JPS62503099A - 固相支持体に結合した核酸 - Google Patents
固相支持体に結合した核酸Info
- Publication number
- JPS62503099A JPS62503099A JP61503417A JP50341786A JPS62503099A JP S62503099 A JPS62503099 A JP S62503099A JP 61503417 A JP61503417 A JP 61503417A JP 50341786 A JP50341786 A JP 50341786A JP S62503099 A JPS62503099 A JP S62503099A
- Authority
- JP
- Japan
- Prior art keywords
- beads
- probe
- labeled
- oligonucleotide
- hydroxylamine
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Granted
Links
- 102000039446 nucleic acids Human genes 0.000 title claims description 17
- 108020004707 nucleic acids Proteins 0.000 title claims description 17
- 150000007523 nucleic acids Chemical class 0.000 title claims description 17
- 239000007787 solid Substances 0.000 title description 3
- 238000000034 method Methods 0.000 claims description 34
- 238000010532 solid phase synthesis reaction Methods 0.000 claims description 7
- PLIKAWJENQZMHA-UHFFFAOYSA-N 4-aminophenol Chemical compound NC1=CC=C(O)C=C1 PLIKAWJENQZMHA-UHFFFAOYSA-N 0.000 claims description 6
- AVXURJPOCDRRFD-UHFFFAOYSA-N Hydroxylamine Chemical compound ON AVXURJPOCDRRFD-UHFFFAOYSA-N 0.000 claims description 5
- 150000008300 phosphoramidites Chemical class 0.000 claims description 5
- LFQSCWFLJHTTHZ-UHFFFAOYSA-N Ethanol Chemical group CCO LFQSCWFLJHTTHZ-UHFFFAOYSA-N 0.000 claims description 3
- 238000009833 condensation Methods 0.000 claims description 3
- 230000005494 condensation Effects 0.000 claims description 3
- BLFRQYKZFKYQLO-UHFFFAOYSA-N 4-aminobutan-1-ol Chemical compound NCCCCO BLFRQYKZFKYQLO-UHFFFAOYSA-N 0.000 claims description 2
- IQJMYPWABZWKTL-UHFFFAOYSA-N aminophosphonous acid;hydroxylamine Chemical class ON.NP(O)O IQJMYPWABZWKTL-UHFFFAOYSA-N 0.000 claims description 2
- WUGQZFFCHPXWKQ-UHFFFAOYSA-N Propanolamine Chemical compound NCCCO WUGQZFFCHPXWKQ-UHFFFAOYSA-N 0.000 claims 1
- 125000004432 carbon atom Chemical group C* 0.000 claims 1
- 239000011324 bead Substances 0.000 description 35
- 108091034117 Oligonucleotide Proteins 0.000 description 34
- 239000000523 sample Substances 0.000 description 34
- YBJHBAHKTGYVGT-ZKWXMUAHSA-N (+)-Biotin Chemical compound N1C(=O)N[C@@H]2[C@H](CCCCC(=O)O)SC[C@@H]21 YBJHBAHKTGYVGT-ZKWXMUAHSA-N 0.000 description 18
- 239000000243 solution Substances 0.000 description 16
- 125000006853 reporter group Chemical group 0.000 description 14
- 108091033319 polynucleotide Proteins 0.000 description 13
- 102000040430 polynucleotide Human genes 0.000 description 13
- 239000002157 polynucleotide Substances 0.000 description 13
- 238000002474 experimental method Methods 0.000 description 12
- 238000002372 labelling Methods 0.000 description 12
- 229960002685 biotin Drugs 0.000 description 10
- 239000011616 biotin Substances 0.000 description 10
- 239000000203 mixture Substances 0.000 description 10
- JLCPHMBAVCMARE-UHFFFAOYSA-N [3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methyl [5-(6-aminopurin-9-yl)-2-(hydroxymethyl)oxolan-3-yl] hydrogen phosphate Polymers Cc1cn(C2CC(OP(O)(=O)OCC3OC(CC3OP(O)(=O)OCC3OC(CC3O)n3cnc4c3nc(N)[nH]c4=O)n3cnc4c3nc(N)[nH]c4=O)C(COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3CO)n3cnc4c(N)ncnc34)n3ccc(N)nc3=O)n3cnc4c(N)ncnc34)n3ccc(N)nc3=O)n3ccc(N)nc3=O)n3ccc(N)nc3=O)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cc(C)c(=O)[nH]c3=O)n3cc(C)c(=O)[nH]c3=O)n3ccc(N)nc3=O)n3cc(C)c(=O)[nH]c3=O)n3cnc4c3nc(N)[nH]c4=O)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)O2)c(=O)[nH]c1=O JLCPHMBAVCMARE-UHFFFAOYSA-N 0.000 description 9
- 235000020958 biotin Nutrition 0.000 description 9
- 238000009396 hybridization Methods 0.000 description 8
- 239000002773 nucleotide Substances 0.000 description 8
- 125000003729 nucleotide group Chemical group 0.000 description 8
- 230000027455 binding Effects 0.000 description 7
- RTZKZFJDLAIYFH-UHFFFAOYSA-N Diethyl ether Chemical compound CCOCC RTZKZFJDLAIYFH-UHFFFAOYSA-N 0.000 description 6
