EP0904286A4 - Clivage invasif d'acides nucleiques - Google Patents

Clivage invasif d'acides nucleiques

Info

Publication number
EP0904286A4
EP0904286A4 EP97903931A EP97903931A EP0904286A4 EP 0904286 A4 EP0904286 A4 EP 0904286A4 EP 97903931 A EP97903931 A EP 97903931A EP 97903931 A EP97903931 A EP 97903931A EP 0904286 A4 EP0904286 A4 EP 0904286A4
Authority
EP
European Patent Office
Prior art keywords
nucleic acid
specific
present
acid sequences
nucleic acids
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Withdrawn
Application number
EP97903931A
Other languages
German (de)
English (en)
Other versions
EP0904286A1 (fr
Inventor
Jeff G Hall
Victor I Lyamichev
James R Prudent
Mary Ann D Brow
Michael W Kaiser
Natasha Lyamichev
David Michael Olive
James E Dahlberg
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Third Wave Technologies Inc
Original Assignee
Third Wave Technologies Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from US08/599,491 external-priority patent/US5846717A/en
Priority claimed from US08/756,386 external-priority patent/US5985557A/en
Priority claimed from US08/758,314 external-priority patent/US6090606A/en
Application filed by Third Wave Technologies Inc filed Critical Third Wave Technologies Inc
Priority to EP08020055A priority Critical patent/EP2058407B1/fr
Priority to EP05016686A priority patent/EP1634890B1/fr
Priority to EP10179329A priority patent/EP2354252B1/fr
Publication of EP0904286A1 publication Critical patent/EP0904286A1/fr
Publication of EP0904286A4 publication Critical patent/EP0904286A4/fr
Withdrawn legal-status Critical Current

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6816—Hybridisation assays characterised by the detection means
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6816—Hybridisation assays characterised by the detection means
    • C12Q1/6823—Release of bound markers
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6827—Hybridisation assays for detection of mutation or polymorphism
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6827—Hybridisation assays for detection of mutation or polymorphism
    • C12Q1/683—Hybridisation assays for detection of mutation or polymorphism involving restriction enzymes, e.g. restriction fragment length polymorphism [RFLP]

Landscapes

  • Chemical & Material Sciences (AREA)
  • Organic Chemistry (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Zoology (AREA)
  • Engineering & Computer Science (AREA)
  • Immunology (AREA)
  • General Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Molecular Biology (AREA)
  • Analytical Chemistry (AREA)
  • Biotechnology (AREA)
  • Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biophysics (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Enzymes And Modification Thereof (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
  • Micro-Organisms Or Cultivation Processes Thereof (AREA)
  • Pharmaceuticals Containing Other Organic And Inorganic Compounds (AREA)
EP97903931A 1996-01-24 1997-01-22 Clivage invasif d'acides nucleiques Withdrawn EP0904286A4 (fr)

Priority Applications (3)

Application Number Priority Date Filing Date Title
EP08020055A EP2058407B1 (fr) 1996-01-24 1997-01-22 Division invasive d'acides nucléiques
EP05016686A EP1634890B1 (fr) 1996-01-24 1997-01-22 Clivage invasif d'acides nucléiques
EP10179329A EP2354252B1 (fr) 1996-01-24 1997-01-22 Division invasive d'acides nucléiques

Applications Claiming Priority (11)

Application Number Priority Date Filing Date Title
US599491 1990-10-17
US08/599,491 US5846717A (en) 1996-01-24 1996-01-24 Detection of nucleic acid sequences by invader-directed cleavage
US682853 1996-07-12
US08/682,853 US6001567A (en) 1996-01-24 1996-07-12 Detection of nucleic acid sequences by invader-directed cleavage
US08/756,386 US5985557A (en) 1996-01-24 1996-11-29 Invasive cleavage of nucleic acids
US756386 1996-11-29
US08/759,038 US6090543A (en) 1996-01-24 1996-12-02 Cleavage of nucleic acids
US759038 1996-12-02
US08/758,314 US6090606A (en) 1996-01-24 1996-12-02 Cleavage agents
US758314 1996-12-02
PCT/US1997/001072 WO1997027214A1 (fr) 1996-01-24 1997-01-22 Clivage invasif d'acides nucleiques

Related Child Applications (1)

Application Number Title Priority Date Filing Date
EP05016686A Division EP1634890B1 (fr) 1996-01-24 1997-01-22 Clivage invasif d'acides nucléiques

Publications (2)

Publication Number Publication Date
EP0904286A1 EP0904286A1 (fr) 1999-03-31
EP0904286A4 true EP0904286A4 (fr) 2004-01-14

Family

ID=27541970

Family Applications (2)

