | 2021-12-13 |
| HUE045954T2 (hu) | 2020-01-28 |
| EP3572527A1 (en) | 2019-11-27 |
| US20230272453A1 (en) | 2023-08-31 |
| US11512340B2 (en) | 2022-11-29 |
| US10683532B2 (en) | 2020-06-16 |
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