- XEKOWRVHYACXOJ-UHFFFAOYSA-N Ethyl acetate Chemical compound CCOC(C)=O XEKOWRVHYACXOJ-UHFFFAOYSA-N 0.000 description 6
- OKKJLVBELUTLKV-UHFFFAOYSA-N Methanol Chemical compound OC OKKJLVBELUTLKV-UHFFFAOYSA-N 0.000 description 6
- 230000000295 complement effect Effects 0.000 description 6
- 150000002148 esters Chemical class 0.000 description 6
- 108090000623 proteins and genes Proteins 0.000 description 6
- 238000003786 synthesis reaction Methods 0.000 description 6
- 230000002285 radioactive effect Effects 0.000 description 5
- XLYOFNOQVPJJNP-UHFFFAOYSA-N water Substances O XLYOFNOQVPJJNP-UHFFFAOYSA-N 0.000 description 5
- JGFZNNIVVJXRND-UHFFFAOYSA-N N,N-Diisopropylethylamine (DIPEA) Chemical compound CCN(C(C)C)C(C)C JGFZNNIVVJXRND-UHFFFAOYSA-N 0.000 description 4
- WYURNTSHIVDZCO-UHFFFAOYSA-N Tetrahydrofuran Chemical compound C1CCOC1 WYURNTSHIVDZCO-UHFFFAOYSA-N 0.000 description 4
- 239000002253 acid Substances 0.000 description 4
- 150000001412 amines Chemical class 0.000 description 4
- 238000003556 assay Methods 0.000 description 4
- 230000015572 biosynthetic process Effects 0.000 description 4
- 238000001514 detection method Methods 0.000 description 4
- 238000011534 incubation Methods 0.000 description 4
- -1 silver ions Chemical class 0.000 description 4
- 239000000126 substance Substances 0.000 description 4
- WSFSSNUMVMOOMR-UHFFFAOYSA-N Formaldehyde Chemical compound O=C WSFSSNUMVMOOMR-UHFFFAOYSA-N 0.000 description 3
- 108091000080 Phosphotransferase Proteins 0.000 description 3
- 239000004793 Polystyrene Substances 0.000 description 3
- HEMHJVSKTPXQMS-UHFFFAOYSA-M Sodium hydroxide Chemical compound [OH-].[Na+] HEMHJVSKTPXQMS-UHFFFAOYSA-M 0.000 description 3
- 238000006243 chemical reaction Methods 0.000 description 3
- 125000002887 hydroxy group Chemical group [H]O* 0.000 description 3
- RAXXELZNTBOGNW-UHFFFAOYSA-N imidazole Natural products C1=CNC=N1 RAXXELZNTBOGNW-UHFFFAOYSA-N 0.000 description 3
- 102000020233 phosphotransferase Human genes 0.000 description 3
- 229920002223 polystyrene Polymers 0.000 description 3
- 102000004169 proteins and genes Human genes 0.000 description 3
- 239000007790 solid phase Substances 0.000 description 3
- 238000003756 stirring Methods 0.000 description 3
- 238000005406 washing Methods 0.000 description 3
- 108091032973 (ribonucleotides)n+m Proteins 0.000 description 2
- HZAXFHJVJLSVMW-UHFFFAOYSA-N 2-Aminoethan-1-ol Chemical compound NCCO HZAXFHJVJLSVMW-UHFFFAOYSA-N 0.000 description 2
- KDCGOANMDULRCW-UHFFFAOYSA-N 7H-purine Chemical compound N1=CNC2=NC=NC2=C1 KDCGOANMDULRCW-UHFFFAOYSA-N 0.000 description 2
- 108090001008 Avidin Proteins 0.000 description 2
- 241000283690 Bos taurus Species 0.000 description 2
- 102000018832 Cytochromes Human genes 0.000 description 2
- 108010052832 Cytochromes Proteins 0.000 description 2
- 108020004414 DNA Proteins 0.000 description 2
- 102000004190 Enzymes Human genes 0.000 description 2
- 108090000790 Enzymes Proteins 0.000 description 2
- TWRXJAOTZQYOKJ-UHFFFAOYSA-L Magnesium chloride Chemical compound [Mg+2].[Cl-].[Cl-] TWRXJAOTZQYOKJ-UHFFFAOYSA-L 0.000 description 2
- PXIPVTKHYLBLMZ-UHFFFAOYSA-N Sodium azide Chemical compound [Na+].[N-]=[N+]=[N-] PXIPVTKHYLBLMZ-UHFFFAOYSA-N 0.000 description 2
- FAPWRFPIFSIZLT-UHFFFAOYSA-M Sodium chloride Chemical compound [Na+].[Cl-] FAPWRFPIFSIZLT-UHFFFAOYSA-M 0.000 description 2
- NINIDFKCEFEMDL-UHFFFAOYSA-N Sulfur Chemical compound [S] NINIDFKCEFEMDL-UHFFFAOYSA-N 0.000 description 2
- 239000000427 antigen Substances 0.000 description 2
- 102000036639 antigens Human genes 0.000 description 2
- 108091007433 antigens Proteins 0.000 description 2
- 239000012300 argon atmosphere Substances 0.000 description 2
- 239000012267 brine Substances 0.000 description 2
- 238000004587 chromatography analysis Methods 0.000 description 2
- 239000008367 deionised water Substances 0.000 description 2
- 229910021641 deionized water Inorganic materials 0.000 description 2