Application Number Title Priority Date Filing Date
EP05016686A Expired - Lifetime EP1634890B1 (fr) 1996-01-24 1997-01-22 Clivage invasif d'acides nucléiques
EP97903931A Withdrawn EP0904286A4 (fr) 1996-01-24 1997-01-22 Clivage invasif d'acides nucleiques

Family Applications Before (1)

Application Number Title Priority Date Filing Date
EP05016686A Expired - Lifetime EP1634890B1 (fr) 1996-01-24 1997-01-22 Clivage invasif d'acides nucléiques

Country Status (8)

Country Link
EP (2) EP1634890B1 (fr)
JP (2) JP3665648B2 (fr)
AT (1) ATE414793T1 (fr)
AU (1) AU731062B2 (fr)
CA (1) CA2243353C (fr)
DK (1) DK1634890T3 (fr)
ES (1) ES2317113T3 (fr)
WO (1) WO1997027214A1 (fr)

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US7045289B2 (en) 1991-09-09 2006-05-16 Third Wave Technologies, Inc. Detection of RNA Sequences
US5994069A (en) * 1996-01-24 1999-11-30 Third Wave Technologies, Inc. Detection of nucleic acids by multiple sequential invasive cleavages
US6759226B1 (en) 2000-05-24 2004-07-06 Third Wave Technologies, Inc. Enzymes for the detection of specific nucleic acid sequences
US7150982B2 (en) 1991-09-09 2006-12-19 Third Wave Technologies, Inc. RNA detection assays
US7527928B2 (en) 1996-11-29 2009-05-05 Third Wave Technologies, Inc. Reactions on a solid surface
US7432048B2 (en) 1996-11-29 2008-10-07 Third Wave Technologies, Inc. Reactions on a solid surface
AU781188B2 (en) * 1996-01-24 2005-05-12 Third Wave Technologies, Inc. Detection of nucleic acids by multiple sequential invasive cleavages
US6913881B1 (en) 1996-01-24 2005-07-05 Third Wave Technologies, Inc. Methods and compositions for detecting target sequences
US6780982B2 (en) 1996-07-12 2004-08-24 Third Wave Technologies, Inc. Charge tags and the separation of nucleic acid molecules
CA2273204C (fr) * 1996-11-29 2008-10-14 Third Wave Technologies, Inc. Agents de clivage ameliores
CA2289872C (fr) 1997-05-05 2007-07-31 Third Wave Technologies, Inc. Reactions dependant de la cible faisant appel a des oligonucleotides formant des ponts avec des structures
US6210880B1 (en) 1997-09-19 2001-04-03 Third Wave Technologies, Inc. Polymorphism analysis by nucleic acid structure probing with structure-bridging oligonucleotides
US6194149B1 (en) 1998-03-03 2001-02-27 Third Wave Technologies, Inc. Target-dependent reactions using structure-bridging oligonucleotides
US7101672B2 (en) 1998-05-05 2006-09-05 Third Wave Technologies, Inc. Target-dependent reactions using structure-bridging oligonucleotides
US6251638B1 (en) 1997-05-30 2001-06-26 Diagen Corporation Methods for detection of nucleic acid sequences in urine
US8182991B1 (en) 1997-11-26 2012-05-22 Third Wave Technologies, Inc. FEN-1 endonucleases, mixtures and cleavage methods
US6528254B1 (en) * 1999-10-29 2003-03-04 Stratagene Methods for detection of a target nucleic acid sequence
US7824859B2 (en) 1999-10-29 2010-11-02 Cytyc Corporation Methods for detection of a target nucleic acid by forming a cleavage structure using an RNA polymerase
US7118860B2 (en) 1999-10-29 2006-10-10 Stratagene California Methods for detection of a target nucleic acid by capture
US7838225B2 (en) 1999-10-29 2010-11-23 Hologic, Inc. Methods for detection of a target nucleic acid by forming a cleavage structure using a reverse transcriptase
WO2001073127A2 (fr) * 2000-03-27 2001-10-04 Applera Corporation Essai invasif ameliore
JP2004521606A (ja) * 2000-05-24 2004-07-22 サード・ウェーブ・テクノロジーズ・インク Ｒｎａの検出法
WO2001098537A2 (fr) 2000-06-17 2001-12-27 Third Wave Technologies, Inc. Sites d'hybridation accessibles a l'acide nucleique
JP2004507230A (ja) 2000-07-03 2004-03-11 アプレラ　コーポレイション ポリヌクレオチド配列アッセイ
WO2002070755A2 (fr) * 2000-11-15 2002-09-12 Third Wave Technologies, Inc. Endonucleases fen
EP1367136A4 (fr) * 2001-02-15 2005-01-12 Takara Bio Inc Procede de detection de polymorphisme de nucleotide
US7485443B2 (en) 2001-07-17 2009-02-03 Northwestern University Solid-phase reactions
US7303869B2 (en) 2001-07-17 2007-12-04 Northwestern University Solid-phase reactions
US20040014067A1 (en) 2001-10-12 2004-01-22 Third Wave Technologies, Inc. Amplification methods and compositions
GB0205455D0 (en) 2002-03-07 2002-04-24 Molecular Sensing Plc Nucleic acid probes, their synthesis and use
US7312033B2 (en) 2002-11-14 2007-12-25 Third Wave Technologies, Inc. CFTR allele detection assays
JP4230457B2 (ja) 2002-12-18 2009-02-25 サード・ウェーブ・テクノロジーズ・インク 低分子核酸の検出方法
US8206904B2 (en) 2002-12-18 2012-06-26 Third Wave Technologies, Inc. Detection of nucleic acids
US7297780B2 (en) 2003-01-06 2007-11-20 Third Wave Technologies, Inc. Reactive functional groups for preparation of modified nucleic acid
US7700750B2 (en) 2003-01-09 2010-04-20 Third Wave Technologies, Inc. Connexin allele detection assays
US20040161749A1 (en) 2003-01-24 2004-08-19 Hall Jeff G. 3' end tagged oligonucleotides
CA2552949C (fr) 2004-01-07 2012-10-02 Third Wave Technologies, Inc. Determination d'un genotype du virus de l'hepatite c