- 238000006911 enzymatic reaction Methods 0.000 description 2
- 125000002485 formyl group Chemical class [H]C(*)=O 0.000 description 2
- 108010074605 gamma-Globulins Proteins 0.000 description 2
- 239000011159 matrix material Substances 0.000 description 2
- 239000000047 product Substances 0.000 description 2
- 238000000746 purification Methods 0.000 description 2
- 238000003345 scintillation counting Methods 0.000 description 2
- 238000000926 separation method Methods 0.000 description 2
- 229910052709 silver Inorganic materials 0.000 description 2
- 239000004332 silver Substances 0.000 description 2
- HPALAKNZSZLMCH-UHFFFAOYSA-M sodium;chloride;hydrate Chemical compound O.[Na+].[Cl-] HPALAKNZSZLMCH-UHFFFAOYSA-M 0.000 description 2
- 239000011593 sulfur Substances 0.000 description 2
- 229910052717 sulfur Inorganic materials 0.000 description 2
- YLQBMQCUIZJEEH-UHFFFAOYSA-N tetrahydrofuran Natural products C=1C=COC=1 YLQBMQCUIZJEEH-UHFFFAOYSA-N 0.000 description 2
- LOSXTWDYAWERDB-UHFFFAOYSA-N 1-[chloro(diphenyl)methyl]-2,3-dimethoxybenzene Chemical compound COC1=CC=CC(C(Cl)(C=2C=CC=CC=2)C=2C=CC=CC=2)=C1OC LOSXTWDYAWERDB-UHFFFAOYSA-N 0.000 description 1
- WCVOGSZTONGSQY-UHFFFAOYSA-N 2,4,6-trichloroanisole Chemical compound COC1=C(Cl)C=C(Cl)C=C1Cl WCVOGSZTONGSQY-UHFFFAOYSA-N 0.000 description 1
- FALRKNHUBBKYCC-UHFFFAOYSA-N 2-(chloromethyl)pyridine-3-carbonitrile Chemical compound ClCC1=NC=CC=C1C#N FALRKNHUBBKYCC-UHFFFAOYSA-N 0.000 description 1
- CBXQCVZYHBHJRI-UHFFFAOYSA-N 2-oxidoazaniumylidyneacetonitrile Chemical compound [O-][N+]#CC#N CBXQCVZYHBHJRI-UHFFFAOYSA-N 0.000 description 1
- 125000003903 2-propenyl group Chemical group [H]C([*])([H])C([H])=C([H])[H] 0.000 description 1
- UQXNEWQGGVUVQA-UHFFFAOYSA-N 8-aminooctanoic acid Chemical compound NCCCCCCCC(O)=O UQXNEWQGGVUVQA-UHFFFAOYSA-N 0.000 description 1
- 229910001148 Al-Li alloy Inorganic materials 0.000 description 1
- 241000972773 Aulopiformes Species 0.000 description 1
- 108091033380 Coding strand Proteins 0.000 description 1
- 108020004635 Complementary DNA Proteins 0.000 description 1
- GUBGYTABKSRVRQ-WFVLMXAXSA-N DEAE-cellulose Chemical compound OC1C(O)C(O)C(CO)O[C@H]1O[C@@H]1C(CO)OC(O)C(O)C1O GUBGYTABKSRVRQ-WFVLMXAXSA-N 0.000 description 1
- YXHKONLOYHBTNS-UHFFFAOYSA-N Diazomethane Chemical compound C=[N+]=[N-] YXHKONLOYHBTNS-UHFFFAOYSA-N 0.000 description 1
- KCXVZYZYPLLWCC-UHFFFAOYSA-N EDTA Chemical compound OC(=O)CN(CC(O)=O)CCN(CC(O)=O)CC(O)=O KCXVZYZYPLLWCC-UHFFFAOYSA-N 0.000 description 1
- 241000991587 Enterovirus C Species 0.000 description 1
- FYYHWMGAXLPEAU-UHFFFAOYSA-N Magnesium Chemical compound [Mg] FYYHWMGAXLPEAU-UHFFFAOYSA-N 0.000 description 1
- NQTADLQHYWFPDB-UHFFFAOYSA-N N-Hydroxysuccinimide Chemical compound ON1C(=O)CCC1=O NQTADLQHYWFPDB-UHFFFAOYSA-N 0.000 description 1
- 241000283973 Oryctolagus cuniculus Species 0.000 description 1
- 229910019142 PO4 Inorganic materials 0.000 description 1
- OAICVXFJPJFONN-UHFFFAOYSA-N Phosphorus Chemical compound [P] OAICVXFJPJFONN-UHFFFAOYSA-N 0.000 description 1
- 108010021757 Polynucleotide 5'-Hydroxyl-Kinase Proteins 0.000 description 1
- 102000008422 Polynucleotide 5'-hydroxyl-kinase Human genes 0.000 description 1
- 108020004518 RNA Probes Proteins 0.000 description 1
- 239000003391 RNA probe Substances 0.000 description 1
- VYPSYNLAJGMNEJ-UHFFFAOYSA-N Silicium dioxide Chemical compound O=[Si]=O VYPSYNLAJGMNEJ-UHFFFAOYSA-N 0.000 description 1
- BQCADISMDOOEFD-UHFFFAOYSA-N Silver Chemical compound [Ag] BQCADISMDOOEFD-UHFFFAOYSA-N 0.000 description 1
- 108091081024 Start codon Proteins 0.000 description 1
- 241000384512 Trachichthyidae Species 0.000 description 1
- JFBZPFYRPYOZCQ-UHFFFAOYSA-N [Li].[Al] Chemical compound [Li].[Al] JFBZPFYRPYOZCQ-UHFFFAOYSA-N 0.000 description 1
- 238000002835 absorbance Methods 0.000 description 1
- 238000001042 affinity chromatography Methods 0.000 description 1
- 150000001335 aliphatic alkanes Chemical class 0.000 description 1
- 125000000217 alkyl group Chemical group 0.000 description 1
- 125000003277 amino group Chemical group 0.000 description 1
- 238000012870 ammonium sulfate precipitation Methods 0.000 description 1
- 238000003491 array Methods 0.000 description 1
- 239000012298 atmosphere Substances 0.000 description 1
- 238000000376 autoradiography Methods 0.000 description 1
- 150000001540 azides Chemical class 0.000 description 1
- 125000004057 biotinyl group Chemical group [H]N1C(=O)N([H])[C@]2([H])[C@@]([H])(SC([H])([H])[C@]12[H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C(*)=O 0.000 description 1
- BVKZGUZCCUSVTD-UHFFFAOYSA-N carbonic acid Chemical class OC(O)=O BVKZGUZCCUSVTD-UHFFFAOYSA-N 0.000 description 1
- NJRWLESRYZMVRW-UHFFFAOYSA-N carboxy carboxyoxycarbonyl carbonate Chemical compound OC(=O)OC(=O)OC(=O)OC(O)=O NJRWLESRYZMVRW-UHFFFAOYSA-N 0.000 description 1
- 239000000969 carrier Substances 0.000 description 1
- 239000001913 cellulose Substances 0.000 description 1
- 229920002678 cellulose Polymers 0.000 description 1
- 210000000349 chromosome Anatomy 0.000 description 1
- 239000012043 crude product Substances 0.000 description 1
- 125000000753 cycloalkyl group Chemical group 0.000 description 1
- 125000001891 dimethoxy group Chemical group [H]C([H])([H])O* 0.000 description 1
- 238000004090 dissolution Methods 0.000 description 1
- 229940079593 drug Drugs 0.000 description 1
- 239000003814 drug Substances 0.000 description 1
- 239000000839 emulsion Substances 0.000 description 1
- 238000001704 evaporation Methods 0.000 description 1
- 230000008020 evaporation Effects 0.000 description 1
- GNBHRKFJIUUOQI-UHFFFAOYSA-N fluorescein Chemical compound O1C(=O)C2=CC=CC=C2C21C1=CC=C(O)C=C1OC1=CC(O)=CC=C21 GNBHRKFJIUUOQI-UHFFFAOYSA-N 0.000 description 1
- 238000007306 functionalization reaction Methods 0.000 description 1
- 229910052739 hydrogen Inorganic materials 0.000 description 1
- 239000001257 hydrogen Substances 0.000 description 1
- 238000005984 hydrogenation reaction Methods 0.000 description 1
- 150000002540 isothiocyanates Chemical class 0.000 description 1
- 101150103001 mEFG1 gene Proteins 0.000 description 1
- 239000011777 magnesium Substances 0.000 description 1
- 229910052749 magnesium Inorganic materials 0.000 description 1
- 229910001629 magnesium chloride Inorganic materials 0.000 description 1
- 238000004519 manufacturing process Methods 0.000 description 1
- 239000000463 material Substances 0.000 description 1
- 125000002496 methyl group Chemical group [H]C([H])([H])* 0.000 description 1
- 238000012986 modification Methods 0.000 description 1
- 230000004048 modification Effects 0.000 description 1
- JTOZLOKRDJZTGQ-UHFFFAOYSA-N n,n-dimethylformamide;potassium Chemical compound [K].CN(C)C=O JTOZLOKRDJZTGQ-UHFFFAOYSA-N 0.000 description 1
- LHSQKTSXCBNOMJ-UHFFFAOYSA-N n-(phosphanyloxymethyl)-n-propan-2-ylpropan-2-amine Chemical compound CC(C)N(C(C)C)COP LHSQKTSXCBNOMJ-UHFFFAOYSA-N 0.000 description 1
- 230000009871 nonspecific binding Effects 0.000 description 1
- 238000001668 nucleic acid synthesis Methods 0.000 description 1
- 239000002777 nucleoside Substances 0.000 description 1
- 150000003833 nucleoside derivatives Chemical class 0.000 description 1
- 229940124276 oligodeoxyribonucleotide Drugs 0.000 description 1
- 230000003647 oxidation Effects 0.000 description 1
- 238000007254 oxidation reaction Methods 0.000 description 1
- 239000002245 particle Substances 0.000 description 1
- KHIWWQKSHDUIBK-UHFFFAOYSA-N periodic acid Chemical class OI(=O)(=O)=O KHIWWQKSHDUIBK-UHFFFAOYSA-N 0.000 description 1
- 239000012071 phase Substances 0.000 description 1
- NBIIXXVUZAFLBC-UHFFFAOYSA-K phosphate Chemical compound [O-]P([O-])([O-])=O NBIIXXVUZAFLBC-UHFFFAOYSA-K 0.000 description 1
- 239000010452 phosphate Substances 0.000 description 1
- 239000013612 plasmid Substances 0.000 description 1
- 229920000768 polyamine Polymers 0.000 description 1