US7462451B2 (en) 2004-04-26 2008-12-09 Third Wave Technologies, Inc. Compositions for modifying nucleic acids
US7727721B2 (en) 2005-03-08 2010-06-01 California Institute Of Technology Hybridization chain reaction amplification for in situ imaging
US7939257B2 (en) 2005-05-12 2011-05-10 Third Wave Technologies, Inc. Polymorphic GHSR nucleic acids and uses thereof
EP1931806B1 (fr) 2005-10-07 2011-10-05 California Institute Of Technology Activation de la pkr par reaction en chaine d'hybridation
US7482127B2 (en) 2005-11-03 2009-01-27 Third Wave Technologies, Inc. Nucleic acid detection assays employing blocker oligonucleotides
US7674924B2 (en) 2006-05-22 2010-03-09 Third Wave Technologies, Inc. Compositions, probes, and conjugates and uses thereof
KR101105564B1 (ko) 2006-06-01 2012-01-17 써드 웨이브 테크놀로지스, 아이앤씨. 핵산의 검출
US7759062B2 (en) 2006-06-09 2010-07-20 Third Wave Technologies, Inc. T-structure invasive cleavage assays, consistent nucleic acid dispensing, and low level target nucleic acid detection
EP2079754B1 (fr) 2006-10-04 2017-03-15 Third Wave Technologies, Inc. Amorces snap-back et structures en epingle a cheveux detectables
WO2008144562A1 (fr) 2007-05-16 2008-11-27 California Institute Of Technology Motif polyvalent d'acide nucléique en épingle à cheveux pour la programmation de voies d'auto-assemblage biomoléculaire
CA2697411C (fr) 2007-09-07 2015-04-14 Third Wave Technologies, Inc. Procedes et applications pour la quantification d'une cible
US8497364B2 (en) 2008-02-27 2013-07-30 California Institute Of Technology Triggered RNAi
WO2009117327A2 (fr) 2008-03-15 2009-09-24 Hologic, Inc. Compositions et procédés pour analyse de molécules d’acide nucléique pendant des réactions d’amplification
EP2853601B1 (fr) 2008-07-18 2016-09-21 TrovaGene, Inc. Procédés de détection à base de PCR de séquences d'acide nucléique ultracourt
US8658780B2 (en) 2010-05-18 2014-02-25 California Institute Of Technology Triggered covalent probes for imaging and silencing genetic expression
US8877438B2 (en) 2010-07-20 2014-11-04 California Institute Of Technology Self-assembled polynucleotide structure
US8962241B2 (en) 2010-07-20 2015-02-24 California Institute Of Technology Triggered molecular geometry based bioimaging probes
US9834439B2 (en) 2010-07-20 2017-12-05 California Institute Of Technology Biomolecular self-assembly
ES2645418T3 (es) 2011-12-22 2017-12-05 Ibis Biosciences, Inc. Amplificación de una secuencia de un ácido ribonucleico
CA2877236C (fr) * 2012-06-20 2021-03-09 Toray Industries, Inc. Procede de detection d'un acide nucleique et kit de detection afferent
WO2014158628A1 (fr) 2013-03-14 2014-10-02 Hologic, Inc. Compositions et procédés d'analyse de molécules d'acide nucléique
CN105229176A (zh) 2013-03-15 2016-01-06 特罗瓦基因公司 尿液中核酸的检测
US9856472B2 (en) 2013-07-01 2018-01-02 California Institute Of Technology Small conditional RNAs
WO2016179093A1 (fr) 2015-05-01 2016-11-10 Gen-Probe Incorporated Essais de clivage invasif multiplexe
IL290679B2 (en) 2016-07-05 2023-10-01 California Inst Of Techn Hybridization chain reaction based on a minimal initiator
CA3034617A1 (fr) 2016-08-30 2018-03-08 California Institute Of Technology Immunohistochimie par reaction en chaine d'hybridation
JP6997287B2 (ja) 2017-07-10 2022-02-03 ジェン－プローブ・インコーポレーテッド 試料割り当てパラメータを使用した核酸増幅のための分析システムおよび方法
US11859257B2 (en) 2017-08-11 2024-01-02 Gen-Probe Incorporated Compositions and methods for detecting Staphylococcus aureus
WO2019118550A1 (fr) 2017-12-13 2019-06-20 Gen-Probe Incorporated Procédés de traitement d'un échantillon biologique
EP3724354A1 (fr) 2017-12-15 2020-10-21 Gen-Probe Incorporated Compositions et méthodes pour la détection de clostridium difficile toxigène
EP3746225B1 (fr) 2018-01-29 2024-10-30 Gen-Probe Incorporated Systèmes et procédés analytiques
JP7470095B2 (ja) 2018-07-10 2024-04-17 ジェン－プローブ・インコーポレーテッド 核酸を検出および定量するための方法およびシステム
WO2020142347A2 (fr) 2018-12-31 2020-07-09 Gen-Probe Incorporated Systèmes et procédés de remplissage de cartouches à puits multiples avec des réactifs solides
EP3914732A1 (fr) 2019-01-25 2021-12-01 Gen-Probe Incorporated Détection de mycoplasma genitalium résistant aux médicaments
WO2020226969A2 (fr) 2019-05-03 2020-11-12 Gen-Probe Incorporated Système de transport de réceptacle pour système analytique
CN111172164B (zh) * 2020-03-09 2022-11-15 中国药科大学 一种用于任意核酸编辑的组合物及方法
CA3177256A1 (fr) 2020-10-21 2022-04-28 Gen-Probe Incorporated Systeme de gestion de conteneurs de fluide
WO2022164796A1 (fr) 2021-01-26 2022-08-04 California Institute Of Technology Arn guides conditionnels allostériques pour la régulation sélective de cellules de crispr/cas
CN113774141B (zh) * 2021-09-30 2024-02-27 重庆大学 一种用于双位点顺反式突变检测的引物、探针组合物及其应用
JP2025513875A (ja) * 2022-04-14 2025-04-30 ナショナル ユニヴァーシティー オブ シンガポール ポリヌクレオチド分析物を検出する方法
WO2024054924A1 (fr) 2022-09-08 2024-03-14 Gen-Probe Incorporated Procédé de détection d'analytes d'acides nucléiques à l'aide d'amorces à double spécificité