- 229920000642 polymer Polymers 0.000 description 1
- 238000002360 preparation method Methods 0.000 description 1
- 238000012545 processing Methods 0.000 description 1
- YMXFJTUQQVLJEN-UHFFFAOYSA-N pyrimidine Chemical group C1=CN=CN=C1.C1=CN=CN=C1 YMXFJTUQQVLJEN-UHFFFAOYSA-N 0.000 description 1
- 150000003230 pyrimidines Chemical class 0.000 description 1
- 238000011002 quantification Methods 0.000 description 1
- 230000005855 radiation Effects 0.000 description 1
- 239000011541 reaction mixture Substances 0.000 description 1
- 239000011347 resin Substances 0.000 description 1
- 229920005989 resin Polymers 0.000 description 1
- 239000002342 ribonucleoside Substances 0.000 description 1
- 125000000548 ribosyl group Chemical group C1([C@H](O)[C@H](O)[C@H](O1)CO)* 0.000 description 1
- 235000019515 salmon Nutrition 0.000 description 1
- 150000004760 silicates Chemical class 0.000 description 1
- 239000011734 sodium Substances 0.000 description 1
- 239000011780 sodium chloride Substances 0.000 description 1
- 239000001488 sodium phosphate Substances 0.000 description 1
- 229910000162 sodium phosphate Inorganic materials 0.000 description 1
- 239000002904 solvent Substances 0.000 description 1
- 230000009870 specific binding Effects 0.000 description 1
- 229940014800 succinic anhydride Drugs 0.000 description 1
- 238000012360 testing method Methods 0.000 description 1
- RYFMWSXOAZQYPI-UHFFFAOYSA-K trisodium phosphate Chemical compound [Na+].[Na+].[Na+].[O-]P([O-])([O-])=O RYFMWSXOAZQYPI-UHFFFAOYSA-K 0.000 description 1
- 238000002604 ultrasonography Methods 0.000 description 1
Classifications
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
- C07H21/00—Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids
Landscapes
- Chemical & Material Sciences (AREA)
- Health & Medical Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Biochemistry (AREA)
- Molecular Biology (AREA)
- Organic Chemistry (AREA)
- Engineering & Computer Science (AREA)
- Biotechnology (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Saccharide Compounds (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Abstract
(57)【要約】本公報は電子出願前の出願データであるため要約のデータは記録されません。
Description
【発明の詳細な説明】
r核酸の機能化のための組成および手法」本発明は、一般に核酸の機能化のため
の組成と手法に関し。
特に保持体に結合させたポリヌクレオチドの5′標識付けのための組成および手
法に関する。
検出可能な標識をポリヌクレオチドに結合させることによって、核酸の検出およ
び定量を行うことができる。検出可能な標識を核酸に結合させることは、ハイブ
リダイゼーション検定(hybridization assay)において重
要であり、前述の検定では。
標識付はポリヌクレオチドプローブを用いて、相補的なヌクレオチド配列を有し
且つハイブリダイゼーションによって保持体結合したポリヌクレオチドプローブ
(polynucleotide probe)に固定された標的核酸が、試料
中に存在するかを調べる0反応基を用いた標識付けを行うことによって、レポー
ター基(reporter group)を結合すること、或いはポリヌクレオ
チドの固定化が可能となる。
ハイブリダイゼーション検定に用いるポリヌクレオチドプローブの標識付けの一
つの方法は、放射性同位元素(たとえば。
!!p、3Hまたはl!Sl)をプローブに結合するものである。しかしながら
、放射性標識を検出する二つの方法には固有の困難性があるので、この技法の有
用性は限定されている。オートラジオグラフィー (autoradiogra
phy)は、写真乳剤中で銀イオンを還元して銀粒子を形成する時間のかかる手
順であり、またもう一つの検出技法であるシンチレーシッンカウンティング(s
cintillation counting)は、高価な装置を必要とし且つ
ある程度の遅延が避けられない、さらに、放射性同位元素は、安全上の理由から
特別な取扱いを必要とする +zs1等の幾つかの放射性同位体の貯蔵寿命は比
較的に短いので、そのために臨床診断の場においてさらに有用性が限定される。
非放射性標識付はシステムにおいては、検出を可能にするためのシグナルと会合
したレポーター基を用いて、プローブに「標識付け」を行う。レポーターは、プ
ローブの存在または位置を表示するために、シグナルをプローブに会合させるの
に用いる薬剤である。信号そのものは、直接に認識できるものであり、分離した
または分離可能なシグナル分子によって発生することができる。標識は、正確に
はシグナルを取り込むタイプのレポーターである。
標識をプローブに結合する方法の一つが、 Hard等、欧州特許出願63.8
79号に記載されている* Wardは、ビオチン(biotin)レポーター
分子がプリン(putins)またはピリミジン(pyrimidine)環に
共有結合したプローブの製法を開示している。選定されたビオチン基化したプリ
ンおよびピリミジンは1次に、酵素法によってプローブの核酸のリン酸ジエステ
ルバックボーン内に直接に取り込まれる。しかしながら、酵素技術は費用が嵩み
。
操作が難しい。
その他の方法では、タンパク質によって標識をプローブに連鎖する。−末鎖ポリ
オウイルスRNA(polio virus RNA)は、ビオチンのN−ヒド
ロキシスクシニミジルエステル(N−hydroxysuccinimidyl
ester)と反応するタンパク質に自然連鎖させて、アビジン(avidi
n)被覆した球の特異な結合によって検出可能なビオチン基化したレポーター基
を有するRNAプローブを得ることが出来る。 Richards等、Proc
、 Nat!、Sci、 (USA ) 、 76: 676−680 (19
79) 、同様に、ビオチン標識付けしたチトクロームは、ホルムアルデヒドの
存在するもとでの反応によってRNAに連結させ、その後にアビジン被覆した球
を用いて標識付けることが出来るm Manning等、 Chromosom
a (Berl、 ) 、 53: 107−117(1975) 、 Lかし
ながら、標識付けを必要とする核酸の全てが自然にタンパク質と会合することは
なく、また核酸のチトクローム結合の位置ならびに量は容易に予測できないので
、末端標識付けのための化学合成手法がめられる。
このような化学合成手法の一つにおいては、核酸を酸化して3゛アルデヒドに変
換し、さらにアルキルジアミンまたはポリアミンを用いて縮合し、ビオチンの結
合を行うレポーター基をっ(る。Broker等、 Nucleic Ac1d
s Res、、 5 :363−384 (1978)、同様に核酸の過沃素塩
酸酸化によって得たアルデヒドを用いて、核酸に蛍光標識を結合してもよい。B
auman等、J、 Histochem、、 Ctochem、 ) 、、2
9 : 227−237 (1981) 、しかし、自動化された核酸合成プロ
セスにおいて、保持体に結合したポリヌクレオチドにレポーター基を結合する技
術が望まれている。
5°標識付けの別の方法においては、ビオチンを2−(ビオチニルアミド)エタ
ノールに変換し、さらにリン酸化した重合体保持ヌクレオチドに縮合する。ビオ
チンのアミンエタノール誘導体をリボース環の5゛水酸基に縮合すると、ヌクレ
オチドの保護を取り除けば、安定したリン酸ジエステル結合が得られる。KeI
Ipe等、 Nucleic Ac1ds Res、、 13:45−57 (
1985) a Lかしながら、この方法によって特異なレポーター基が結合す
るので。
後に種々の望ましいレポーター基を結合するのに用いることが可能な、反応機能
性を有するオリゴヌクレオチドを形成することが出来ない。
溶液中のヌクレオチドは、保護された6−アミノ−1−へフサノールリン酸塩を
用いた縮合によってアミン機能化されている、 Baker等、 J、 Bio
l、 CheII+、、 22: 7135−7147 C1’972)、 ・
しかし、これらの手順は実施するのが難しく、こ、れまで固相合成手順に組み込
まれていない。
ヌクレオチドを保持体に結合する別の方法は、アフィニティークロマトグラフィ
ー (affinity +=hromatography)によりヌクレアー
ゼを精製する際に、P−アミノフェノールで3゛−誘導された1本鎖のヌクレオ
チドを、リンカ−によってゲルマトリックスと結合させる。このリンカ−は、臭
化シアンおよびアジド(azide)を用いて、3.3°ジアミノジプロビルア
ミンをマトリックスに結合させることによって形成する。その結果得られるアミ
ン機能化ゲルを無水コハク酸で処理し、それからアミン機能化ヌクレオチドに結
合する。Cuatrecasas+ J、 Biol、 Chem、。
12: 3059−3065 (1978)、 Lかしながら、アミン機能化ヌ
クレオチドそのものの調製は1手間を要する手順によって溶液中で実施されてい
る0例えば+ Baker等、 J、 Biol、Che+n、22: 713
5−7147 (1972)を参照のこと。
5°標識付けの一方法においては、キナーゼ処理を行った保護されていないオリ
ゴヌクレオチドの5−アミノアルキルホスホラミダイト(5−aminoalk
yl phosphoramj+Hte)誘導体を溶液中で調製する。保護され
ないオリゴヌクレオチドのキナーゼ処理は。
T4ポリヌクレオチドキナーゼによっておこなう。キナーゼ処理したオリゴヌク
レオチドを、イミダゾール(imidazole)およびジアミノアルカン(d
ias+ino alkane)と反応させる。その結果得られる5”−アミノ
アルキルホスホラミダイトDNAを、カリウムN、N−ジメチルフォルムアミド
中のビオチン−N−ヒドロキシスクシニミジルエステルと反応させ、ビオチン標
識付けしたオリゴデオキシリボヌクレオチドを調製する。 Chollet等、
Nucletcラミダイト法(solid−phase phosphora
+pidite method)または固相ホスホトリエステル法(solid
−phase phosphotriester +weth。
d)を用いて合成した、オリゴヌクレオチドを使用しているにもされ、固相から
切り離され1分離され、精製される0機能化の後は、2度目の分離および精製が
必要である。分離および精製はそれぞれ損失を伴い、かつ時間が掛かるので、固
相合成の際にポリヌクレオチドを機能化することが望ましい、さらにキナーゼ処
理反応には、酵素を用いる方法に一般に見られる費用と処理の困難さの問題があ
る。
したがって、固相合成を行うポリヌクレオチドにレポーター基を結合させる一般
的な方法および組成がめられている。
光里■翌旌
本発明による組成は、固相合成の際に核酸に結合させる末端標識に関連する。こ
の末端標識は、ヒドロキシルアミンのホスホラミダイト(phosphoram
idite)である。
本発明による方法は、固相合成の際に核酸に末端標識を結合させることに関連す
る。特に、ヒドロキシルアミンのホスホラミダイトは、保持体に結合させたデオ
キシオリゴヌクレオシドに縮合される。
詳細な説明
本発明では、ヒドロキシルアミン、望ましくはω−ヒドロキシルアミンのホスホ
ラミダイトを、保持体に結合させたオリゴヌクレオシドに縮合する。保持体は、
ケイ酸塩およびセルロースに限らず、核酸の固相合成に有効なものであればいか
なる種類であってもよい。ポリヌクレオシドは、リボヌクレオシドまたはデオキ
シリポヌクレオシドとする。
本発明によるω−ヒドロキシルアミンは、一般的にはどのような長さであっても
よいが、望ましくは2〜10の炭素の長さとする。ω−ヒドロキシルアミンは、
アルキル、アリル、シクロアルキル、あるいは一般的にヒドロキシル成分をオリ
ゴヌクレオシドに縮合することができ、且つヒドロキシル成分をオリゴヌクレオ
シドに反応させることができ、且つ立体障害を起こさずにレポーター基とアミン
成分を反応させることができる構造であればどのようなものであってもよい。特
に望ましいω−ヒドロキシルアミンとしては、エタノールアミン、プロパツール
アミン、ブタノールアミン、ペンタノールアミン、ヘクサノールアミン、ヘプタ
ツールアミン、オクタツールアミン、ノナノールアミン、デカノールアミン、お
よびp−アミノフェノールがある。
本発明で使用するレポーター基としては、ビオチニル(biotinyl)、
N−ヒドロキシスクシニミド、およびフルオレジインイソチオシアン酸塩がある
。レポーター基を合成オリゴヌクレオチドに直接に結合させる方法よりも本発明
が特に優れている点は、合成ポリヌクレオチドの保護解除に必要な厳しい条件に
、標識すなわちレポーター基が耐える必要がないという点である。
したがって1本発明による方法によると、オリゴヌクレオチドは、とりわけ、ビ
オチン、ハプテン(hapten)、抗原、および蛍光すなわち化学ルミネセン
ス機能で、5°標識付けすることができる。
下記の実施例に述べるハイブリダイゼーション処理に使用するために、単純ヘル
ペスウィルスタイプI (H5V−1) Wクンバク質D (gD)遺伝子の、
(+)プラス(コーディング) 1Nまたは(−)マイナス(アンチコーディン
グ)鎖のいずれがを含む一本鎖ファージを、標的配列として用いた。二本鎖遺伝
子配列の一部を下記の第1表に示す。下の鎖はアンチコーディング鎖である。こ
の配列は、 Watson等、 5cience、 218: 381−384
(1982)に発表されたものである。プラス鎖の一部を1本発明ではプロー
ブとして用いた。これらの−末鎖プローブ配列は、第1表において遺伝子のコー
ディング鎖の上に引いた文字付き線によって示す。
実施例に用いた標的は、−末鎖ファージ、ファージ2(Φ2) Tニア’)、
H5V−1mタンハ’)質D(gD)遺伝子(7)1 、454塩基を含んでい
る(すなわち、第67塩基から第1 、287塩基、開始コドンヌクレオチド数
241は、プラスミドM13mp18にりq−ンされた)、Φ2のHDのマイナ
ス鎖配列は、上記の(+)プラス鎖プローブに相補的な標的として用いる。
下記の実施例においては9本発明の種々の様態を示す一連の実験について述べる
。
実施例1は1本発明による抗体被覆ポリヌクレオチドの標識化の効率を示す、実
施例2は、標的に結合させた2つのプローブから成るハイブリダイゼーションサ
ンドインチを捕獲するための1本発明に従って標識付けされたプローブの使用を
示す。
実施例1
配列5°−P−^CCGAA TGCTCCTACAACAAG TCT C−
3°を有するポリヌクレオチドの5°末端に1本発明による方法によって抗原で
標識付けした。
もっと具体的に説明すると、第1のプローブは、前述したようにオリゴヌクレオ
チドGであった。前述のオリゴヌクレオチドGの5′標識付けは、フルオレジイ
ン(f 1uorescein)を用いておこなってもよい。
オリゴヌクレオチドGLよ、5゛アミン能化オリゴヌクレオチドGをフルオレジ
インイソチオシアン酸塩と反応させることによりて、5′フルオレジイン標識付
けを行った。5°チアミン能化オリゴヌクレオチドGは、その3゛末端によって
固体保持体に結合しているオリゴヌクレオチドGを、((CL)tc)l) z
NP(QCllり0(CHりINH(DMT)の式(式中、 DMTはジメトキ
シトリチル基である)を持つホスホラミダイトと反応させることによって形成さ
れた。
このホスホラミダイトの合成においては、ジアゾメタンのエーテル溶液約8 a