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WO1994029482A1 (fr) * 1993-06-04 1994-12-22 Third Wave Technologies, Inc. Nucleases 5' derivees d'adn-polymerase d'adn thermostable

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ATE217347T1 (de) * 1992-12-04 2002-05-15 Univ Yale Diagnose mittels signalverstärkung durch ein ribozym
US5422253A (en) * 1992-12-07 1995-06-06 Wisconsin Alumni Research Foundation Method of site specific nucleic acid cleavage
CA2203627C (fr) * 1994-11-09 2000-06-06 James E. Dahlberg Detection et identification rapides de variants de l'acide nucleique et d'agents pathogenes

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WO1994029482A1 (fr) * 1993-06-04 1994-12-22 Third Wave Technologies, Inc. Nucleases 5' derivees d'adn-polymerase d'adn thermostable

Also Published As

Publication number Publication date
CA2243353A1 (fr) 1997-07-31
ATE414793T1 (de) 2008-12-15
DK1634890T3 (da) 2009-03-09
EP1634890B1 (fr) 2008-11-19
EP0904286A1 (fr) 1999-03-31
EP1634890A1 (fr) 2006-03-15
AU731062B2 (en) 2001-03-22
WO1997027214A1 (fr) 1997-07-31
AU1836497A (en) 1997-08-20
JP2002515737A (ja) 2002-05-28
JP4295715B2 (ja) 2009-07-15
JP3665648B2 (ja) 2005-06-29
JP2005160481A (ja) 2005-06-23
ES2317113T3 (es) 2009-04-16
CA2243353C (fr) 2010-03-30

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