llを、メタノールLow/中の1−7ミノカブリル酸(ウィスコンシン州ミル
ウォーキーのAlclrich Chemicalが販売している)159.2
tng(1ミリモル)に加えた。メタノールを蒸発させて、ω−アミノカプリ
ル酸メチルエステル174.9 tngを得た。次に、ω−アミノカプリル酸メ
チルエステル173 mg(1ミリモル)、塩化ジメトキシトリチル1ミリモル
、およびジイソプロピルエチルアミン1ミリモルを、0℃においてアルゴン雰囲
気のもとで、無水テトラヒドロフラン(anhydrous tetrahyd
rofuran)5 mAに加えた。この混合物を25℃にまで温め、1時間に
わたって攪拌した。溶剤を蒸発させ、粗生成物を酢酸エチル50mA!で希釈し
た後、水で2回、続いて飽和重炭酸塩および塩水で順次洗った。生成物を無水硫
酸マグネシウム上で乾燥蒸発させ、ω−アミノカプリル酸メチルエステルのジメ
トキシトリチル誘導体(ACAM−DMT)460 mgを得た。
=78℃のアルゴン雰囲気の下にある無水テトラヒビ0フ5フの1モル水素化ア
ルミニウムリチウム1.24a+Ilを加えた.この反応混合物を一78℃で5
分間攪拌し.続いて25℃で30分間攪拌し,その後にテトラヒドロフラン中の
5%の水10J!,エーテル200+IIJ,セライト3 g+ および無水硫
酸マグネシウム0.5gで希釈した.得られた混合物を約30分間攪拌してから
ろ過し、一般式〇〇.(CHz) sNH−DMTをもつアルコールを得た。
無水ジクロルメクン10 蒙l中の80(CH.)INH−DMT O.72ミ
リモルに,ジイソプロピルエチルアミン0.フロミリモルとクロロ−N、N゛−
ジイソプロピル了ミノメトオキシホスフィン(カリフォルニア州エメリーベルの
American Bionuclearが販売している)0.フロミリモルを
加えた。この混合物を25℃で40分間攪拌し1次に酢酸エチル50m1で希釈
し、塩水で4回洗浄した。この反応の生成物は+ McBride等、 Tet
rahedron Letters+ 24 : 245 (1983)による
重合体保持体デオキシオリゴヌクレオチド合成において、デオキシヌクレオシド
N、N−ジイソプロピルアミノメトオキシホスフィンとともに使用するホスホラ
ミダイト合成手法によって、保持体結合ジオキシヌクレオシドGに結合させた。
本発明によるデオキシオリゴヌクレオシドへのレポーター基の結合の定量は、下
記に示すデメトキシトリチル検定(de+neth。
xytrityl assay)によって行った。
Aaqs ×希釈溶液
結合比率= X 14.3 X 10”用いたμモル標識
式中、A49゜は、除去されたデメトキシトリチル成分を含有する溶液の吸光度
を、波長498 nmで測定したものである。この方法によると、結合は90%
を越えると判断された。
去旅炎叢
第2のプローブであるオリゴヌクレオチドAは+ Maniatis等、 Ce
11.15: 687 (1978)(7)手順に従ッテ、!!p テ標識付は
シタ、プローブを使用した日のプローブの比放射能は、 3.2 XIO’cp
s/ピコモルであった。
5′フルオレジイン標識のないオリゴヌクレオチドGを、第1のプローブの対照
として用いた。第2の対照プローブは、標的配列の何れとも相補的でない、
5”CATGATCTTGCGGTCGGATTCTTC3’ の配列を持ち
ff!pで標識付けをしたもので、使用した日の比放射能は3.2 X 10’
cpm/ ピコモルであった。
標的として用いたのは一本鎖D2であった。−末鎖Φ2は、第1および第2のプ
ローブ、および第1のプローブ対照と相補的であるが、第2の対照プローブとは
相補的でない。
保持体として、イリノイ州ロックランドのPierce Chemicalが販
売しているものと同等の174インチのポリスチレンビーズを、フルオレジイン
抗体(アンチフルオレジイン)で被覆した。アンチフルオレジインの産生には、
ウサギを用いた。硫酸アンモニウム沈澱、続いてDEAEセルロースクロマトグ
ラフィーによって、アンチフルオレジインを精製した。溶液中では、アンチフル
オレジインは約10”の親和力をもち、フルオレジインの蛍光を約99%消光し
た。
アンチフルオレジイン被覆したビーズを調製するために、ビーズをpH8のIQ
mM NaHCO+緩衝液中で、15秒間超音波処理して洗浄する。超音波処
理の後、ビーズを脱イオン水中で全ての微粒子が取り除かれるまで洗浄する。4
0+4!の10 mM Na)ICOsを用いて、約200個のビーズを被覆す
る0次ニ、 0.57 +mg/ va 1 (Dttj度の精製アンチフルオ
レジイン7.1を加える。ビーズを室温で約65時間インキュベートする。イン
キュベーションの後、ビーズを脱イオン水で洗浄し、@引フィルター上で風乾す
る。
アンチフルオレジイン被覆したビーズはそれぞれ、1つのビーズをTDX緩衝液
(0,1M NaPOa、 pH7,5; 0.1%NaNx; 0.1%ウシ
ガンマグロブリン)中の1 nMフルオレジイン1.5 wagと共に、インキ
ュベートすることによって示されるように、1.4ピコモル以上のフルオレジイ
ンと結合することができる。25℃で20時間にわたるインキュベーションによ
って、溶液から97%のフルオレジインが除去された。ビーズを51m1の脱イ
オン水中で3回洗浄し、1回洗浄する毎にビーズをプロンティング(吸い取り)
によって乾燥させ、その後に0.I M NaOH中で10分間インキュベート
したが、この間に最初に被覆したフルオレジインの60%が溶液中に放出された
。このように、各ビーズは約0.9ピコモルのフルオレジインと結合する能力が
ある。
[115’−フルオレジイン標識したオリゴヌクレオチド、5゛−ビオチン標識
したオリゴヌクレオチド(いずれも3°−3仲末端標識付き)並びにキナーゼ3
仲標識したオリゴヌクレオチド、およびアンチフルオレジインで被覆したポリス
チレンビーズを用いて、下記の条件において一連の捕獲実験をおこなった。
szp標識したオリゴヌクレオチドのうちの1つを1ピコモル含む変性、せん断
したサケ精子DNA (ミズリー州セントルイスのSigma Chemica
l Company) 200 /Jg/ walと、 100μlのTDX緩
衝液(0,1Mリン酸ナトリウム、 po 7.5; 0.1%NaN3 ;お
よび0.01%ウシガンマグロブリン、ミズリー州セントルイスのSigma
Chemical Company)を混合した。
アンチフルオレジイン被覆したポリスチレンビーズをこの溶液に加えた。この系
を25℃で18時間インキュベートした後、ビーズを取り出して、25℃のTD
X緩衝液1mlの中で5分間洗浄した0次にビーズをシンチレーシツンカウンタ
ーで測定した。
高温で5分間ビーズを洗浄して、ビーズ上の抗体錯体の安定性を試験した。第■
表に前述の一連のビーズの捕獲効率および安定性を示す。
第■表
5”フルオレジイン 5′ビオチン標識 5°5zp−標識1度皿徴旦友■生−
一 旦友l生−−−−リ11工第■表に示すように、これらのビーズの捕獲効率
と安定生は高く、ハイブリダイゼーション捕獲系に有用なものである。これらの
ビーズには、ビオチン標識あるいは32P標議したオリゴヌクレオチドは、はん
の僅かしか結合しないか、もしくは全く結合せず、ビーズへの非特異な結合は殆
どないことを示しており、このような系におけるバックグラウンドは非常に低い
。
(2) フルオレジイン抗体被覆したビーズがフルオレジイン標識したオリゴヌ
クレオチドを捕獲する率を、もつと詳細に測定するために、一連のビーズを一つ
づつ sipで3゛末端標識しである1ピコモルの5゛−フルオレジイン標識し
たオリゴヌクレオチドAを用いて、時間を変えてインキュベートした。捕獲の百
分率を各ビーズについて測定した。その結果を第■表に示す。
豊麗 オリゴヌクレオチドの捕獲率(%)30分 45
1時間 48
2時間 75
3時間 91
4時間 90
5時間 88
6時間 86
7時間 85
8時間 82
第■表に示すように、2〜3時間内に、ビーズによって5“フルオレジイン標識
付きオリゴヌクレオチドの90%が捕獲される。ビーズ上の放射性標識の量が、
時間の経過とともに僅かに低減するのは、ビーズから抗体が少し漏れることを示
しているものと考えられる。
(3)実験1
アンチフルオレジイン被覆したビーズの捕獲率が確定したので、第1のプローブ
(5″−フルオレジイン標識付きのオリゴヌクレオチドG)1ピコモル、第2の
プローブ(3Zp−標識オリゴヌクレオチドA)1ピコモル(使用当日の比放射
゛能3.2X10bcpm/ピコモル)、そして標的(Φ2 SS、第1および
第2のプローブの双方に相補的である)1ピコモルを、20 X 5SPE (
3,6M NaCl; 0.23 M NaHzPOa、 pl(7,5;およ
び20 mM EDTA)を希釈して得り5 X 5SPE テ50.u 1
ニ希釈した。このハイブリダイゼーション溶液を、50℃で3時間インキュベー
トした。このハイブリダイゼーション溶液を、TDX 緩衝液10(lu7!で
希釈し、アンチフルオレジイン被覆したビーズ1個を加えた。25℃で3時間イ
ンキュベートした後、 TDX緩衝液1 ml、を用いて、37℃で5分間ビー
ズを洗浄し、さらにシンチレーションカウンターで測定する前に、再びTDX
11街液1 mllを用いて37℃で5分間洗浄した。
対照実験
同じプロトコールに基づき、但し下記のように変更を加えて、3つの対照実験を
行った。第1の対照実験(対照1)では、第1のプローブとして、5゛フルオレ
ジイン標識付きのオリゴヌクレオチドG、第2のプローブとして、5゛3仲標識
付きのオリゴヌクレオチドAを、標的を存在させないで、アンチフルオレジイン
被覆したビーズと共にインキュベートした。第2の対照実験(対照2)では、実
験lのフルオレジイン標識したオリゴヌクレオチドGの替わりに、第1のプロー
ブとして、標識付けしていないオリゴヌクレオチドGを1ピコモル用いた。最後
に、第3の対照実験(対照3)では、第1のプローブとして、5゛−フルオレジ
イン標識付きのオリゴヌクレオチドGを1ピコモル、第2プローブとして、32
8gと呼ばれる2tp−標識付きオリゴヌクレオチド(配列はφ2SSと相補
的である)を1ピコモル、また標的としてΦ2 SS 1ピコモルを用いた。
これらの実験の結果を第■表に要約する。
実験 4.2
対照1 0.002
対照2 0.07
対照3 0.22
実験と対照1を比較すると、フルオレジイン標識付きのオリゴヌクレオチドG、
Φ2SSおよび32p−標識付きのオリゴヌクレオチド^から成るハイブリッ
ドは、アンチフルオレジイン被覆した固体保持体によって\選択的に捕獲される
ことがわかる。
対照2および3は、正しい抗原標識付きの第1のプローブが存在しなければ、ま
た、標的に相補的な正しい第2プローブが存在しなければ、ハイブリッドは効果
的に産生されず、捕獲もされないことを示している。
本発明を考慮すれば、当業者は種々の改善ならびに変更を行うことが出来るもの
と思われる。例えば、ここではω−ヒドロキシルアミンが例示されているが、保
持体結合したヌクレオシドとの結合、およびレポーター基との結合を、それぞれ
形成するのに用いる水酸基およびアミン基をもつ全ての分子を用いることができ
る。結論として1本発明は、添付する請求の範囲の全範囲を網羅することを意図
する。
国際調査報告
””’−”口”All””NOPCT/US86101290
Claims (4)
- 1.固相合成の際に核酸に結合する末端標識で,ヒドロキシルアミンのフォスフ ォラミダイトから成るもの。
- 2.請求の範囲第1項に記載の末端標識で,前記ヒドロキシルアミンが、1個か ら10個の炭素原子を含むもの。
- 3.請求の範囲第2項に記載の末端標識で,前記ヒドロキシルアミンが,エタノ ールアミン,プロパノールアミン,ブタノールアミン,ベンタノールアミン,ヘ クサノールアミン,ヘブタノールアミン,オクタノールアミン,ノナノールアミ ンデカノールアミン,およびP−アミノフェノールから成るグループから選択さ れるもの。
- 4.固相合成の際に核酸に末端標識を結合する方法で,下記の過程,すなわち, ヒドロキシルアミンのフォスフォラミダイトを調製し,さらに ヒドロキシルアミンのフォスフォラミダイトを、保持体結合したポリヌクレオシ ドに縮合することから成るもの。
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US744508 | 1985-06-13 | ||
| US06/744,508 US4762779A (en) | 1985-06-13 | 1985-06-13 | Compositions and methods for functionalizing nucleic acids |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| JPS62503099A true JPS62503099A (ja) | 1987-12-10 |
| JP2534247B2 JP2534247B2 (ja) | 1996-09-11 |
Family
ID=24992965
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP61503417A Expired - Lifetime JP2534247B2 (ja) | 1985-06-13 | 1986-06-13 | 固相支持体に結合した核酸 |
Country Status (7)
| Country | Link |
|---|---|
| US (1) | US4762779A (ja) |
| EP (1) | EP0224578B2 (ja) |
| JP (1) | JP2534247B2 (ja) |
| CA (1) | CA1303526C (ja) |
| DE (1) | DE3673501D1 (ja) |
| IL (1) | IL79111A (ja) |
| WO (1) | WO1986007363A1 (ja) |
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| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US4500707A (en) * | 1980-02-29 | 1985-02-19 | University Patents, Inc. | Nucleosides useful in the preparation of polynucleotides |
| CA1219824A (en) * | 1981-04-17 | 1987-03-31 | David C. Ward | Modified nucleotides and methods of preparing and using same |
| US4605735A (en) * | 1983-02-14 | 1986-08-12 | Wakunaga Seiyaku Kabushiki Kaisha | Oligonucleotide derivatives |
| SE466208B (sv) * | 1983-12-20 | 1992-01-13 | California Inst Of Techn | Enkelstraengad aminoderivat av oligonukleotider och foerfarande foer framstaellning daerav |
-
1985
- 1985-06-13 US US06/744,508 patent/US4762779A/en not_active Expired - Lifetime
-
1986
- 1986-06-12 IL IL79111A patent/IL79111A/xx not_active IP Right Cessation
- 1986-06-13 CA CA000511560A patent/CA1303526C/en not_active Expired - Lifetime
- 1986-06-13 JP JP61503417A patent/JP2534247B2/ja not_active Expired - Lifetime
- 1986-06-13 EP EP86904012A patent/EP0224578B2/en not_active Expired - Lifetime
- 1986-06-13 DE DE8686904012T patent/DE3673501D1/de not_active Expired - Lifetime
- 1986-06-13 WO PCT/US1986/001290 patent/WO1986007363A1/en not_active Ceased
Also Published As
| Publication number | Publication date |
|---|---|
| EP0224578B1 (en) | 1990-08-16 |
| WO1986007363A1 (en) | 1986-12-18 |
| EP0224578B2 (en) | 1994-11-09 |
| DE3673501D1 (de) | 1990-09-20 |
| EP0224578A1 (en) | 1987-06-10 |
| US4762779A (en) | 1988-08-09 |
| IL79111A0 (en) | 1986-09-30 |
| EP0224578A4 (en) | 1987-10-19 |
| JP2534247B2 (ja) | 1996-09-11 |
| CA1303526C (en) | 1992-06-16 |
| IL79111A (en) | 1991-09-16 |
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